Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003716

Physical Location & Seq

Genomic Coordinates Reverse (-)

11369559 .. 11373505

Gene Structure 3947 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00227270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2007 bp

ATGGACATAGAGTCCACCAAACTCGACATGGACGACGACGTGTCACCCATCGAAGAGGTCCGCTTAACGGTCTCGAACGAAGACGACCCGACCCTTCCAGTATGGACCTTCCGGATGTGGACCCTAGGGATCCTCTCCTGTGGTCTCCTCTCCTTCCTCAACACTTTCTTCTCCTACCGCACCGAGCCCCTGATCATCACCATGATCACCGTACAGGTGGCGACACTGCCCATCGGACGGTTCATGGCTAGGGTACTGCCCACAAGGAAGTTTTCGATCGGGTCGATGGAGTTCTCGCTCAACCCGGGTCCGTTTAACAAGAAGGAGCACGTGCTGATATCCATATTTGCCAACGCCGGATCCGGGTTCGGAGGCGGAACGGCTTATGCTGTTGGCATTGTCGATATAATTAAGGCATTTTATCACAGGAAGATATCGTTCTTGGCCAGTTGGCTTCTTGTCAATACCACACAGGCATTGGGGTATGGGTGGGCTGGAATTCTCCGAAAGTACGTGGTGGATCCGGGAGAGATGTGGTGGCCCTCTAGTGTAGTTCAGGTCAACTTGTTCGACTTCTCTTGGTATGTTGTCCCAGGCTACCTTTTCCCAACTTTATCAACCATTTCATGGATTTGTTGGATATACCCCAAGTCAGTAACAGTGCAACAAATTGCATCCGGCATGCGTGGACTTGGTGTTGGTGCATTGTCTCTCGACTGGTCTGTTGTAGCCTCGTACCTTCAAAGCCCTTTGATTAGCCCTTTCTTTGCCACTGTCAATGTTGCAGTTGGCTATGTTGCTTTCATGTTTGTGATACTGCCAATTGCCTACTGGGGAGTCAATTTATACAATGCCAAGAACTTCCCAATCTTCTCTTCCCATTTGTTTGATGCCCATGGTCAAGTATATAACACTTCAGCAATAGTGAATGACAAATTTCAAATTGACATGCCGGCGTATGAAAAACAAGGACGTGTAAACTTAAGTGTGTTTTTTGCTCTGACATATGGTATTGGCTTTGCGGCCATTATATCAACCCTCACTCACGTGGCCCTCTTCAATGGAAGGGAGATGTATGAACAATTTCGAGCATCGAAGAAGGATGGAAAGGTAGACGTACACACCAAATTAATGAGGAAATACAAGGACATACCTAACTGGTGGTTTCATCTTACTCTTTTGGTGTCATTTGGAATCGCTCTGGCACTATGCATTTTCATGAAAGATGAGATTCCAATGCCGTGTTTAGTGGGGTTTAATGGATCTGAGTGGCGAAAATTAGACCGAGTGAATTGTGAGTTTGGGGCCATGAGTCAGGCAATTTCCTTTCTCAATGATTTCAAGCTTGGCCATTACATGAAGATTCCGCCCAGATCAATGTTTTTAGTTCAGTTGATAGGAACTATTATAGCTGGAACAATCAATATCGGGGTTGCATGGTGGCTGTTATCTACTGTGGAAAACATATGTCAAGATCAATTACTCCCTCCTAATAGTCCTTGGACTTGTCCTGGTGATCGCGTCTTCTTTGATGCATCTGTCGTTTGGGGTCTTGTCGGTCCAAAGCGGATATTTGGCCCTCTTGGAAACTACCAAGCACTCAACTGGTTCTTCCTTATAGGTGCATTTGGACCACTCTTGGTATGGTTGTTGCACAGAGCTTTTCCCAGTTATAAATGGATTGGACTTATCAACCTTCCAGTGCTTTTGAACGCAACAGCTGCAATGCCACCGGCTACATCAGTAAACTTCAATTGCTGGATTGTTATTGGAACTATTTTCGGCTACTACATCTTTAGATATAGAACGGCATGGTGGCAGAGGTACAATTATGTTCTTTCGGCTGCCTTAGATGCTGGATTGGCTTGCATGGCGGTGCTCTTATACTTCACATTAACCATGAACGGGAAGAGCATATCTTGGTGGGGTGCGGATGGTGAACACTGTGAATTGGCTTCATGTCCCACAGCCAAAGGAATCGTTGTTGATGGTTGTCCTGTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

668

Amino Acids

74.91

Weight (kDa)

8.32

Isoelectric Point (pI)

27.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	34 - 190	1.6e-39	OPT oligopeptide transporter protein
OPT	PF03169	192 - 413	1.4e-50	OPT oligopeptide transporter protein
OPT	PF03169	434 - 631	6.6e-53	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09930
fragaria_vesca	FvH4_5g34010 FvH4_5g34011
malus_domestica	MD08G1206700.v1.1 MD15G1390200.v1.1 MD15G1390400.v1.1
prunus_persica	Prupe.1G539200_v2.0.a1 Prupe.1G539300_v2.0.a1
pyrus_communis	pycom15g34950 pycom15g34960
rosa_chinensis	RchiOBHm_Chr7g0233451 RchiOBHm_Chr7g0233471
rosa_laevigata	RLG00000001268 RLG00000001269
rosa_multiflora	Rmu_sc0000029.1_g000038 Rmu_sc0000029.1_g000051
rosa_roxburghii	Rroxscaffold_3G00227270 Rroxscaffold_3G00227290
rosa_rugosa	Rorug07G0280800 Rorug07G0280800
rosa_samantha	Rh7AG436600 Rh7AG436700 Rh7BG409700 Rh7BG409800 Rh7CG456500 Rh7CG456700 Rh7DG425800 Rh7DG425900
rosa_wichuraiana	Rw0G008530 Rw0G022500 Rw7G036000 Rw7G036010 Rw7G036030 Rw7G036040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1674
AccB7I	CCANNNNNTGG	1 cut(s)	627
AccI	GTMKAC	1 cut(s)	1113
AccII	CGCG	1 cut(s)	1521
AccIII	TCCGGA	1 cut(s)	111
AciI	CCGC	8 cut(s)	61, 178, 375, 1022, 1367, 1567, 1874, 1931
AclWI	GGATC	7 cut(s)	124, 137, 354, 367, 515, 528, 1270
AcoI	YGGCCR	3 cut(s)	444, 1023, 1348
AcsI	RAATTY	2 cut(s)	498, 935
AcuI	CTGAAG	1 cut(s)	900
AcvI	CACGTG	2 cut(s)	331, 1048
AfaI	GTAC	6 cut(s)	213, 255, 512, 737, 1119, 1826
AfiI	CCNNNNNNNGG	5 cut(s)	67, 237, 363, 627, 1905
AflII	CTTAAG	1 cut(s)	982
AflIII	ACRYGT	2 cut(s)	39, 973
AgsI	TTSAA	6 cut(s)	743, 941, 1060, 1342, 1711, 1753
AhdI	GACNNNNNGTC	2 cut(s)	10, 40
AjiI	CACGTC	2 cut(s)	40, 974
AjnI	CCWGG	2 cut(s)	592, 1510
AjuI	GAANNNNNNNTTGG	2 cut(s)	859, 891
AleI	CACNNNNGTG	1 cut(s)	1046
AluBI	AGCT	4 cut(s)	1345, 1412, 1661, 1721
AluI	AGCT	4 cut(s)	1345, 1412, 1661, 1721
Alw21I	GWGCWC	2 cut(s)	330, 1881
Alw26I	GTCTC	3 cut(s)	76, 149, 714
AlwI	GGATC	7 cut(s)	124, 137, 354, 367, 515, 528, 1270
Ama87I	CYCGRG	1 cut(s)	304
Aor13HI	TCCGGA	1 cut(s)	111
AoxI	GGCC	7 cut(s)	444, 539, 1023, 1050, 1305, 1348, 1576
ApeKI	GCWGC	2 cut(s)	1721, 1844
ApoI	RAATTY	2 cut(s)	498, 935
AseI	ATTAAT	1 cut(s)	1130
Asp700I	GAANNNNTTC	1 cut(s)	1083
AspA2I	CCTAGG	1 cut(s)	124
AsuC2I	CCSGG	4 cut(s)	305, 306, 364, 525
AsuHPI	GGTGA	5 cut(s)	36, 190, 199, 1526, 1949
AvaI	CYCGRG	1 cut(s)	304
AvaII	GGWCC	6 cut(s)	58, 105, 120, 308, 1559, 1631
AvrII	CCTAGG	1 cut(s)	124
BalI	TGGCCA	2 cut(s)	446, 1350
BamHI	GGATCC	3 cut(s)	129, 359, 520
BanII	GRGCYC	1 cut(s)	189
BbrPI	CACGTG	2 cut(s)	331, 1048
BbsI	GAAGAC	3 cut(s)	87, 1516, 1993
Bbv12I	GWGCWC	2 cut(s)	330, 1881
BbvI	GCAGC	2 cut(s)	1708, 1831
BccI	CCATC	6 cut(s)	56, 239, 280, 1097, 1928, 1982
BceAI	ACGGC	3 cut(s)	396, 1225, 1824
BciT130I	CCWGG	2 cut(s)	594, 1512
BclI	TGATCA	2 cut(s)	192, 204
BcnI	CCSGG	4 cut(s)	305, 306, 364, 525
BcoDI	GTCTC	3 cut(s)	76, 149, 714
BfaI	CTAG	3 cut(s)	125, 249, 546
BfrI	CTTAAG	1 cut(s)	982
BisI	GCNGC	3 cut(s)	1023, 1722, 1845
BlnI	CCTAGG	1 cut(s)	124
BlsI	GCNGC	3 cut(s)	1024, 1723, 1846
Bme1390I	CCNGG	6 cut(s)	305, 306, 364, 525, 594, 1512
Bme18I	GGWCC	6 cut(s)	58, 105, 120, 308, 1559, 1631
BmeRI	GACNNNNNGTC	2 cut(s)	10, 40
BmeT110I	CYCGRG	1 cut(s)	304
BmgBI	CACGTC	2 cut(s)	40, 974
BmiI	GGNNCC	6 cut(s)	122, 131, 309, 361, 522, 1306
BmrFI	CCNGG	6 cut(s)	305, 306, 364, 525, 594, 1512
BmrI	ACTGGG	2 cut(s)	841, 1662
BmsI	GCATC	6 cut(s)	683, 880, 1100, 1522, 1544, 1843
BmuI	ACTGGG	2 cut(s)	841, 1662
BpiI	GAAGAC	3 cut(s)	87, 1516, 1993
BpuMI	CCSGG	4 cut(s)	305, 306, 364, 525
BsaAI	YACGTR	3 cut(s)	331, 514, 1048
BsaI	GGTCTC	2 cut(s)	76, 149
BsaJI	CCNNGG	5 cut(s)	124, 304, 592, 895, 1499
BsaWI	WCCGGW	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	5 cut(s)	67, 237, 363, 627, 1905
Bse118I	RCCGGY	2 cut(s)	952, 1732
Bse1I	ACTGG	8 cut(s)	98, 447, 722, 836, 1163, 1610, 1668, 1700
Bse3DI	GCAATG	1 cut(s)	1731
BseAI	TCCGGA	1 cut(s)	111
BseBI	CCWGG	2 cut(s)	594, 1512
BseDI	CCNNGG	5 cut(s)	124, 304, 592, 895, 1499
BseGI	GGATG	4 cut(s)	120, 674, 1108, 1939
BseLI	CCNNNNNNNGG	5 cut(s)	67, 237, 363, 627, 1905
BseMI	GCAATG	1 cut(s)	1731
BseMII	CTCAG	1 cut(s)	1257
BseNI	ACTGG	8 cut(s)	98, 447, 722, 836, 1163, 1610, 1668, 1700
BseRI	GAGGAG	1 cut(s)	137
BseXI	GCAGC	2 cut(s)	1708, 1831
Bsh1236I	CGCG	1 cut(s)	1521
Bsh1285I	CGRYCG	1 cut(s)	279
BshFI	GGCC	7 cut(s)	446, 541, 1025, 1052, 1307, 1350, 1578
BsiEI	CGRYCG	1 cut(s)	279
BsiHKAI	GWGCWC	2 cut(s)	330, 1881
BsiHKCI	CYCGRG	1 cut(s)	304
BsiSI	CCGG	8 cut(s)	112, 305, 357, 363, 524, 678, 953, 1733
BslFI	GGGAC	2 cut(s)	575, 1947
BslI	CCNNNNNNNGG	5 cut(s)	67, 237, 363, 627, 1905
BsmAI	GTCTC	3 cut(s)	76, 149, 714
BsmFI	GGGAC	2 cut(s)	575, 1947
BsnI	GGCC	7 cut(s)	446, 541, 1025, 1052, 1307, 1350, 1578
Bso31I	GGTCTC	2 cut(s)	76, 149
BsoBI	CYCGRG	1 cut(s)	304
Bsp1286I	GDGCHC	3 cut(s)	189, 330, 1881
Bsp13I	TCCGGA	1 cut(s)	111
Bsp19I	CCATGG	1 cut(s)	895
BspACI	CCGC	8 cut(s)	61, 178, 375, 1022, 1367, 1567, 1874, 1931
BspANI	GGCC	7 cut(s)	446, 541, 1025, 1052, 1307, 1350, 1578
BspCNI	CTCAG	1 cut(s)	1258
BspEI	TCCGGA	1 cut(s)	111
BspFNI	CGCG	1 cut(s)	1521
BspHI	TCATGA	1 cut(s)	1218
BspLI	GGNNCC	6 cut(s)	122, 131, 309, 361, 522, 1306
BspPI	GGATC	7 cut(s)	124, 137, 354, 367, 515, 528, 1270
BspQI	GCTCTTC	1 cut(s)	1904
BspTI	CTTAAG	1 cut(s)	982
BspTNI	GGTCTC	2 cut(s)	76, 149
BsrDI	GCAATG	1 cut(s)	1731
BsrFI	RCCGGY	2 cut(s)	952, 1732
BsrI	ACTGG	8 cut(s)	98, 447, 722, 836, 1163, 1610, 1668, 1700
BssAI	RCCGGY	2 cut(s)	952, 1732
BssECI	CCNNGG	5 cut(s)	124, 304, 592, 895, 1499
BssT1I	CCWWGG	3 cut(s)	124, 895, 1499
Bst2UI	CCWGG	2 cut(s)	594, 1512
Bst4CI	ACNGT	7 cut(s)	70, 211, 240, 661, 775, 1456, 1946
Bst6I	CTCTTC	4 cut(s)	48, 880, 1061, 1904
BstAFI	CTTAAG	1 cut(s)	982
BstAPI	GCANNNNNTGC	1 cut(s)	1721
BstBAI	YACGTR	3 cut(s)	331, 514, 1048
BstC8I	GCNNGC	3 cut(s)	683, 954, 1867
BstDEI	CTNAG	2 cut(s)	1266, 1849
BstDSI	CCRYGG	1 cut(s)	895
BstF5I	GGATG	4 cut(s)	120, 674, 1108, 1939
BstFNI	CGCG	1 cut(s)	1521
BstMAI	GTCTC	3 cut(s)	76, 149, 714
BstMCI	CGRYCG	1 cut(s)	279
BstMWI	GCNNNNNNNGC	4 cut(s)	1721, 1853, 1862, 1871
BstNI	CCWGG	2 cut(s)	594, 1512
BstNSI	RCATGY	2 cut(s)	685, 952
BstSCI	CCNGG	6 cut(s)	303, 304, 362, 523, 592, 1510
BstUI	CGCG	1 cut(s)	1521
BstV1I	GCAGC	2 cut(s)	1708, 1831
BstV2I	GAAGAC	3 cut(s)	87, 1516, 1993
BstX2I	RGATCY	4 cut(s)	129, 359, 520, 1262
BstYI	RGATCY	4 cut(s)	129, 359, 520, 1262
BsuRI	GGCC	7 cut(s)	446, 541, 1025, 1052, 1307, 1350, 1578
BtgI	CCRYGG	1 cut(s)	895
BtrI	CACGTC	2 cut(s)	40, 974
BtsCI	GGATG	4 cut(s)	120, 674, 1108, 1939
BtsI	GCAGTG	1 cut(s)	224
BtsIMutI	CAGTG	5 cut(s)	224, 666, 771, 1707, 1942
Cac8I	GCNNGC	3 cut(s)	683, 954, 1867
CciI	TCATGA	1 cut(s)	1218
Cfr10I	RCCGGY	2 cut(s)	952, 1732
Cfr9I	CCCGGG	1 cut(s)	304
CseI	GACGC	1 cut(s)	1510
Csp6I	GTAC	6 cut(s)	212, 254, 511, 736, 1118, 1825
CviQI	GTAC	6 cut(s)	212, 254, 511, 736, 1118, 1825
DdeI	CTNAG	2 cut(s)	1266, 1849
DriI	GACNNNNNGTC	2 cut(s)	10, 40
EaeI	YGGCCR	3 cut(s)	444, 1023, 1348
Eam1104I	CTCTTC	4 cut(s)	48, 880, 1061, 1904
Eam1105I	GACNNNNNGTC	2 cut(s)	10, 40
EarI	CTCTTC	4 cut(s)	48, 880, 1061, 1904
EciI	GGCGGA	2 cut(s)	390, 1356
Eco130I	CCWWGG	3 cut(s)	124, 895, 1499
Eco24I	GRGCYC	1 cut(s)	189
Eco31I	GGTCTC	2 cut(s)	76, 149
Eco32I	GATATC	2 cut(s)	339, 435
Eco47I	GGWCC	6 cut(s)	58, 105, 120, 308, 1559, 1631
Eco57I	CTGAAG	1 cut(s)	900
Eco72I	CACGTG	2 cut(s)	331, 1048
Eco88I	CYCGRG	1 cut(s)	304
EcoRI	GAATTC	1 cut(s)	498
EcoRII	CCWGG	2 cut(s)	592, 1510
EcoRV	GATATC	2 cut(s)	339, 435
EcoT14I	CCWWGG	3 cut(s)	124, 895, 1499
EcoT22I	ATGCAT	2 cut(s)	1214, 1537
EcoT38I	GRGCYC	1 cut(s)	189
ErhI	CCWWGG	3 cut(s)	124, 895, 1499
FaqI	GGGAC	2 cut(s)	575, 1947
FauNDI	CATATG	2 cut(s)	1006, 1466
FbaI	TGATCA	2 cut(s)	192, 204
FblI	GTMKAC	1 cut(s)	1113
Fnu4HI	GCNGC	3 cut(s)	1023, 1722, 1845
FokI	GGATG	4 cut(s)	127, 661, 1115, 1946
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	3 cut(s)	1023, 1722, 1845
FspBI	CTAG	3 cut(s)	125, 249, 546
GluI	GCNGC	3 cut(s)	1023, 1722, 1845
HaeIII	GGCC	7 cut(s)	446, 541, 1025, 1052, 1307, 1350, 1578
HapII	CCGG	8 cut(s)	112, 305, 357, 363, 524, 678, 953, 1733
HgaI	GACGC	1 cut(s)	1510
HincII	GTYRAC	1 cut(s)	562
HindII	GTYRAC	1 cut(s)	562
HindIII	AAGCTT	1 cut(s)	1343
HinfI	GANTC	7 cut(s)	11, 837, 1194, 1231, 1312, 1363, 1977
HpaII	CCGG	8 cut(s)	112, 305, 357, 363, 524, 678, 953, 1733
HphI	GGTGA	5 cut(s)	36, 190, 199, 1526, 1949
Hpy166II	GTNNAC	9 cut(s)	15, 120, 562, 689, 979, 1114, 1120, 1747, 1940
Hpy188I	TCNGA	5 cut(s)	236, 371, 506, 1002, 1267
Hpy188III	TCNNGA	5 cut(s)	73, 112, 713, 1219, 1472
Hpy8I	GTNNAC	9 cut(s)	15, 120, 562, 689, 979, 1114, 1120, 1747, 1940
Hpy99I	CGWCG	2 cut(s)	38, 41
HpyAV	CCTTC	8 cut(s)	104, 118, 163, 316, 749, 1059, 1093, 1706
HpyCH4III	ACNGT	7 cut(s)	70, 211, 240, 661, 775, 1456, 1946
HpyCH4IV	ACGT	6 cut(s)	39, 330, 513, 973, 1047, 1116
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1721, 1853, 1862, 1871
HpyF3I	CTNAG	2 cut(s)	1266, 1849
HpySE526I	ACGT	6 cut(s)	39, 330, 513, 973, 1047, 1116
Kpn2I	TCCGGA	1 cut(s)	111
KroI	GCCGGC	1 cut(s)	952
KroNI	GCCGGC	1 cut(s)	954
Ksp22I	TGATCA	2 cut(s)	192, 204
LguI	GCTCTTC	1 cut(s)	1904
LmnI	GCTCC	1 cut(s)	325
Lsp1109I	GCAGC	2 cut(s)	1708, 1831
LweI	GCATC	6 cut(s)	683, 880, 1100, 1522, 1544, 1843
MaeI	CTAG	3 cut(s)	125, 249, 546
MaeII	ACGT	6 cut(s)	39, 330, 513, 973, 1047, 1116
MaeIII	GTNAC	2 cut(s)	42, 655
MfeI	CAATTG	2 cut(s)	822, 1753
MflI	RGATCY	4 cut(s)	129, 359, 520, 1262
MhlI	GDGCHC	3 cut(s)	189, 330, 1881
MlsI	TGGCCA	2 cut(s)	446, 1350
MluNI	TGGCCA	2 cut(s)	446, 1350
MlyI	GAGTC	3 cut(s)	20, 846, 1321
MmeI	TCCRAC	1 cut(s)	617
Mox20I	TGGCCA	2 cut(s)	446, 1350
Mph1103I	ATGCAT	2 cut(s)	1214, 1537
MroI	TCCGGA	1 cut(s)	111
MroNI	GCCGGC	1 cut(s)	952
MroXI	GAANNNNTTC	1 cut(s)	1083
MscI	TGGCCA	2 cut(s)	446, 1350
MseI	TTAA	7 cut(s)	65, 315, 411, 983, 1130, 1257, 1895
MslI	CAYNNNNRTG	5 cut(s)	200, 809, 1046, 1217, 1874
Msp20I	TGGCCA	2 cut(s)	446, 1350
MspA1I	CMGCKG	1 cut(s)	1721
MspCI	CTTAAG	1 cut(s)	982
MspI	CCGG	8 cut(s)	112, 305, 357, 363, 524, 678, 953, 1733
MspR9I	CCNGG	6 cut(s)	305, 306, 364, 525, 594, 1512
MunI	CAATTG	2 cut(s)	822, 1753
MvaI	CCWGG	2 cut(s)	594, 1512
MvnI	CGCG	1 cut(s)	1521
MwoI	GCNNNNNNNGC	4 cut(s)	1721, 1853, 1862, 1871
NaeI	GCCGGC	1 cut(s)	954
NciI	CCSGG	4 cut(s)	305, 306, 364, 525
NcoI	CCATGG	1 cut(s)	895
NdeI	CATATG	2 cut(s)	1006, 1466
NgoMIV	GCCGGC	1 cut(s)	952
NlaIV	GGNNCC	6 cut(s)	122, 131, 309, 361, 522, 1306
NmuCI	GTSAC	1 cut(s)	42
NsiI	ATGCAT	2 cut(s)	1214, 1537
NspI	RCATGY	2 cut(s)	685, 952
OliI	CACNNNNGTG	1 cut(s)	1046
PaeI	GCATGC	1 cut(s)	685
PagI	TCATGA	1 cut(s)	1218
PciSI	GCTCTTC	1 cut(s)	1904
PcsI	WCGNNNNNNNCGW	2 cut(s)	30, 281
PdiI	GCCGGC	1 cut(s)	954
PdmI	GAANNNNTTC	1 cut(s)	1083
PfeI	GAWTC	4 cut(s)	1194, 1231, 1363, 1977
PflMI	CCANNNNNTGG	1 cut(s)	627
PfoI	TCCNGGA	1 cut(s)	523
PkrI	GCNGC	3 cut(s)	1024, 1723, 1846
Ple19I	CGATCG	1 cut(s)	279
PleI	GAGTC	3 cut(s)	19, 845, 1320
PmaCI	CACGTG	2 cut(s)	331, 1048
PmlI	CACGTG	2 cut(s)	331, 1048
PpsI	GAGTC	3 cut(s)	19, 845, 1320
Ppu21I	YACGTR	3 cut(s)	331, 514, 1048
PshBI	ATTAAT	1 cut(s)	1130
PsiI	TTATAA	1 cut(s)	1674
Psp6I	CCWGG	2 cut(s)	592, 1510
PspCI	CACGTG	2 cut(s)	331, 1048
PspGI	CCWGG	2 cut(s)	592, 1510
PspN4I	GGNNCC	6 cut(s)	122, 131, 309, 361, 522, 1306
PsuI	RGATCY	4 cut(s)	129, 359, 520, 1262
PvuI	CGATCG	1 cut(s)	279
PvuII	CAGCTG	1 cut(s)	1721
RsaI	GTAC	6 cut(s)	213, 255, 512, 737, 1119, 1826
RsaNI	GTAC	6 cut(s)	212, 254, 511, 736, 1118, 1825
RseI	CAYNNNNRTG	5 cut(s)	200, 809, 1046, 1217, 1874
SapI	GCTCTTC	1 cut(s)	1904
SaqAI	TTAA	7 cut(s)	65, 315, 411, 983, 1130, 1257, 1895
SatI	GCNGC	3 cut(s)	1023, 1722, 1845
SchI	GAGTC	3 cut(s)	20, 846, 1321
ScrFI	CCNGG	6 cut(s)	305, 306, 364, 525, 594, 1512
SduI	GDGCHC	3 cut(s)	189, 330, 1881
SfaNI	GCATC	6 cut(s)	683, 880, 1100, 1522, 1544, 1843
SinI	GGWCC	6 cut(s)	58, 105, 120, 308, 1559, 1631
SmaI	CCCGGG	1 cut(s)	306
SmiMI	CAYNNNNRTG	5 cut(s)	200, 809, 1046, 1217, 1874
SmlI	CTYRAG	1 cut(s)	982
SmoI	CTYRAG	1 cut(s)	982
SphI	GCATGC	1 cut(s)	685
SsiI	CCGC	8 cut(s)	61, 178, 375, 1022, 1367, 1567, 1874, 1931
SspMI	CTAG	3 cut(s)	125, 249, 546
StyD4I	CCNGG	6 cut(s)	303, 304, 362, 523, 592, 1510
StyI	CCWWGG	3 cut(s)	124, 895, 1499
TaaI	ACNGT	7 cut(s)	70, 211, 240, 661, 775, 1456, 1946
TaiI	ACGT	6 cut(s)	42, 333, 516, 976, 1050, 1119
TaqII	GACCGA	2 cut(s)	1299, 1547
TauI	GCSGC	1 cut(s)	1025
TfiI	GAWTC	4 cut(s)	1194, 1231, 1363, 1977
Tru1I	TTAA	7 cut(s)	65, 315, 411, 983, 1130, 1257, 1895
Tru9I	TTAA	7 cut(s)	65, 315, 411, 983, 1130, 1257, 1895
TscAI	CASTG	5 cut(s)	231, 666, 778, 1707, 1949
TseFI	GTSAC	1 cut(s)	42
TseI	GCWGC	2 cut(s)	1721, 1844
Tsp45I	GTSAC	1 cut(s)	42
TspGWI	ACGGA	1 cut(s)	300
TspMI	CCCGGG	1 cut(s)	304
TspRI	CASTG	5 cut(s)	231, 666, 778, 1707, 1949
Van91I	CCANNNNNTGG	1 cut(s)	627
Vha464I	CTTAAG	1 cut(s)	982
VpaK11BI	GGWCC	6 cut(s)	58, 105, 120, 308, 1559, 1631
VspI	ATTAAT	1 cut(s)	1130
XapI	RAATTY	2 cut(s)	498, 935
XceI	RCATGY	2 cut(s)	685, 952
XcmI	CCANNNNNNNNNTGG	4 cut(s)	25, 475, 828, 1641
XmaI	CCCGGG	1 cut(s)	304
XmaJI	CCTAGG	1 cut(s)	124
XmiI	GTMKAC	1 cut(s)	1113
XmnI	GAANNNNTTC	1 cut(s)	1083
XspI	CTAG	3 cut(s)	125, 249, 546
Zsp2I	ATGCAT	2 cut(s)	1214, 1537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.