Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003716

Physical Location & Seq

Genomic Coordinates Forward (+)

59995853 .. 60000884

Gene Structure 5032 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG456500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2253 bp

ATGGCTACCATACCTCTGGAAACCGAGCTTGTCGAGGCCAAACACGGTGGCAAAGAAGTTATCGACATTGACGATGAAGACGATGAGTTGTCACCGATCGAGGAGGTTCGTCTAACAGTGTCAAACGAAGACGACCCGACGCTTCCAGTATGGACATTCCGCATGTGGTCCATAGGCCTCTTCTCGTGCGCCCTCCTCTCCTTCCTCAACACCTTCTTCTCCTACCGCACCGAGCCCCTCGTCATCTCCGTGATCTCCGTCCAGGTGGCGAGTCTCCCCCTCGGAAAGTTCATGGCGAGGACCCTGCCCACGAGGAAGTTCCGAATTGGCTCGAAAGAGTTTTCACTTAATCCTGGTGAGTTCAACATCAAGGAGCACGTGTTGATATCGATTTTTGCAAATGCCGGAGCAGGGTTTGGGAGCGGTCCGGCTTATGCAGTTGGGATTGTGACTATCGTAAAGGCGTTTTATGTGAGGAACATATCTTTCTTGGCGAGTTGGATACTTGTTATTACCACGCAGGTTTTGGGGTATGGATGGGCGGGTATTCTCCGGAAGTACGTGGTGGATCCGGCTACAATGTGGTGGCCTAGTAGTCTGGTTCAGGTCTCTTTGTTTAGGGCTCTACACGAGAAAGACAACAACCGCATGTCCAGAGGAAAATTCTTTCTGATTGCGCTGGTATGCAGCTTCTCTTGGTATGTTGTCCCAGACTACCTTTTCACAACTATATCAACCATTTCATGGGTTTGCTGGCTTTTCCCCAAGTCAATAACAGCACATCAAATCGGGTCGGGCATGCGTGGACTTGGTATTGGGTCACTTACATTGGATTGGTCTGTCATAGCCTCGTACTTAGGCAGCCCACTGATCAGCCCATTTTTTGCCATTGTCAATATCACTGTTGGCTATATTCTCACCATGTATGTGGTATTACCGACTGCCTATTGGGGATTCAACTTATACAATGCCAAGAACTTCGCAATCTTCTCTAAAAACTTGTTTGATGACCATGGTGAAATATATAATGTCACGGCCATTGTCAATGACAAGTTCGAAATTGACATGCCTGCCTACAAAAAACAAGGACATATAAACCTCAGTGTGTTCTTTTCTCTGACCTACGGGATTGGCTTCGCTGGTGTTATATCGACCATCACACATGTGGCTCTATTCAATGGAAGGGAGATGTATGAGAAATACAAAGCTGCACATACTGGAAAGGTGGACATCCACACCAGATTGATGAGAAATTACAGAGACATACCTACCTGGTGGTTTCATATTCTGCTTTTGTTGTCGCTTGCACTGTCTCTGGCGTTATGCATTTTCATGAAAGATGAGGTACAACTGCCTTGGTGGGGACTCCTTTTTGCAGCTGCAATTGCATCGGTTTTCACTCTTCCGATTAGCGTTATAACGGCAACAACGAATCAGTCACCAGGACTAAACGTAATCACAGAGTATATAATGGGTTTGATATTACCTGGAGAACCAATAGCCAATGTATGCTTCAAAACCTATGGGTATATAAGCATGGCGCAGGCAATTTCCTTTCTGAGTGATTTCAAGTTAGGTCACTACATGAAGATCCCACCCATATCGATGTTCATAGTTCAGCTACTCTTCGTTGCTTTACAAAAGTGCATAGGAACTGTGATAGCCGGAACAGTCAATATTGGGGTGGCATGGTGGCTGCTAACTACTGTGGAAAACATATGTCAAGAAAGTTTACTCCCTCCTGATAGTCCTTGGACTTGTGTCAATGATGCTGTGTTTTTTGATGCCTCTGTAATTTGGGGTCTGGTCGGGCCAAAGCGAATATTTGGCTCCCTTGGATACTACTCAGCACTTAACTGGTTCTTCCTATTCGGTGCAATTGGACCTCTCATAGTATGGTTGTTGCATAAAGCTTTTCCAAGTCAAAAATGGATCGCGCTGATCAACCTTCCCGTGCTTTTGGGAGCAACGGCTGTAATGCCACCGGCTTCAACTGTGAACTTCAATTGCTGGATTATTGTTGGACTTGTTTTCAGTTACTATGTATTCAGATACAGAAAGACATGGTGGCAAAGGTACAATTATGTTCTTTCAGCTGCCTTAGATGCTGGAGTAGCTTTCATGGCGGTGCTTGTATATTTATCAATGAATGGTAAGGGCATATCTTGGTGGGGAACAGATGGGGAACACTGTGAGCTGGCTACCTGTCCAACAGCTGAAGGCTTGGATCTTGGTCATGCTTGTGTATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

750

Amino Acids

83.8

Weight (kDa)

6.7

Isoelectric Point (pI)

27.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	50 - 715	2.4e-175	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09930
fragaria_vesca	FvH4_5g34010 FvH4_5g34011
malus_domestica	MD08G1206700.v1.1 MD15G1390200.v1.1 MD15G1390400.v1.1
prunus_persica	Prupe.1G539200_v2.0.a1 Prupe.1G539300_v2.0.a1
pyrus_communis	pycom15g34950 pycom15g34960
rosa_chinensis	RchiOBHm_Chr7g0233451 RchiOBHm_Chr7g0233471
rosa_laevigata	RLG00000001268 RLG00000001269
rosa_multiflora	Rmu_sc0000029.1_g000038 Rmu_sc0000029.1_g000051
rosa_roxburghii	Rroxscaffold_3G00227270 Rroxscaffold_3G00227290
rosa_rugosa	Rorug07G0280800 Rorug07G0280800
rosa_samantha	Rh7AG436600 Rh7AG436700 Rh7BG409700 Rh7BG409800 Rh7CG456500 Rh7CG456700 Rh7DG425800 Rh7DG425900
rosa_wichuraiana	Rw0G008530 Rw0G022500 Rw7G036000 Rw7G036010 Rw7G036030 Rw7G036040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1418
Acc36I	ACCTGC	1 cut(s)	511
AccB7I	CCANNNNNTGG	1 cut(s)	744
AccBSI	CCGCTC	1 cut(s)	423
AccII	CGCG	1 cut(s)	1937
AccIII	TCCGGA	1 cut(s)	552
AciI	CCGC	6 cut(s)	160, 226, 423, 542, 646, 2126
AclWI	GGATC	5 cut(s)	563, 576, 1585, 1940, 2235
AcoI	YGGCCR	1 cut(s)	1035
AcsI	RAATTY	1 cut(s)	662
AcuI	CTGAAG	1 cut(s)	2238
AcvI	CACGTG	1 cut(s)	379
AfaI	GTAC	4 cut(s)	560, 854, 1347, 2078
AfiI	CCNNNNNNNGG	3 cut(s)	411, 744, 1361
AflIII	ACRYGT	2 cut(s)	378, 1162
AgsI	TTSAA	7 cut(s)	364, 958, 1177, 1516, 1570, 1992, 2005
AjnI	CCWGG	5 cut(s)	261, 352, 1271, 1441, 1486
AjuI	GAANNNNNNNTTGG	2 cut(s)	1496, 1528
AleI	CACNNNNGTG	1 cut(s)	1163
Alw21I	GWGCWC	1 cut(s)	378
Alw26I	GTCTC	4 cut(s)	278, 613, 1254, 1317
AlwI	GGATC	5 cut(s)	563, 576, 1585, 1940, 2235
Aor13HI	TCCGGA	1 cut(s)	552
AoxI	GGCC	5 cut(s)	36, 175, 587, 1035, 1811
ApeKI	GCWGC	7 cut(s)	687, 861, 1208, 1376, 1379, 1696, 2096
ApoI	RAATTY	1 cut(s)	662
AspLEI	GCGC	4 cut(s)	191, 679, 1543, 1939
AspS9I	GGNCC	5 cut(s)	168, 300, 425, 1811, 1883
AsuHPI	GGTGA	5 cut(s)	84, 368, 910, 1028, 1431
AsuII	TTCGAA	1 cut(s)	1056
AvaII	GGWCC	4 cut(s)	168, 300, 425, 1883
BamHI	GGATCC	1 cut(s)	568
BanII	GRGCYC	2 cut(s)	237, 625
BauI	CACGAG	3 cut(s)	184, 310, 629
BbrPI	CACGTG	1 cut(s)	379
BbsI	GAAGAC	2 cut(s)	84, 135
Bbv12I	GWGCWC	1 cut(s)	378
BbvI	GCAGC	7 cut(s)	699, 873, 1195, 1366, 1388, 1683, 2083
BccI	CCATC	3 cut(s)	531, 1163, 2174
BceAI	ACGGC	3 cut(s)	1050, 1437, 1986
BcgI	CGANNNNNNTGC	4 cut(s)	286, 320, 1371, 1405
BciT130I	CCWGG	5 cut(s)	263, 354, 1273, 1443, 1488
BciVI	GTATCC	2 cut(s)	495, 1832
BclI	TGATCA	2 cut(s)	870, 1941
BcoDI	GTCTC	4 cut(s)	278, 613, 1254, 1317
BfaI	CTAG	1 cut(s)	591
BfuAI	ACCTGC	1 cut(s)	511
BfuI	GTATCC	2 cut(s)	495, 1832
BisI	GCNGC	7 cut(s)	688, 862, 1209, 1377, 1380, 1697, 2097
BlsI	GCNGC	7 cut(s)	689, 863, 1210, 1378, 1381, 1698, 2098
Bme1390I	CCNGG	5 cut(s)	263, 354, 1273, 1443, 1488
Bme18I	GGWCC	4 cut(s)	168, 300, 425, 1883
BmgT120I	GGNCC	5 cut(s)	168, 300, 425, 1811, 1883
BmiI	GGNNCC	3 cut(s)	302, 570, 1831
BmrFI	CCNGG	5 cut(s)	263, 354, 1273, 1443, 1488
BmsI	GCATC	4 cut(s)	1397, 1759, 1774, 2095
BoxI	GACNNNNGTC	1 cut(s)	1760
BpiI	GAAGAC	2 cut(s)	84, 135
BpmI	CTGGAG	2 cut(s)	1509, 2130
Bpu14I	TTCGAA	1 cut(s)	1056
Bsa29I	ATCGAT	2 cut(s)	389, 1604
BsaAI	YACGTR	2 cut(s)	379, 562
BsaI	GGTCTC	1 cut(s)	613
BsaJI	CCNNGG	5 cut(s)	280, 1012, 1355, 1751, 1834
BsaWI	WCCGGW	1 cut(s)	552
BsaXI	ACNNNNNCTCC	2 cut(s)	365, 395
Bsc4I	CCNNNNNNNGG	3 cut(s)	411, 744, 1361
Bse118I	RCCGGY	1 cut(s)	1984
Bse1I	ACTGG	3 cut(s)	146, 1222, 1862
BseAI	TCCGGA	1 cut(s)	552
BseBI	CCWGG	5 cut(s)	263, 354, 1273, 1443, 1488
BseCI	ATCGAT	2 cut(s)	389, 1604
BseDI	CCNNGG	5 cut(s)	280, 1012, 1355, 1751, 1834
BseGI	GGATG	2 cut(s)	542, 1230
BseLI	CCNNNNNNNGG	3 cut(s)	411, 744, 1361
BseMII	CTCAG	3 cut(s)	1114, 1550, 1860
BseNI	ACTGG	3 cut(s)	146, 1222, 1862
BseRI	GAGGAG	2 cut(s)	116, 185
BseXI	GCAGC	7 cut(s)	699, 873, 1195, 1366, 1388, 1683, 2083
BsgI	GTGCAG	1 cut(s)	1194
Bsh1236I	CGCG	1 cut(s)	1937
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	5 cut(s)	38, 177, 589, 1037, 1813
BshVI	ATCGAT	2 cut(s)	389, 1604
BsiEI	CGRYCG	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	378
BsiSI	CCGG	6 cut(s)	405, 428, 553, 572, 1665, 1985
BslFI	GGGAC	2 cut(s)	692, 1377
BslI	CCNNNNNNNGG	3 cut(s)	411, 744, 1361
BsmAI	GTCTC	4 cut(s)	278, 613, 1254, 1317
BsmFI	GGGAC	2 cut(s)	692, 1377
BsnI	GGCC	5 cut(s)	38, 177, 589, 1037, 1813
Bso31I	GGTCTC	1 cut(s)	613
Bsp119I	TTCGAA	1 cut(s)	1056
Bsp1286I	GDGCHC	3 cut(s)	237, 378, 625
Bsp13I	TCCGGA	1 cut(s)	552
Bsp143I	GATC	8 cut(s)	96, 252, 568, 870, 1590, 1932, 1941, 2227
Bsp19I	CCATGG	1 cut(s)	1012
BspACI	CCGC	6 cut(s)	160, 226, 423, 542, 646, 2126
BspANI	GGCC	5 cut(s)	38, 177, 589, 1037, 1813
BspCNI	CTCAG	3 cut(s)	1113, 1551, 1859
BspDI	ATCGAT	2 cut(s)	389, 1604
BspEI	TCCGGA	1 cut(s)	552
BspFNI	CGCG	1 cut(s)	1937
BspHI	TCATGA	1 cut(s)	1332
BspLI	GGNNCC	3 cut(s)	302, 570, 1831
BspMI	ACCTGC	1 cut(s)	511
BspPI	GGATC	5 cut(s)	563, 576, 1585, 1940, 2235
BspT104I	TTCGAA	1 cut(s)	1056
BspTNI	GGTCTC	1 cut(s)	613
BsrBI	CCGCTC	1 cut(s)	423
BsrFI	RCCGGY	1 cut(s)	1984
BsrI	ACTGG	3 cut(s)	146, 1222, 1862
BssAI	RCCGGY	1 cut(s)	1984
BssECI	CCNNGG	5 cut(s)	280, 1012, 1355, 1751, 1834
BssMI	GATC	8 cut(s)	96, 252, 568, 870, 1590, 1932, 1941, 2227
BssSI	CACGAG	3 cut(s)	184, 310, 629
BssT1I	CCWWGG	4 cut(s)	1012, 1355, 1751, 1834
Bst2BI	CACGAG	3 cut(s)	184, 310, 629
Bst2UI	CCWGG	5 cut(s)	263, 354, 1273, 1443, 1488
Bst4CI	ACNGT	9 cut(s)	47, 118, 904, 1311, 1657, 1672, 1708, 1996, 2192
Bst6I	CTCTTC	3 cut(s)	185, 1407, 1631
BstBAI	YACGTR	2 cut(s)	379, 562
BstBI	TTCGAA	1 cut(s)	1056
BstC8I	GCNNGC	6 cut(s)	755, 800, 1071, 1305, 1545, 2199
BstDEI	CTNAG	5 cut(s)	856, 1100, 1559, 1846, 2101
BstDSI	CCRYGG	1 cut(s)	1012
BstF5I	GGATG	2 cut(s)	542, 1230
BstFNI	CGCG	1 cut(s)	1937
BstHHI	GCGC	4 cut(s)	191, 679, 1543, 1939
BstKTI	GATC	8 cut(s)	99, 255, 571, 873, 1593, 1935, 1944, 2230
BstMAI	GTCTC	4 cut(s)	278, 613, 1254, 1317
BstMBI	GATC	8 cut(s)	96, 252, 568, 870, 1590, 1932, 1941, 2227
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	4 cut(s)	1385, 2105, 2114, 2123
BstNI	CCWGG	5 cut(s)	263, 354, 1273, 1443, 1488
BstNSI	RCATGY	5 cut(s)	166, 652, 802, 1069, 1166
BstPAI	GACNNNNGTC	1 cut(s)	1760
BstSCI	CCNGG	5 cut(s)	261, 352, 1271, 1441, 1486
BstUI	CGCG	1 cut(s)	1937
BstV1I	GCAGC	7 cut(s)	699, 873, 1195, 1366, 1388, 1683, 2083
BstV2I	GAAGAC	2 cut(s)	84, 135
BstX2I	RGATCY	3 cut(s)	568, 1590, 2227
BstXI	CCANNNNNNTGG	2 cut(s)	16, 928
BstYI	RGATCY	3 cut(s)	568, 1590, 2227
Bsu15I	ATCGAT	2 cut(s)	389, 1604
BsuI	GTATCC	2 cut(s)	495, 1832
BsuRI	GGCC	5 cut(s)	38, 177, 589, 1037, 1813
BsuTUI	ATCGAT	2 cut(s)	389, 1604
BtgI	CCRYGG	1 cut(s)	1012
BtsCI	GGATG	2 cut(s)	542, 1230
BtsIMutI	CAGTG	6 cut(s)	123, 866, 900, 1108, 1307, 2188
BveI	ACCTGC	1 cut(s)	511
Cac8I	GCNNGC	6 cut(s)	755, 800, 1071, 1305, 1545, 2199
CciI	TCATGA	1 cut(s)	1332
CfoI	GCGC	4 cut(s)	191, 679, 1543, 1939
Cfr10I	RCCGGY	1 cut(s)	1984
Cfr13I	GGNCC	5 cut(s)	168, 300, 425, 1811, 1883
ClaI	ATCGAT	2 cut(s)	389, 1604
CpoI	CGGWCCG	1 cut(s)	425
CseI	GACGC	1 cut(s)	148
CsiI	ACCWGGT	1 cut(s)	1271
Csp6I	GTAC	4 cut(s)	559, 853, 1346, 2077
CspCI	CAANNNNNGTGG	2 cut(s)	28, 63
CspI	CGGWCCG	1 cut(s)	425
CviQI	GTAC	4 cut(s)	559, 853, 1346, 2077
DdeI	CTNAG	5 cut(s)	856, 1100, 1559, 1846, 2101
DpnI	GATC	8 cut(s)	98, 254, 570, 872, 1592, 1934, 1943, 2229
DpnII	GATC	8 cut(s)	96, 252, 568, 870, 1590, 1932, 1941, 2227
EaeI	YGGCCR	1 cut(s)	1035
Eam1104I	CTCTTC	3 cut(s)	185, 1407, 1631
EarI	CTCTTC	3 cut(s)	185, 1407, 1631
Eco130I	CCWWGG	4 cut(s)	1012, 1355, 1751, 1834
Eco147I	AGGCCT	1 cut(s)	177
Eco24I	GRGCYC	2 cut(s)	237, 625
Eco31I	GGTCTC	1 cut(s)	613
Eco32I	GATATC	1 cut(s)	387
Eco47I	GGWCC	4 cut(s)	168, 300, 425, 1883
Eco57I	CTGAAG	1 cut(s)	2238
Eco72I	CACGTG	1 cut(s)	379
EcoO109I	RGGNCCY	1 cut(s)	300
EcoRII	CCWGG	5 cut(s)	261, 352, 1271, 1441, 1486
EcoRV	GATATC	1 cut(s)	387
EcoT14I	CCWWGG	4 cut(s)	1012, 1355, 1751, 1834
EcoT22I	ATGCAT	1 cut(s)	1328
EcoT38I	GRGCYC	2 cut(s)	237, 625
ErhI	CCWWGG	4 cut(s)	1012, 1355, 1751, 1834
FaqI	GGGAC	2 cut(s)	692, 1377
FauI	CCCGC	1 cut(s)	535
FauNDI	CATATG	1 cut(s)	1718
FbaI	TGATCA	2 cut(s)	870, 1941
Fnu4HI	GCNGC	7 cut(s)	688, 862, 1209, 1377, 1380, 1697, 2097
FokI	GGATG	2 cut(s)	549, 1217
FriOI	GRGCYC	2 cut(s)	237, 625
Fsp4HI	GCNGC	7 cut(s)	688, 862, 1209, 1377, 1380, 1697, 2097
FspBI	CTAG	1 cut(s)	591
GlaI	GCGC	4 cut(s)	190, 678, 1542, 1938
GluI	GCNGC	7 cut(s)	688, 862, 1209, 1377, 1380, 1697, 2097
GsuI	CTGGAG	2 cut(s)	1509, 2130
HaeIII	GGCC	5 cut(s)	38, 177, 589, 1037, 1813
HapII	CCGG	6 cut(s)	405, 428, 553, 572, 1665, 1985
HgaI	GACGC	1 cut(s)	148
HhaI	GCGC	4 cut(s)	191, 679, 1543, 1939
Hin6I	GCGC	4 cut(s)	189, 677, 1541, 1937
HinP1I	GCGC	4 cut(s)	189, 677, 1541, 1937
HindIII	AAGCTT	1 cut(s)	1911
HinfI	GANTC	4 cut(s)	271, 954, 1365, 1432
HpaII	CCGG	6 cut(s)	405, 428, 553, 572, 1665, 1985
HphI	GGTGA	5 cut(s)	84, 368, 910, 1028, 1431
Hpy166II	GTNNAC	4 cut(s)	806, 1228, 1733, 1999
Hpy188I	TCNGA	7 cut(s)	284, 323, 672, 1119, 1407, 1560, 2051
Hpy188III	TCNNGA	6 cut(s)	17, 553, 654, 1333, 1724, 1742
Hpy8I	GTNNAC	4 cut(s)	806, 1228, 1733, 1999
Hpy99I	CGWCG	1 cut(s)	142
HpyAV	CCTTC	5 cut(s)	211, 223, 1176, 1958, 2213
HpyCH4III	ACNGT	9 cut(s)	47, 118, 904, 1311, 1657, 1672, 1708, 1996, 2192
HpyCH4IV	ACGT	3 cut(s)	378, 561, 1452
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1385, 2105, 2114, 2123
HpyF3I	CTNAG	5 cut(s)	856, 1100, 1559, 1846, 2101
HpySE526I	ACGT	3 cut(s)	378, 561, 1452
HspAI	GCGC	4 cut(s)	189, 677, 1541, 1937
Kpn2I	TCCGGA	1 cut(s)	552
Ksp22I	TGATCA	2 cut(s)	870, 1941
Kzo9I	GATC	8 cut(s)	96, 252, 568, 870, 1590, 1932, 1941, 2227
LmnI	GCTCC	5 cut(s)	373, 407, 420, 1835, 1964
Lsp1109I	GCAGC	7 cut(s)	699, 873, 1195, 1366, 1388, 1683, 2083
LweI	GCATC	4 cut(s)	1397, 1759, 1774, 2095
MabI	ACCWGGT	1 cut(s)	1271
MaeI	CTAG	1 cut(s)	591
MaeII	ACGT	3 cut(s)	378, 561, 1452
MaeIII	GTNAC	7 cut(s)	90, 448, 819, 1030, 1437, 1577, 2036
MalI	GATC	8 cut(s)	98, 254, 570, 872, 1592, 1934, 1943, 2229
MbiI	CCGCTC	1 cut(s)	423
MboI	GATC	8 cut(s)	96, 252, 568, 870, 1590, 1932, 1941, 2227
MboII	GAAGA	9 cut(s)	89, 140, 172, 208, 979, 1394, 1600, 1618, 1855
MfeI	CAATTG	3 cut(s)	1383, 1878, 2005
MflI	RGATCY	3 cut(s)	568, 1590, 2227
MhlI	GDGCHC	3 cut(s)	237, 378, 625
MlyI	GAGTC	2 cut(s)	280, 1359
MmeI	TCCRAC	3 cut(s)	479, 2002, 2234
Mph1103I	ATGCAT	1 cut(s)	1328
MroI	TCCGGA	1 cut(s)	552
MseI	TTAA	2 cut(s)	348, 1854
MslI	CAYNNNNRTG	7 cut(s)	248, 926, 1163, 1331, 1604, 2126, 2241
MspA1I	CMGCKG	3 cut(s)	1379, 2096, 2216
MspI	CCGG	6 cut(s)	405, 428, 553, 572, 1665, 1985
MspR9I	CCNGG	5 cut(s)	263, 354, 1273, 1443, 1488
MunI	CAATTG	3 cut(s)	1383, 1878, 2005
MvaI	CCWGG	5 cut(s)	263, 354, 1273, 1443, 1488
MvnI	CGCG	1 cut(s)	1937
MwoI	GCNNNNNNNGC	4 cut(s)	1385, 2105, 2114, 2123
NcoI	CCATGG	1 cut(s)	1012
NdeI	CATATG	1 cut(s)	1718
NdeII	GATC	8 cut(s)	96, 252, 568, 870, 1590, 1932, 1941, 2227
NlaIV	GGNNCC	3 cut(s)	302, 570, 1831
NmuCI	GTSAC	6 cut(s)	90, 448, 819, 1030, 1437, 1577
NsiI	ATGCAT	1 cut(s)	1328
NspI	RCATGY	5 cut(s)	166, 652, 802, 1069, 1166
NspV	TTCGAA	1 cut(s)	1056
OliI	CACNNNNGTG	1 cut(s)	1163
PaeI	GCATGC	1 cut(s)	802
PagI	TCATGA	1 cut(s)	1332
PceI	AGGCCT	1 cut(s)	177
PciI	ACATGT	1 cut(s)	1162
PcsI	WCGNNNNNNNCGW	4 cut(s)	69, 78, 246, 1427
PfeI	GAWTC	2 cut(s)	954, 1432
PflMI	CCANNNNNTGG	1 cut(s)	744
PkrI	GCNGC	7 cut(s)	689, 863, 1210, 1378, 1381, 1698, 2098
Ple19I	CGATCG	1 cut(s)	99
PleI	GAGTC	2 cut(s)	279, 1359
PmaCI	CACGTG	1 cut(s)	379
PmlI	CACGTG	1 cut(s)	379
PpsI	GAGTC	2 cut(s)	279, 1359
Ppu21I	YACGTR	2 cut(s)	379, 562
PpuMI	RGGWCCY	1 cut(s)	300
PscI	ACATGT	1 cut(s)	1162
PshAI	GACNNNNGTC	1 cut(s)	1760
PsiI	TTATAA	1 cut(s)	1418
Psp5II	RGGWCCY	1 cut(s)	300
Psp6I	CCWGG	5 cut(s)	261, 352, 1271, 1441, 1486
PspCI	CACGTG	1 cut(s)	379
PspGI	CCWGG	5 cut(s)	261, 352, 1271, 1441, 1486
PspN4I	GGNNCC	3 cut(s)	302, 570, 1831
PspPI	GGNCC	5 cut(s)	168, 300, 425, 1811, 1883
PspPPI	RGGWCCY	1 cut(s)	300
PsuI	RGATCY	3 cut(s)	568, 1590, 2227
PvuI	CGATCG	1 cut(s)	99
PvuII	CAGCTG	3 cut(s)	1379, 2096, 2216
RsaI	GTAC	4 cut(s)	560, 854, 1347, 2078
RsaNI	GTAC	4 cut(s)	559, 853, 1346, 2077
RseI	CAYNNNNRTG	7 cut(s)	248, 926, 1163, 1331, 1604, 2126, 2241
Rsr2I	CGGWCCG	1 cut(s)	425
RsrII	CGGWCCG	1 cut(s)	425
SaqAI	TTAA	2 cut(s)	348, 1854
SatI	GCNGC	7 cut(s)	688, 862, 1209, 1377, 1380, 1697, 2097
Sau3AI	GATC	8 cut(s)	96, 252, 568, 870, 1590, 1932, 1941, 2227
Sau96I	GGNCC	5 cut(s)	168, 300, 425, 1811, 1883
SchI	GAGTC	2 cut(s)	280, 1359
ScrFI	CCNGG	5 cut(s)	263, 354, 1273, 1443, 1488
SduI	GDGCHC	3 cut(s)	237, 378, 625
SexAI	ACCWGGT	1 cut(s)	1271
SfaNI	GCATC	4 cut(s)	1397, 1759, 1774, 2095
SfuI	TTCGAA	1 cut(s)	1056
SinI	GGWCC	4 cut(s)	168, 300, 425, 1883
SmiMI	CAYNNNNRTG	7 cut(s)	248, 926, 1163, 1331, 1604, 2126, 2241
SphI	GCATGC	1 cut(s)	802
SseBI	AGGCCT	1 cut(s)	177
SsiI	CCGC	6 cut(s)	160, 226, 423, 542, 646, 2126
SspI	AATATT	2 cut(s)	1678, 1824
SspMI	CTAG	1 cut(s)	591
StuI	AGGCCT	1 cut(s)	177
StyD4I	CCNGG	5 cut(s)	261, 352, 1271, 1441, 1486
StyI	CCWWGG	4 cut(s)	1012, 1355, 1751, 1834
TaaI	ACNGT	9 cut(s)	47, 118, 904, 1311, 1657, 1672, 1708, 1996, 2192
TaiI	ACGT	3 cut(s)	381, 564, 1455
TaqI	TCGA	8 cut(s)	33, 63, 99, 332, 389, 1056, 1151, 1604
TfiI	GAWTC	2 cut(s)	954, 1432
Tru1I	TTAA	2 cut(s)	348, 1854
Tru9I	TTAA	2 cut(s)	348, 1854
TscAI	CASTG	6 cut(s)	123, 873, 907, 1108, 1314, 2195
TseFI	GTSAC	6 cut(s)	90, 448, 819, 1030, 1437, 1577
TseI	GCWGC	7 cut(s)	687, 861, 1208, 1376, 1379, 1696, 2096
Tsp45I	GTSAC	6 cut(s)	90, 448, 819, 1030, 1437, 1577
TspGWI	ACGGA	2 cut(s)	238, 247
TspRI	CASTG	6 cut(s)	123, 873, 907, 1108, 1314, 2195
Van91I	CCANNNNNTGG	1 cut(s)	744
VpaK11BI	GGWCC	4 cut(s)	168, 300, 425, 1883
XapI	RAATTY	1 cut(s)	662
XceI	RCATGY	5 cut(s)	166, 652, 802, 1069, 1166
XcmI	CCANNNNNNNNNTGG	3 cut(s)	523, 1162, 1926
XspI	CTAG	1 cut(s)	591
Zsp2I	ATGCAT	1 cut(s)	1328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.