Rroxscaffold_3G00227290

oligopeptide transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0003716
Physical Location & Seq
Reverse (-)
11413079 .. 11414743
1665 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00227290.1

Sequence Viewer

Length: 1224 bp
ATGGCTACCATACCTCTGGAAACCGAGCTTGTCGTGGCCAAACACGGTGGCAAAGATGTTATCGACATTGACGATGAAGACGACGAGTTGTCACCGATCGAGGAGGTTCGTCTAACAGTGTCAAACGAAGACGACCCGACCCTCCCAGTATGGACATTCCGCATGTGGTCTATAGGCCTCTTCTCGTGCGCCCTCCTCTCCTTCCTCAACACCTTCTTCTCCTACCGCACCGAGCCCCTCGTCATCTCCGTGATCTCAGTCCAGGTGGCGAGTCTCCCCCTCGGAAAGTTCATGGCGAGGACCCTGCCCACGAGGAAGTTCCGAATTGGCTCGAAAGAGTTTTCACTTAATCCTGGTGAGTTCAACATCAAAGAGCACGTGTTGATATCCATTTTTGCAAATGCCGGAGCAGGGTTTGGGAACGGTCCGGCTTATGCAGTTGGGATTGTGACTATCGTAAAGGCGTTTTATGTGAGGAATATATCTTTCTTCGCGAGTTGGGTACTTGTTATTACCACGCAGACAAGTAACGTGGGGTTTTGTGGCGGCAAAGTGCAGGTTTTGGGGTATGGATGGGCGGGTATTCTCCGGAAGTACGTGGTGGATCCGGCTACGATGTGGTGGCCTAGTAGTCTGGTTCAGGTCTCTTTGTTTAGGGCTCTACACGAGAAAGACAACAACCGCATGTCCAGAGGAAAATTCTTTCTGATTGCGCTGGTATGCAGCTTCTCTTGGTATGTTGTCCCAGACTACCTTTTCACAACTATATCAACCATTTCATGGGTTTGCTGGCTTTACCCCAAGTCAATAACAGCACATCAAATCGGGTCGGGCATGCGTGGACTTGGTATTGGGTCACTTACATTGGATTGGTCTGTCATAGCCTCGTTTTTAGGCAGCCCACTGATCAGTCCATTTTTTGCCATTGTCAATATCACTGTTGGCTATATTCTCACCATGTATGTGGTACTACCGACTGCCTATTGGGGATTCAACTTATACAATGCCAAGAACTTCGCAATCTTCTCTAAAAACTTGTTTGATGACCATGGTGAAATATATAATGTCACGGCCATTGTCAATGACAAGTTCGAAATTGACATGCCTGCCTACAAAAAACAAGGACATATAAACCTCAGTGTGTTCTTTTCCCTGACCTATGGGATTGGCTTCGCTGGTGTTATATCGACCATCACACATGTGGCTCTATTCAATGGAAGGTGA

Protein Analysis

407

Amino Acids

45.27

Weight (kDa)

7.05

Isoelectric Point (pI)

27.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OPT PF03169 50 - 407 3.6e-79 OPT oligopeptide transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 547
AccB7I CCANNNNNTGG 1 cut(s) 780
AccII CGCG 1 cut(s) 494
AccIII TCCGGA 1 cut(s) 588
AciI CCGC 5 cut(s) 160, 226, 546, 578, 682
AclWI GGATC 2 cut(s) 599, 612
AcoI YGGCCR 2 cut(s) 36, 1071
AcsI RAATTY 1 cut(s) 698
AcvI CACGTG 1 cut(s) 379
AfaI GTAC 3 cut(s) 504, 596, 969
AfiI CCNNNNNNNGG 2 cut(s) 411, 780
AflIII ACRYGT 2 cut(s) 378, 1198
AgsI TTSAA 3 cut(s) 364, 994, 1213
AhdI GACNNNNNGTC 1 cut(s) 88
AjnI CCWGG 2 cut(s) 261, 352
AleI CACNNNNGTG 1 cut(s) 1199
AluBI AGCT 2 cut(s) 28, 726
AluI AGCT 2 cut(s) 28, 726
Alw21I GWGCWC 1 cut(s) 378
Alw26I GTCTC 2 cut(s) 278, 649
AlwI GGATC 2 cut(s) 599, 612
Aor13HI TCCGGA 1 cut(s) 588
AoxI GGCC 4 cut(s) 36, 175, 623, 1071
ApeKI GCWGC 2 cut(s) 723, 897
ApoI RAATTY 1 cut(s) 698
AspLEI GCGC 2 cut(s) 191, 715
AspS9I GGNCC 2 cut(s) 300, 425
AsuHPI GGTGA 4 cut(s) 84, 368, 946, 1064
AsuII TTCGAA 1 cut(s) 1092
AvaII GGWCC 2 cut(s) 300, 425
BalI TGGCCA 1 cut(s) 38
BamHI GGATCC 1 cut(s) 604
BanII GRGCYC 2 cut(s) 237, 661
BauI CACGAG 3 cut(s) 184, 310, 665
BbrPI CACGTG 1 cut(s) 379
BbsI GAAGAC 2 cut(s) 84, 135
Bbv12I GWGCWC 1 cut(s) 378
BbvI GCAGC 2 cut(s) 735, 909
BccI CCATC 2 cut(s) 567, 1199
BceAI ACGGC 1 cut(s) 1086
BcgI CGANNNNNNTGC 2 cut(s) 286, 320
BciT130I CCWGG 2 cut(s) 263, 354
BclI TGATCA 1 cut(s) 906
BcoDI GTCTC 2 cut(s) 278, 649
BfaI CTAG 1 cut(s) 627
BfmI CTRYAG 1 cut(s) 171
BfuAI ACCTGC 1 cut(s) 547
BisI GCNGC 3 cut(s) 547, 724, 898
BlsI GCNGC 3 cut(s) 548, 725, 899
Bme1390I CCNGG 2 cut(s) 263, 354
Bme18I GGWCC 2 cut(s) 300, 425
BmeRI GACNNNNNGTC 1 cut(s) 88
BmgT120I GGNCC 2 cut(s) 300, 425
BmiI GGNNCC 2 cut(s) 302, 606
BmrFI CCNGG 2 cut(s) 263, 354
BmrI ACTGGG 1 cut(s) 140
BmuI ACTGGG 1 cut(s) 140
BpiI GAAGAC 2 cut(s) 84, 135
Bpu14I TTCGAA 1 cut(s) 1092
BsaAI YACGTR 2 cut(s) 379, 598
BsaI GGTCTC 1 cut(s) 649
BsaJI CCNNGG 2 cut(s) 280, 1048
BsaWI WCCGGW 1 cut(s) 588
Bsc4I CCNNNNNNNGG 2 cut(s) 411, 780
Bse1I ACTGG 1 cut(s) 146
BseAI TCCGGA 1 cut(s) 588
BseBI CCWGG 2 cut(s) 263, 354
BseDI CCNNGG 2 cut(s) 280, 1048
BseGI GGATG 1 cut(s) 578
BseLI CCNNNNNNNGG 2 cut(s) 411, 780
BseMII CTCAG 2 cut(s) 270, 1150
BseNI ACTGG 1 cut(s) 146
BseRI GAGGAG 2 cut(s) 116, 185
BseXI GCAGC 2 cut(s) 735, 909
BsgI GTGCAG 1 cut(s) 575
Bsh1236I CGCG 1 cut(s) 494
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 4 cut(s) 38, 177, 625, 1073
BsiEI CGRYCG 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 378
BsiSI CCGG 4 cut(s) 405, 428, 589, 608
BslFI GGGAC 1 cut(s) 728
BslI CCNNNNNNNGG 2 cut(s) 411, 780
BsmAI GTCTC 2 cut(s) 278, 649
BsmFI GGGAC 1 cut(s) 728
BsnI GGCC 4 cut(s) 38, 177, 625, 1073
Bso31I GGTCTC 1 cut(s) 649
Bsp119I TTCGAA 1 cut(s) 1092
Bsp1286I GDGCHC 3 cut(s) 237, 378, 661
Bsp13I TCCGGA 1 cut(s) 588
Bsp143I GATC 4 cut(s) 96, 252, 604, 906
Bsp19I CCATGG 1 cut(s) 1048
Bsp68I TCGCGA 1 cut(s) 494
BspACI CCGC 5 cut(s) 160, 226, 546, 578, 682
BspANI GGCC 4 cut(s) 38, 177, 625, 1073
BspCNI CTCAG 2 cut(s) 269, 1149
BspEI TCCGGA 1 cut(s) 588
BspFNI CGCG 1 cut(s) 494
BspLI GGNNCC 2 cut(s) 302, 606
BspMI ACCTGC 1 cut(s) 547
BspPI GGATC 2 cut(s) 599, 612
BspT104I TTCGAA 1 cut(s) 1092
BspTNI GGTCTC 1 cut(s) 649
BsrI ACTGG 1 cut(s) 146
BssECI CCNNGG 2 cut(s) 280, 1048
BssMI GATC 4 cut(s) 96, 252, 604, 906
BssSI CACGAG 3 cut(s) 184, 310, 665
BssT1I CCWWGG 1 cut(s) 1048
Bst2BI CACGAG 3 cut(s) 184, 310, 665
Bst2UI CCWGG 2 cut(s) 263, 354
Bst4CI ACNGT 4 cut(s) 47, 118, 425, 940
Bst6I CTCTTC 1 cut(s) 185
BstBAI YACGTR 2 cut(s) 379, 598
BstBI TTCGAA 1 cut(s) 1092
BstC8I GCNNGC 3 cut(s) 791, 836, 1107
BstDEI CTNAG 2 cut(s) 256, 1136
BstDSI CCRYGG 1 cut(s) 1048
BstF5I GGATG 1 cut(s) 578
BstFNI CGCG 1 cut(s) 494
BstHHI GCGC 2 cut(s) 191, 715
BstKTI GATC 4 cut(s) 99, 255, 607, 909
BstMAI GTCTC 2 cut(s) 278, 649
BstMBI GATC 4 cut(s) 96, 252, 604, 906
BstMCI CGRYCG 1 cut(s) 99
BstNI CCWGG 2 cut(s) 263, 354
BstNSI RCATGY 5 cut(s) 166, 688, 838, 1105, 1202
BstSCI CCNGG 2 cut(s) 261, 352
BstSFI CTRYAG 1 cut(s) 171
BstUI CGCG 1 cut(s) 494
BstV1I GCAGC 2 cut(s) 735, 909
BstV2I GAAGAC 2 cut(s) 84, 135
BstX2I RGATCY 1 cut(s) 604
BstXI CCANNNNNNTGG 2 cut(s) 16, 964
BstYI RGATCY 1 cut(s) 604
BsuRI GGCC 4 cut(s) 38, 177, 625, 1073
BtgI CCRYGG 1 cut(s) 1048
BtsCI GGATG 1 cut(s) 578
BtsIMutI CAGTG 4 cut(s) 123, 902, 936, 1144
BtuMI TCGCGA 1 cut(s) 494
BveI ACCTGC 1 cut(s) 547
Cac8I GCNNGC 3 cut(s) 791, 836, 1107
CfoI GCGC 2 cut(s) 191, 715
Cfr13I GGNCC 2 cut(s) 300, 425
CpoI CGGWCCG 1 cut(s) 425
Csp6I GTAC 3 cut(s) 503, 595, 968
CspCI CAANNNNNGTGG 4 cut(s) 28, 63, 513, 548
CspI CGGWCCG 1 cut(s) 425
CviAII CATG 9 cut(s) 163, 292, 685, 780, 835, 958, 1049, 1102, 1199
CviQI GTAC 3 cut(s) 503, 595, 968
DdeI CTNAG 2 cut(s) 256, 1136
DpnI GATC 4 cut(s) 98, 254, 606, 908
DpnII GATC 4 cut(s) 96, 252, 604, 906
DriI GACNNNNNGTC 1 cut(s) 88
EaeI YGGCCR 2 cut(s) 36, 1071
Eam1104I CTCTTC 1 cut(s) 185
Eam1105I GACNNNNNGTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 185
Eco130I CCWWGG 1 cut(s) 1048
Eco147I AGGCCT 1 cut(s) 177
Eco24I GRGCYC 2 cut(s) 237, 661
Eco31I GGTCTC 1 cut(s) 649
Eco32I GATATC 1 cut(s) 387
Eco47I GGWCC 2 cut(s) 300, 425
Eco72I CACGTG 1 cut(s) 379
EcoO109I RGGNCCY 1 cut(s) 300
EcoRII CCWGG 2 cut(s) 261, 352
EcoRV GATATC 1 cut(s) 387
EcoT14I CCWWGG 1 cut(s) 1048
EcoT38I GRGCYC 2 cut(s) 237, 661
ErhI CCWWGG 1 cut(s) 1048
FaeI CATG 9 cut(s) 166, 295, 688, 783, 838, 961, 1052, 1105, 1202
FaqI GGGAC 1 cut(s) 728
FatI CATG 9 cut(s) 162, 291, 684, 779, 834, 957, 1048, 1101, 1198
FauI CCCGC 1 cut(s) 571
FbaI TGATCA 1 cut(s) 906
Fnu4HI GCNGC 3 cut(s) 547, 724, 898
FokI GGATG 1 cut(s) 585
FriOI GRGCYC 2 cut(s) 237, 661
Fsp4HI GCNGC 3 cut(s) 547, 724, 898
FspBI CTAG 1 cut(s) 627
GlaI GCGC 2 cut(s) 190, 714
GluI GCNGC 3 cut(s) 547, 724, 898
HaeIII GGCC 4 cut(s) 38, 177, 625, 1073
HapII CCGG 4 cut(s) 405, 428, 589, 608
HhaI GCGC 2 cut(s) 191, 715
Hin1II CATG 9 cut(s) 166, 295, 688, 783, 838, 961, 1052, 1105, 1202
Hin6I GCGC 2 cut(s) 189, 713
HinP1I GCGC 2 cut(s) 189, 713
HinfI GANTC 2 cut(s) 271, 990
HpaII CCGG 4 cut(s) 405, 428, 589, 608
HphI GGTGA 4 cut(s) 84, 368, 946, 1064
Hpy166II GTNNAC 1 cut(s) 842
Hpy188I TCNGA 3 cut(s) 284, 323, 708
Hpy188III TCNNGA 4 cut(s) 17, 493, 589, 690
Hpy8I GTNNAC 1 cut(s) 842
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 3 cut(s) 211, 223, 1212
HpyCH4III ACNGT 4 cut(s) 47, 118, 425, 940
HpyCH4IV ACGT 3 cut(s) 378, 531, 597
HpyCH4V TGCA 4 cut(s) 398, 437, 556, 723
HpyF3I CTNAG 2 cut(s) 256, 1136
HpySE526I ACGT 3 cut(s) 378, 531, 597
Hsp92II CATG 9 cut(s) 166, 295, 688, 783, 838, 961, 1052, 1105, 1202
HspAI GCGC 2 cut(s) 189, 713
Kpn2I TCCGGA 1 cut(s) 588
Ksp22I TGATCA 1 cut(s) 906
Kzo9I GATC 4 cut(s) 96, 252, 604, 906
LmnI GCTCC 1 cut(s) 407
Lsp1109I GCAGC 2 cut(s) 735, 909
MaeI CTAG 1 cut(s) 627
MaeII ACGT 3 cut(s) 378, 531, 597
MaeIII GTNAC 5 cut(s) 90, 448, 527, 855, 1066
MalI GATC 4 cut(s) 98, 254, 606, 908
MboI GATC 4 cut(s) 96, 252, 604, 906
MboII GAAGA 6 cut(s) 89, 140, 172, 208, 481, 1015
MflI RGATCY 1 cut(s) 604
MhlI GDGCHC 3 cut(s) 237, 378, 661
MlsI TGGCCA 1 cut(s) 38
MluCI AATT 3 cut(s) 324, 698, 1095
MluNI TGGCCA 1 cut(s) 38
MlyI GAGTC 1 cut(s) 280
Mox20I TGGCCA 1 cut(s) 38
MroI TCCGGA 1 cut(s) 588
MscI TGGCCA 1 cut(s) 38
MseI TTAA 1 cut(s) 348
MslI CAYNNNNRTG 3 cut(s) 248, 962, 1199
Msp20I TGGCCA 1 cut(s) 38
MspI CCGG 4 cut(s) 405, 428, 589, 608
MspR9I CCNGG 2 cut(s) 263, 354
MvaI CCWGG 2 cut(s) 263, 354
MvnI CGCG 1 cut(s) 494
NcoI CCATGG 1 cut(s) 1048
NdeII GATC 4 cut(s) 96, 252, 604, 906
NlaIII CATG 9 cut(s) 166, 295, 688, 783, 838, 961, 1052, 1105, 1202
NlaIV GGNNCC 2 cut(s) 302, 606
NmuCI GTSAC 4 cut(s) 90, 448, 855, 1066
NruI TCGCGA 1 cut(s) 494
NspI RCATGY 5 cut(s) 166, 688, 838, 1105, 1202
NspV TTCGAA 1 cut(s) 1092
OliI CACNNNNGTG 1 cut(s) 1199
PaeI GCATGC 1 cut(s) 838
PceI AGGCCT 1 cut(s) 177
PciI ACATGT 1 cut(s) 1198
PcsI WCGNNNNNNNCGW 3 cut(s) 69, 78, 246
PfeI GAWTC 1 cut(s) 990
PflMI CCANNNNNTGG 1 cut(s) 780
PkrI GCNGC 3 cut(s) 548, 725, 899
Ple19I CGATCG 1 cut(s) 99
PleI GAGTC 1 cut(s) 279
PmaCI CACGTG 1 cut(s) 379
PmlI CACGTG 1 cut(s) 379
PpsI GAGTC 1 cut(s) 279
Ppu21I YACGTR 2 cut(s) 379, 598
PpuMI RGGWCCY 1 cut(s) 300
PscI ACATGT 1 cut(s) 1198
Psp5II RGGWCCY 1 cut(s) 300
Psp6I CCWGG 2 cut(s) 261, 352
PspCI CACGTG 1 cut(s) 379
PspGI CCWGG 2 cut(s) 261, 352
PspN4I GGNNCC 2 cut(s) 302, 606
PspPI GGNCC 2 cut(s) 300, 425
PspPPI RGGWCCY 1 cut(s) 300
PsuI RGATCY 1 cut(s) 604
PvuI CGATCG 1 cut(s) 99
RruI TCGCGA 1 cut(s) 494
RsaI GTAC 3 cut(s) 504, 596, 969
RsaNI GTAC 3 cut(s) 503, 595, 968
RseI CAYNNNNRTG 3 cut(s) 248, 962, 1199
Rsr2I CGGWCCG 1 cut(s) 425
RsrII CGGWCCG 1 cut(s) 425
SaqAI TTAA 1 cut(s) 348
SatI GCNGC 3 cut(s) 547, 724, 898
Sau3AI GATC 4 cut(s) 96, 252, 604, 906
Sau96I GGNCC 2 cut(s) 300, 425
SchI GAGTC 1 cut(s) 280
ScrFI CCNGG 2 cut(s) 263, 354
SduI GDGCHC 3 cut(s) 237, 378, 661
SfcI CTRYAG 1 cut(s) 171
SfuI TTCGAA 1 cut(s) 1092
SinI GGWCC 2 cut(s) 300, 425
SmiMI CAYNNNNRTG 3 cut(s) 248, 962, 1199
SphI GCATGC 1 cut(s) 838
Sse9I AATT 3 cut(s) 324, 698, 1095
SseBI AGGCCT 1 cut(s) 177
SsiI CCGC 5 cut(s) 160, 226, 546, 578, 682
SspMI CTAG 1 cut(s) 627
StuI AGGCCT 1 cut(s) 177
StyD4I CCNGG 2 cut(s) 261, 352
StyI CCWWGG 1 cut(s) 1048
TaaI ACNGT 4 cut(s) 47, 118, 425, 940
TaiI ACGT 3 cut(s) 381, 534, 600
TaqI TCGA 5 cut(s) 63, 99, 332, 1092, 1187
TasI AATT 3 cut(s) 324, 698, 1095
TauI GCSGC 1 cut(s) 549
TfiI GAWTC 1 cut(s) 990
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TscAI CASTG 4 cut(s) 123, 909, 943, 1144
TseFI GTSAC 4 cut(s) 90, 448, 855, 1066
TseI GCWGC 2 cut(s) 723, 897
Tsp45I GTSAC 4 cut(s) 90, 448, 855, 1066
TspDTI ATGAA 3 cut(s) 90, 280, 768
TspGWI ACGGA 1 cut(s) 238
TspRI CASTG 4 cut(s) 123, 909, 943, 1144
Van91I CCANNNNNTGG 1 cut(s) 780
VpaK11BI GGWCC 2 cut(s) 300, 425
XapI RAATTY 1 cut(s) 698
XceI RCATGY 5 cut(s) 166, 688, 838, 1105, 1202
XcmI CCANNNNNNNNNTGG 1 cut(s) 1198
XspI CTAG 1 cut(s) 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.