Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003716

Physical Location & Seq

Genomic Coordinates Forward (+)

60114911 .. 60123665

Gene Structure 8755 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG425800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2229 bp

ATGGCTACCATACCTCTGGAAACCGAGCTTGTCGAGGCCAAACACGGTGGCAAAGAAGTTATCGACATTGACGATGAAGACGATGAGTTGTCACCGATCGAGGAGGTTCGTCTAACAGTGTCAAACGAAGACGACCCGACGCTCCCAGTATGGACATTCCGCATGTGGTCCATAGGCCTCTTCTCGTGCGCCCTCCTCTCCTTCCTCAACACCTTCTTCTCCTACCGCACCGAGCCCCTCGTCATCTCCGTGATCTCCGTCCAGGTGGCGAGTCTCCCCCTCGGAAAGTTCATGGCGAGGACCCTGCCCACGAGGAAGTTCCGAATTGGCTCGAAGGAGTTTTCACTTAATCCTGGTGAGTTCAACATCAAGGAGCACGTGTTGATATCGATTTTTGCAAATGCCGGAGCAGGGTTTGGGAGCGGTCCGGCTTATGCAGTTGGGATTGTGACTATCGTAAAGGCGTTTTATGTGAGGAAGATATCTTTCTTGGCGAGTTGGATACTTGTTATTACCACGCAGGTTTTGGGGTATGGATGGGCGGGTATTCTCCGGAAGTATGTGGTGGATCCGGCTACAATGTGGTGGCCTAGTAGTCTGGTTCAGGTCTCTTTGTTTAGGGCTCTACACGAGAAAGACAACAACCGCATGTCCAGAGGAAAATTCTTTCTGATTGCGCTGGTATGCAGCTTCTCTTGGTATGTTGTCCCAGACTACCTTTTCGCAACTATATCAACCATTTCATGGGTCTGCTGGCTTTTCCCCAAGTCAATAACAGCACATCAAATCGGGTCGGGCATGCGTGGACTTGGTATTGGGTCACTTACATTGGATTGGTCTGTCATAGCCTCGTACTTAGGCAGCCCACTGATCAGCCCATTTTTTGCCATTGTCAATATCACTGTTGGCTATATTCTCACCATGTATGTGGTATTACCGACTGCCTATTGGGGATTCAACTTATACAATGCCAAGAACTTCGCAATCTTCTCTAAAAACTTGTTTGATGACCATGGTGAAATATATAATGTCACGGCCATTGTCAATGACAAGTTCGAAATTGACATGCCTGCCTACAAAAAACAAGGACATATAAACCTCAGTGTGTTCTTTTCTCTGACCTACGGGATTGGCTTCGCTGGTGTTATATCGACCATCACACATGTGGCTCTATTCAATGGAAGGGAGATGTATGAGAAATACAAAGCTGCACATACTGGAAAGGTGGACGTCCACACCAGATTGATGAGAAATTACAGAGACATACCTACCTGGTGGTTTCATATTCTGCTTTTGTTGTCGCTTGCACTCTCTCTGGCGTTATGCATTTTCATGAAAGATGAGGTACAACTGCCTTGGTGGGGACTCCTTTTTGCAGCTGCAATTGCATCGGTTTTCACTCTTCCGATTAGCGTTATAACGGCGACAACGAATCAGTCACCAGGACTAAACGTAATCACAGAGTATATAATGGGTTTGATATTACCTGGAGAACCAATAGCCAATGTATGCTTCAAAACCTATGGGTATATAAGCATGGCGCAGGCAATTTCCTTTCTGAGTGATTTCAAGTTAGGTCACTACATGAAGATCCCACCCATATCGATGTTCATAGTTCAGTGCATAGGAACTGTGATAGCCGGAACAGTCAATATTGGGGTGGCATGGTGGCTGCTAACTACTGTGGAAAACATATGTCAAGAAAGTTTACTCCCTCCTGATAGTCCTTGGACTTGTGTCAATGATGCTGTGTTTTTTGATGCCTCTGTAATTTGGGGTCTGGTCGGGCCAAAACGAATATTTGGCTCCCGTGGATACTACTCAGCACTTAACTGGTTCTTCCTTTTCGGTGCAATTGGACCTCTCATAGTATGGTTGTTGCATAAAGCTTTTCCAAGTCAAAAATGGATCGCGCTGATCAACCTTCCCGTGCTTTTGGGAGCAACGGCTGTAATGCCACCGGCTTCAACTGTGAACTTCAATTGCTGGATTATTGTTGGAGTTGTTTTCAATTACTATGTCTTCAGATACAGAAAGACATGGTGGCAAAGGTACAATTATGTTCTTTCAGCCGCCTTAGATGCTGGAGTAGCTTTCATGGCGGTGCTTGTATATTTATCAATGAATGGTAAGGGCATTTCTTGGTGGGGAACAGATGGGGAACACTGTCAGCTGGCTACCTGTCCAACAGCTGAAGGCTTGGATCTTGGTCATGCTTGTGTATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

742

Amino Acids

82.91

Weight (kDa)

7.19

Isoelectric Point (pI)

26.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	50 - 707	5.7e-180	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09930
fragaria_vesca	FvH4_5g34010 FvH4_5g34011
malus_domestica	MD08G1206700.v1.1 MD15G1390200.v1.1 MD15G1390400.v1.1
prunus_persica	Prupe.1G539200_v2.0.a1 Prupe.1G539300_v2.0.a1
pyrus_communis	pycom15g34950 pycom15g34960
rosa_chinensis	RchiOBHm_Chr7g0233451 RchiOBHm_Chr7g0233471
rosa_laevigata	RLG00000001268 RLG00000001269
rosa_multiflora	Rmu_sc0000029.1_g000038 Rmu_sc0000029.1_g000051
rosa_roxburghii	Rroxscaffold_3G00227270 Rroxscaffold_3G00227290
rosa_rugosa	Rorug07G0280800 Rorug07G0280800
rosa_samantha	Rh7AG436600 Rh7AG436700 Rh7BG409700 Rh7BG409800 Rh7CG456500 Rh7CG456700 Rh7DG425800 Rh7DG425900
rosa_wichuraiana	Rw0G008530 Rw0G022500 Rw7G036000 Rw7G036010 Rw7G036030 Rw7G036040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1418
AatII	GACGTC	1 cut(s)	1233
Acc36I	ACCTGC	1 cut(s)	511
AccB7I	CCANNNNNTGG	1 cut(s)	744
AccBSI	CCGCTC	1 cut(s)	423
AccII	CGCG	1 cut(s)	1913
AccIII	TCCGGA	1 cut(s)	552
AciI	CCGC	7 cut(s)	160, 226, 423, 542, 646, 2073, 2102
AclWI	GGATC	5 cut(s)	563, 576, 1585, 1916, 2211
AcoI	YGGCCR	1 cut(s)	1035
AcsI	RAATTY	1 cut(s)	662
AcuI	CTGAAG	2 cut(s)	2008, 2214
AcvI	CACGTG	1 cut(s)	379
AcyI	GRCGYC	1 cut(s)	1230
AfaI	GTAC	3 cut(s)	854, 1347, 2054
AfiI	CCNNNNNNNGG	3 cut(s)	411, 744, 1361
AflIII	ACRYGT	2 cut(s)	378, 1162
AgsI	TTSAA	8 cut(s)	364, 958, 1177, 1516, 1570, 1968, 1981, 2011
AjnI	CCWGG	5 cut(s)	261, 352, 1271, 1441, 1486
AjuI	GAANNNNNNNTTGG	2 cut(s)	1496, 1528
AleI	CACNNNNGTG	1 cut(s)	1163
AluBI	AGCT	8 cut(s)	28, 690, 1208, 1379, 1889, 2093, 2173, 2192
AluI	AGCT	8 cut(s)	28, 690, 1208, 1379, 1889, 2093, 2173, 2192
Alw21I	GWGCWC	1 cut(s)	378
Alw26I	GTCTC	3 cut(s)	278, 613, 1254
AlwI	GGATC	5 cut(s)	563, 576, 1585, 1916, 2211
Aor13HI	TCCGGA	1 cut(s)	552
AoxI	GGCC	5 cut(s)	36, 175, 587, 1035, 1787
ApeKI	GCWGC	6 cut(s)	687, 861, 1208, 1376, 1379, 1672
ApoI	RAATTY	1 cut(s)	662
ArsI	GACNNNNNNTTYG	2 cut(s)	704, 736
AspLEI	GCGC	4 cut(s)	191, 679, 1543, 1915
AspS9I	GGNCC	5 cut(s)	168, 300, 425, 1787, 1859
AsuHPI	GGTGA	5 cut(s)	84, 368, 910, 1028, 1431
AsuII	TTCGAA	1 cut(s)	1056
AvaII	GGWCC	4 cut(s)	168, 300, 425, 1859
BamHI	GGATCC	1 cut(s)	568
BanII	GRGCYC	2 cut(s)	237, 625
BauI	CACGAG	3 cut(s)	184, 310, 629
BbrPI	CACGTG	1 cut(s)	379
BbsI	GAAGAC	3 cut(s)	84, 135, 2014
Bbv12I	GWGCWC	1 cut(s)	378
BbvI	GCAGC	6 cut(s)	699, 873, 1195, 1366, 1388, 1659
BccI	CCATC	3 cut(s)	531, 1163, 2150
BceAI	ACGGC	3 cut(s)	1050, 1437, 1962
BcgI	CGANNNNNNTGC	4 cut(s)	286, 320, 1371, 1405
BciT130I	CCWGG	5 cut(s)	263, 354, 1273, 1443, 1488
BciVI	GTATCC	2 cut(s)	495, 1808
BclI	TGATCA	2 cut(s)	870, 1917
BcoDI	GTCTC	3 cut(s)	278, 613, 1254
BfaI	CTAG	1 cut(s)	591
BfuAI	ACCTGC	1 cut(s)	511
BfuI	GTATCC	2 cut(s)	495, 1808
BisI	GCNGC	7 cut(s)	688, 862, 1209, 1377, 1380, 1673, 2073
BlsI	GCNGC	7 cut(s)	689, 863, 1210, 1378, 1381, 1674, 2074
Bme1390I	CCNGG	5 cut(s)	263, 354, 1273, 1443, 1488
Bme18I	GGWCC	4 cut(s)	168, 300, 425, 1859
BmgT120I	GGNCC	5 cut(s)	168, 300, 425, 1787, 1859
BmiI	GGNNCC	3 cut(s)	302, 570, 1807
BmrFI	CCNGG	5 cut(s)	263, 354, 1273, 1443, 1488
BmrI	ACTGGG	1 cut(s)	140
BmsI	GCATC	4 cut(s)	1397, 1735, 1750, 2071
BmuI	ACTGGG	1 cut(s)	140
BoxI	GACNNNNGTC	1 cut(s)	1736
BpiI	GAAGAC	3 cut(s)	84, 135, 2014
BpmI	CTGGAG	2 cut(s)	1509, 2106
Bpu14I	TTCGAA	1 cut(s)	1056
Bsa29I	ATCGAT	2 cut(s)	389, 1604
BsaAI	YACGTR	1 cut(s)	379
BsaHI	GRCGYC	1 cut(s)	1230
BsaI	GGTCTC	1 cut(s)	613
BsaJI	CCNNGG	5 cut(s)	280, 1012, 1355, 1727, 1810
BsaWI	WCCGGW	1 cut(s)	552
BsaXI	ACNNNNNCTCC	2 cut(s)	365, 395
Bsc4I	CCNNNNNNNGG	3 cut(s)	411, 744, 1361
Bse118I	RCCGGY	1 cut(s)	1960
Bse1I	ACTGG	3 cut(s)	146, 1222, 1838
BseAI	TCCGGA	1 cut(s)	552
BseBI	CCWGG	5 cut(s)	263, 354, 1273, 1443, 1488
BseCI	ATCGAT	2 cut(s)	389, 1604
BseDI	CCNNGG	5 cut(s)	280, 1012, 1355, 1727, 1810
BseGI	GGATG	1 cut(s)	542
BseLI	CCNNNNNNNGG	3 cut(s)	411, 744, 1361
BseMII	CTCAG	3 cut(s)	1114, 1550, 1836
BseNI	ACTGG	3 cut(s)	146, 1222, 1838
BseRI	GAGGAG	2 cut(s)	116, 185
BseXI	GCAGC	6 cut(s)	699, 873, 1195, 1366, 1388, 1659
BsgI	GTGCAG	1 cut(s)	1194
Bsh1236I	CGCG	1 cut(s)	1913
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	5 cut(s)	38, 177, 589, 1037, 1789
BshVI	ATCGAT	2 cut(s)	389, 1604
BsiEI	CGRYCG	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	378
BsiSI	CCGG	6 cut(s)	405, 428, 553, 572, 1641, 1961
BslFI	GGGAC	2 cut(s)	692, 1377
BslI	CCNNNNNNNGG	3 cut(s)	411, 744, 1361
BsmAI	GTCTC	3 cut(s)	278, 613, 1254
BsmFI	GGGAC	2 cut(s)	692, 1377
BsnI	GGCC	5 cut(s)	38, 177, 589, 1037, 1789
Bso31I	GGTCTC	1 cut(s)	613
Bsp119I	TTCGAA	1 cut(s)	1056
Bsp1286I	GDGCHC	3 cut(s)	237, 378, 625
Bsp13I	TCCGGA	1 cut(s)	552
Bsp143I	GATC	8 cut(s)	96, 252, 568, 870, 1590, 1908, 1917, 2203
Bsp19I	CCATGG	1 cut(s)	1012
BspACI	CCGC	7 cut(s)	160, 226, 423, 542, 646, 2073, 2102
BspANI	GGCC	5 cut(s)	38, 177, 589, 1037, 1789
BspCNI	CTCAG	3 cut(s)	1113, 1551, 1835
BspDI	ATCGAT	2 cut(s)	389, 1604
BspEI	TCCGGA	1 cut(s)	552
BspFNI	CGCG	1 cut(s)	1913
BspHI	TCATGA	1 cut(s)	1332
BspLI	GGNNCC	3 cut(s)	302, 570, 1807
BspMI	ACCTGC	1 cut(s)	511
BspPI	GGATC	5 cut(s)	563, 576, 1585, 1916, 2211
BspT104I	TTCGAA	1 cut(s)	1056
BspTNI	GGTCTC	1 cut(s)	613
BsrBI	CCGCTC	1 cut(s)	423
BsrFI	RCCGGY	1 cut(s)	1960
BsrI	ACTGG	3 cut(s)	146, 1222, 1838
BssAI	RCCGGY	1 cut(s)	1960
BssECI	CCNNGG	5 cut(s)	280, 1012, 1355, 1727, 1810
BssMI	GATC	8 cut(s)	96, 252, 568, 870, 1590, 1908, 1917, 2203
BssNI	GRCGYC	1 cut(s)	1230
BssSI	CACGAG	3 cut(s)	184, 310, 629
BssT1I	CCWWGG	3 cut(s)	1012, 1355, 1727
Bst2BI	CACGAG	3 cut(s)	184, 310, 629
Bst2UI	CCWGG	5 cut(s)	263, 354, 1273, 1443, 1488
Bst4CI	ACNGT	8 cut(s)	47, 118, 904, 1633, 1648, 1684, 1972, 2168
Bst6I	CTCTTC	2 cut(s)	185, 1407
BstACI	GRCGYC	1 cut(s)	1230
BstBAI	YACGTR	1 cut(s)	379
BstBI	TTCGAA	1 cut(s)	1056
BstC8I	GCNNGC	6 cut(s)	755, 800, 1071, 1305, 1545, 2175
BstDEI	CTNAG	5 cut(s)	856, 1100, 1559, 1822, 2077
BstDSI	CCRYGG	2 cut(s)	1012, 1810
BstF5I	GGATG	1 cut(s)	542
BstFNI	CGCG	1 cut(s)	1913
BstHHI	GCGC	4 cut(s)	191, 679, 1543, 1915
BstKTI	GATC	8 cut(s)	99, 255, 571, 873, 1593, 1911, 1920, 2206
BstMAI	GTCTC	3 cut(s)	278, 613, 1254
BstMBI	GATC	8 cut(s)	96, 252, 568, 870, 1590, 1908, 1917, 2203
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	4 cut(s)	1385, 2081, 2090, 2099
BstNI	CCWGG	5 cut(s)	263, 354, 1273, 1443, 1488
BstNSI	RCATGY	5 cut(s)	166, 652, 802, 1069, 1166
BstPAI	GACNNNNGTC	1 cut(s)	1736
BstSCI	CCNGG	5 cut(s)	261, 352, 1271, 1441, 1486
BstUI	CGCG	1 cut(s)	1913
BstV1I	GCAGC	6 cut(s)	699, 873, 1195, 1366, 1388, 1659
BstV2I	GAAGAC	3 cut(s)	84, 135, 2014
BstX2I	RGATCY	3 cut(s)	568, 1590, 2203
BstXI	CCANNNNNNTGG	2 cut(s)	16, 928
BstYI	RGATCY	3 cut(s)	568, 1590, 2203
Bsu15I	ATCGAT	2 cut(s)	389, 1604
BsuI	GTATCC	2 cut(s)	495, 1808
BsuRI	GGCC	5 cut(s)	38, 177, 589, 1037, 1789
BsuTUI	ATCGAT	2 cut(s)	389, 1604
BtgI	CCRYGG	2 cut(s)	1012, 1810
BtsCI	GGATG	1 cut(s)	542
BtsIMutI	CAGTG	6 cut(s)	123, 866, 900, 1108, 1625, 2164
BveI	ACCTGC	1 cut(s)	511
Cac8I	GCNNGC	6 cut(s)	755, 800, 1071, 1305, 1545, 2175
CciI	TCATGA	1 cut(s)	1332
CfoI	GCGC	4 cut(s)	191, 679, 1543, 1915
Cfr10I	RCCGGY	1 cut(s)	1960
Cfr13I	GGNCC	5 cut(s)	168, 300, 425, 1787, 1859
ClaI	ATCGAT	2 cut(s)	389, 1604
CpoI	CGGWCCG	1 cut(s)	425
CseI	GACGC	1 cut(s)	148
CsiI	ACCWGGT	1 cut(s)	1271
Csp6I	GTAC	3 cut(s)	853, 1346, 2053
CspCI	CAANNNNNGTGG	2 cut(s)	28, 63
CspI	CGGWCCG	1 cut(s)	425
CviQI	GTAC	3 cut(s)	853, 1346, 2053
DdeI	CTNAG	5 cut(s)	856, 1100, 1559, 1822, 2077
DpnI	GATC	8 cut(s)	98, 254, 570, 872, 1592, 1910, 1919, 2205
DpnII	GATC	8 cut(s)	96, 252, 568, 870, 1590, 1908, 1917, 2203
EaeI	YGGCCR	1 cut(s)	1035
Eam1104I	CTCTTC	2 cut(s)	185, 1407
EarI	CTCTTC	2 cut(s)	185, 1407
Eco130I	CCWWGG	3 cut(s)	1012, 1355, 1727
Eco147I	AGGCCT	1 cut(s)	177
Eco24I	GRGCYC	2 cut(s)	237, 625
Eco31I	GGTCTC	1 cut(s)	613
Eco32I	GATATC	2 cut(s)	387, 483
Eco47I	GGWCC	4 cut(s)	168, 300, 425, 1859
Eco57I	CTGAAG	2 cut(s)	2008, 2214
Eco72I	CACGTG	1 cut(s)	379
EcoO109I	RGGNCCY	1 cut(s)	300
EcoRII	CCWGG	5 cut(s)	261, 352, 1271, 1441, 1486
EcoRV	GATATC	2 cut(s)	387, 483
EcoT14I	CCWWGG	3 cut(s)	1012, 1355, 1727
EcoT22I	ATGCAT	1 cut(s)	1328
EcoT38I	GRGCYC	2 cut(s)	237, 625
ErhI	CCWWGG	3 cut(s)	1012, 1355, 1727
FaqI	GGGAC	2 cut(s)	692, 1377
FauI	CCCGC	1 cut(s)	535
FauNDI	CATATG	1 cut(s)	1694
FbaI	TGATCA	2 cut(s)	870, 1917
Fnu4HI	GCNGC	7 cut(s)	688, 862, 1209, 1377, 1380, 1673, 2073
FokI	GGATG	1 cut(s)	549
FriOI	GRGCYC	2 cut(s)	237, 625
Fsp4HI	GCNGC	7 cut(s)	688, 862, 1209, 1377, 1380, 1673, 2073
FspBI	CTAG	1 cut(s)	591
GlaI	GCGC	4 cut(s)	190, 678, 1542, 1914
GluI	GCNGC	7 cut(s)	688, 862, 1209, 1377, 1380, 1673, 2073
GsuI	CTGGAG	2 cut(s)	1509, 2106
HaeIII	GGCC	5 cut(s)	38, 177, 589, 1037, 1789
HapII	CCGG	6 cut(s)	405, 428, 553, 572, 1641, 1961
HgaI	GACGC	1 cut(s)	148
HhaI	GCGC	4 cut(s)	191, 679, 1543, 1915
Hin1I	GRCGYC	1 cut(s)	1230
Hin6I	GCGC	4 cut(s)	189, 677, 1541, 1913
HinP1I	GCGC	4 cut(s)	189, 677, 1541, 1913
HindIII	AAGCTT	1 cut(s)	1887
HinfI	GANTC	4 cut(s)	271, 954, 1365, 1432
HpaII	CCGG	6 cut(s)	405, 428, 553, 572, 1641, 1961
HphI	GGTGA	5 cut(s)	84, 368, 910, 1028, 1431
Hpy166II	GTNNAC	5 cut(s)	806, 1228, 1234, 1709, 1975
Hpy188I	TCNGA	7 cut(s)	284, 323, 672, 1119, 1407, 1560, 2027
Hpy188III	TCNNGA	6 cut(s)	17, 553, 654, 1333, 1700, 1718
Hpy8I	GTNNAC	5 cut(s)	806, 1228, 1234, 1709, 1975
Hpy99I	CGWCG	1 cut(s)	142
HpyAV	CCTTC	6 cut(s)	211, 223, 328, 1176, 1934, 2189
HpyCH4III	ACNGT	8 cut(s)	47, 118, 904, 1633, 1648, 1684, 1972, 2168
HpyCH4IV	ACGT	3 cut(s)	378, 1230, 1452
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1385, 2081, 2090, 2099
HpyF3I	CTNAG	5 cut(s)	856, 1100, 1559, 1822, 2077
HpySE526I	ACGT	3 cut(s)	378, 1230, 1452
Hsp92I	GRCGYC	1 cut(s)	1230
HspAI	GCGC	4 cut(s)	189, 677, 1541, 1913
Kpn2I	TCCGGA	1 cut(s)	552
Ksp22I	TGATCA	2 cut(s)	870, 1917
Kzo9I	GATC	8 cut(s)	96, 252, 568, 870, 1590, 1908, 1917, 2203
LmnI	GCTCC	6 cut(s)	147, 373, 407, 420, 1811, 1940
Lsp1109I	GCAGC	6 cut(s)	699, 873, 1195, 1366, 1388, 1659
LweI	GCATC	4 cut(s)	1397, 1735, 1750, 2071
MabI	ACCWGGT	1 cut(s)	1271
MaeI	CTAG	1 cut(s)	591
MaeII	ACGT	3 cut(s)	378, 1230, 1452
MaeIII	GTNAC	6 cut(s)	90, 448, 819, 1030, 1437, 1577
MalI	GATC	8 cut(s)	98, 254, 570, 872, 1592, 1910, 1919, 2205
MbiI	CCGCTC	1 cut(s)	423
MboI	GATC	8 cut(s)	96, 252, 568, 870, 1590, 1908, 1917, 2203
MfeI	CAATTG	3 cut(s)	1383, 1854, 1981
MflI	RGATCY	3 cut(s)	568, 1590, 2203
MhlI	GDGCHC	3 cut(s)	237, 378, 625
MlyI	GAGTC	2 cut(s)	280, 1359
MmeI	TCCRAC	3 cut(s)	479, 1978, 2210
Mph1103I	ATGCAT	1 cut(s)	1328
MroI	TCCGGA	1 cut(s)	552
MseI	TTAA	2 cut(s)	348, 1830
MslI	CAYNNNNRTG	7 cut(s)	248, 926, 1163, 1331, 1604, 2102, 2217
MspA1I	CMGCKG	3 cut(s)	1379, 2173, 2192
MspI	CCGG	6 cut(s)	405, 428, 553, 572, 1641, 1961
MspR9I	CCNGG	5 cut(s)	263, 354, 1273, 1443, 1488
MunI	CAATTG	3 cut(s)	1383, 1854, 1981
MvaI	CCWGG	5 cut(s)	263, 354, 1273, 1443, 1488
MvnI	CGCG	1 cut(s)	1913
MwoI	GCNNNNNNNGC	4 cut(s)	1385, 2081, 2090, 2099
NcoI	CCATGG	1 cut(s)	1012
NdeI	CATATG	1 cut(s)	1694
NdeII	GATC	8 cut(s)	96, 252, 568, 870, 1590, 1908, 1917, 2203
NlaIV	GGNNCC	3 cut(s)	302, 570, 1807
NmuCI	GTSAC	6 cut(s)	90, 448, 819, 1030, 1437, 1577
NsiI	ATGCAT	1 cut(s)	1328
NspI	RCATGY	5 cut(s)	166, 652, 802, 1069, 1166
NspV	TTCGAA	1 cut(s)	1056
OliI	CACNNNNGTG	1 cut(s)	1163
PaeI	GCATGC	1 cut(s)	802
PagI	TCATGA	1 cut(s)	1332
PceI	AGGCCT	1 cut(s)	177
PciI	ACATGT	1 cut(s)	1162
PcsI	WCGNNNNNNNCGW	4 cut(s)	69, 78, 246, 1427
PfeI	GAWTC	2 cut(s)	954, 1432
PflMI	CCANNNNNTGG	1 cut(s)	744
PkrI	GCNGC	7 cut(s)	689, 863, 1210, 1378, 1381, 1674, 2074
Ple19I	CGATCG	1 cut(s)	99
PleI	GAGTC	2 cut(s)	279, 1359
PmaCI	CACGTG	1 cut(s)	379
PmlI	CACGTG	1 cut(s)	379
PpsI	GAGTC	2 cut(s)	279, 1359
Ppu21I	YACGTR	1 cut(s)	379
PpuMI	RGGWCCY	1 cut(s)	300
PscI	ACATGT	1 cut(s)	1162
PshAI	GACNNNNGTC	1 cut(s)	1736
PsiI	TTATAA	1 cut(s)	1418
Psp5II	RGGWCCY	1 cut(s)	300
Psp6I	CCWGG	5 cut(s)	261, 352, 1271, 1441, 1486
PspCI	CACGTG	1 cut(s)	379
PspGI	CCWGG	5 cut(s)	261, 352, 1271, 1441, 1486
PspN4I	GGNNCC	3 cut(s)	302, 570, 1807
PspPI	GGNCC	5 cut(s)	168, 300, 425, 1787, 1859
PspPPI	RGGWCCY	1 cut(s)	300
PsuI	RGATCY	3 cut(s)	568, 1590, 2203
PvuI	CGATCG	1 cut(s)	99
PvuII	CAGCTG	3 cut(s)	1379, 2173, 2192
RsaI	GTAC	3 cut(s)	854, 1347, 2054
RsaNI	GTAC	3 cut(s)	853, 1346, 2053
RseI	CAYNNNNRTG	7 cut(s)	248, 926, 1163, 1331, 1604, 2102, 2217
Rsr2I	CGGWCCG	1 cut(s)	425
RsrII	CGGWCCG	1 cut(s)	425
SaqAI	TTAA	2 cut(s)	348, 1830
SatI	GCNGC	7 cut(s)	688, 862, 1209, 1377, 1380, 1673, 2073
Sau3AI	GATC	8 cut(s)	96, 252, 568, 870, 1590, 1908, 1917, 2203
Sau96I	GGNCC	5 cut(s)	168, 300, 425, 1787, 1859
SchI	GAGTC	2 cut(s)	280, 1359
ScrFI	CCNGG	5 cut(s)	263, 354, 1273, 1443, 1488
SduI	GDGCHC	3 cut(s)	237, 378, 625
SexAI	ACCWGGT	1 cut(s)	1271
SfaNI	GCATC	4 cut(s)	1397, 1735, 1750, 2071
SfuI	TTCGAA	1 cut(s)	1056
SinI	GGWCC	4 cut(s)	168, 300, 425, 1859
SmiMI	CAYNNNNRTG	7 cut(s)	248, 926, 1163, 1331, 1604, 2102, 2217
SphI	GCATGC	1 cut(s)	802
SseBI	AGGCCT	1 cut(s)	177
SsiI	CCGC	7 cut(s)	160, 226, 423, 542, 646, 2073, 2102
SspI	AATATT	2 cut(s)	1654, 1800
SspMI	CTAG	1 cut(s)	591
StuI	AGGCCT	1 cut(s)	177
StyD4I	CCNGG	5 cut(s)	261, 352, 1271, 1441, 1486
StyI	CCWWGG	3 cut(s)	1012, 1355, 1727
TaaI	ACNGT	8 cut(s)	47, 118, 904, 1633, 1648, 1684, 1972, 2168
TaiI	ACGT	3 cut(s)	381, 1233, 1455
TaqI	TCGA	8 cut(s)	33, 63, 99, 332, 389, 1056, 1151, 1604
TauI	GCSGC	1 cut(s)	2075
TfiI	GAWTC	2 cut(s)	954, 1432
Tru1I	TTAA	2 cut(s)	348, 1830
Tru9I	TTAA	2 cut(s)	348, 1830
TscAI	CASTG	6 cut(s)	123, 873, 907, 1108, 1625, 2171
TseFI	GTSAC	6 cut(s)	90, 448, 819, 1030, 1437, 1577
TseI	GCWGC	6 cut(s)	687, 861, 1208, 1376, 1379, 1672
Tsp45I	GTSAC	6 cut(s)	90, 448, 819, 1030, 1437, 1577
TspGWI	ACGGA	2 cut(s)	238, 247
TspRI	CASTG	6 cut(s)	123, 873, 907, 1108, 1625, 2171
Van91I	CCANNNNNTGG	1 cut(s)	744
VpaK11BI	GGWCC	4 cut(s)	168, 300, 425, 1859
XapI	RAATTY	1 cut(s)	662
XceI	RCATGY	5 cut(s)	166, 652, 802, 1069, 1166
XcmI	CCANNNNNNNNNTGG	3 cut(s)	523, 1162, 1902
XspI	CTAG	1 cut(s)	591
ZraI	GACGTC	1 cut(s)	1231
Zsp2I	ATGCAT	1 cut(s)	1328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.