Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000029.1

Orthogroup ID

OG0003716

Physical Location & Seq

Genomic Coordinates Reverse (-)

205711 .. 207395

Gene Structure 1685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000029.1_g000051.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

atggctaccatacctctggaaaccgagcttgtcgaggccaaacacggtggcaaagaagttatcgacattgacgatgaagacgatgagttgtcaccgatcgaggaggttcgtctaacagtgtcaaacgaagacgacccgacgctcccagtatggacattccgcatgtggtccataggcctcttctcgtgcgccctcctctccttcctcaacaccttcttctcctaccgcaccgagcccctcgtcatctccgtgatctccgtccaggtggcgagtctccccctcggaaagttcatggcgaggaccctgcccacgaggaagttccgaattggctcgaaggagttttcacttaatcctggtgagttcaacatcaaggagcacgtgttgatatcgatttttgcaaatgccggagcagggtttgggagcggtccggcttatgcagttgggattgtgactatcgtaaaggcgttttatgtgaggaagatatctttcttggcgagttggatacttgttattaccacgcagacaattaacgtggggttttgtggcggcaaagtgcaggttttggggtatggatgggcgggtattctccggaagtatgtggtggatccggctacaatgtggtggcctagtagtctggttcaggtctctttgtttagcttctcttggtatgttgtcccagactaccttttcgcaactatatcaaccatttcatgggtctgctggcttttccccaagtcaataacagcacatcaaatcgggtcgggcatgcgtggacttggtattgggtcaattacattggattggtctgtcatagcctcgtacttaggcagcccactgatcagcccattttttgccattgtcaatatcactgttggctatattctcaccatgtatgtggtattaccgactgcctattggggattcaacttatacaatgccaagaacttcgcaatcttctctaaaaacttgtttgatgaccatggtgaaatatataatgtcacggccattgtcaatgacaagttcgaaattgacatgcctgcctacaaaaaacaaggacatataaacctcagtgtgttcttttctctgacctacgggattggcttcgctggtgttatatcgaccatcacacatgtggctctattcaatggaaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

384

Amino Acids

42.57

Weight (kDa)

6.08

Isoelectric Point (pI)

27.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09930
fragaria_vesca	FvH4_5g34010 FvH4_5g34011
malus_domestica	MD08G1206700.v1.1 MD15G1390200.v1.1 MD15G1390400.v1.1
prunus_persica	Prupe.1G539200_v2.0.a1 Prupe.1G539300_v2.0.a1
pyrus_communis	pycom15g34950 pycom15g34960
rosa_chinensis	RchiOBHm_Chr7g0233451 RchiOBHm_Chr7g0233471
rosa_laevigata	RLG00000001268 RLG00000001269
rosa_multiflora	Rmu_sc0000029.1_g000038 Rmu_sc0000029.1_g000051
rosa_roxburghii	Rroxscaffold_3G00227270 Rroxscaffold_3G00227290
rosa_rugosa	Rorug07G0280800 Rorug07G0280800
rosa_samantha	Rh7AG436600 Rh7AG436700 Rh7BG409700 Rh7BG409800 Rh7CG456500 Rh7CG456700 Rh7DG425800 Rh7DG425900
rosa_wichuraiana	Rw0G008530 Rw0G022500 Rw7G036000 Rw7G036010 Rw7G036030 Rw7G036040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	547
AccB7I	CCANNNNNTGG	1 cut(s)	711
AccBSI	CCGCTC	1 cut(s)	423
AccIII	TCCGGA	1 cut(s)	588
AciI	CCGC	5 cut(s)	160, 226, 423, 546, 578
AclWI	GGATC	2 cut(s)	599, 612
AcoI	YGGCCR	1 cut(s)	1002
AcvI	CACGTG	1 cut(s)	379
AfaI	GTAC	1 cut(s)	821
AfiI	CCNNNNNNNGG	2 cut(s)	411, 711
AflIII	ACRYGT	2 cut(s)	378, 1129
AgsI	TTSAA	3 cut(s)	364, 925, 1144
AjnI	CCWGG	2 cut(s)	261, 352
AleI	CACNNNNGTG	1 cut(s)	1130
AluBI	AGCT	2 cut(s)	28, 657
AluI	AGCT	2 cut(s)	28, 657
Alw21I	GWGCWC	1 cut(s)	378
Alw26I	GTCTC	2 cut(s)	278, 649
AlwI	GGATC	2 cut(s)	599, 612
Aor13HI	TCCGGA	1 cut(s)	588
AoxI	GGCC	4 cut(s)	36, 175, 623, 1002
ApeKI	GCWGC	1 cut(s)	828
ArsI	GACNNNNNNTTYG	2 cut(s)	671, 703
AspLEI	GCGC	1 cut(s)	191
AspS9I	GGNCC	3 cut(s)	168, 300, 425
AsuHPI	GGTGA	4 cut(s)	84, 368, 877, 995
AsuII	TTCGAA	1 cut(s)	1023
AvaII	GGWCC	3 cut(s)	168, 300, 425
BamHI	GGATCC	1 cut(s)	604
BanII	GRGCYC	1 cut(s)	237
BauI	CACGAG	2 cut(s)	184, 310
BbrPI	CACGTG	1 cut(s)	379
BbsI	GAAGAC	2 cut(s)	84, 135
Bbv12I	GWGCWC	1 cut(s)	378
BbvI	GCAGC	1 cut(s)	840
BccI	CCATC	2 cut(s)	567, 1130
BceAI	ACGGC	1 cut(s)	1017
BcgI	CGANNNNNNTGC	2 cut(s)	286, 320
BciT130I	CCWGG	2 cut(s)	263, 354
BciVI	GTATCC	1 cut(s)	495
BclI	TGATCA	1 cut(s)	837
BcoDI	GTCTC	2 cut(s)	278, 649
BfaI	CTAG	1 cut(s)	627
BfuAI	ACCTGC	1 cut(s)	547
BfuI	GTATCC	1 cut(s)	495
BisI	GCNGC	2 cut(s)	547, 829
BlsI	GCNGC	2 cut(s)	548, 830
Bme1390I	CCNGG	2 cut(s)	263, 354
Bme18I	GGWCC	3 cut(s)	168, 300, 425
BmgT120I	GGNCC	3 cut(s)	168, 300, 425
BmiI	GGNNCC	2 cut(s)	302, 606
BmrFI	CCNGG	2 cut(s)	263, 354
BmrI	ACTGGG	1 cut(s)	140
BmuI	ACTGGG	1 cut(s)	140
BpiI	GAAGAC	2 cut(s)	84, 135
Bpu14I	TTCGAA	1 cut(s)	1023
Bsa29I	ATCGAT	1 cut(s)	389
BsaAI	YACGTR	1 cut(s)	379
BsaI	GGTCTC	1 cut(s)	649
BsaJI	CCNNGG	2 cut(s)	280, 979
BsaWI	WCCGGW	1 cut(s)	588
BsaXI	ACNNNNNCTCC	2 cut(s)	365, 395
Bsc4I	CCNNNNNNNGG	2 cut(s)	411, 711
Bse1I	ACTGG	1 cut(s)	146
BseAI	TCCGGA	1 cut(s)	588
BseBI	CCWGG	2 cut(s)	263, 354
BseCI	ATCGAT	1 cut(s)	389
BseDI	CCNNGG	2 cut(s)	280, 979
BseGI	GGATG	1 cut(s)	578
BseLI	CCNNNNNNNGG	2 cut(s)	411, 711
BseMII	CTCAG	1 cut(s)	1081
BseNI	ACTGG	1 cut(s)	146
BseRI	GAGGAG	2 cut(s)	116, 185
BseXI	GCAGC	1 cut(s)	840
BsgI	GTGCAG	1 cut(s)	575
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	4 cut(s)	38, 177, 625, 1004
BshVI	ATCGAT	1 cut(s)	389
BsiEI	CGRYCG	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	378
BsiSI	CCGG	4 cut(s)	405, 428, 589, 608
BslFI	GGGAC	1 cut(s)	659
BslI	CCNNNNNNNGG	2 cut(s)	411, 711
BsmAI	GTCTC	2 cut(s)	278, 649
BsmFI	GGGAC	1 cut(s)	659
BsnI	GGCC	4 cut(s)	38, 177, 625, 1004
Bso31I	GGTCTC	1 cut(s)	649
Bsp119I	TTCGAA	1 cut(s)	1023
Bsp1286I	GDGCHC	2 cut(s)	237, 378
Bsp13I	TCCGGA	1 cut(s)	588
Bsp143I	GATC	4 cut(s)	96, 252, 604, 837
Bsp19I	CCATGG	1 cut(s)	979
BspACI	CCGC	5 cut(s)	160, 226, 423, 546, 578
BspANI	GGCC	4 cut(s)	38, 177, 625, 1004
BspCNI	CTCAG	1 cut(s)	1080
BspDI	ATCGAT	1 cut(s)	389
BspEI	TCCGGA	1 cut(s)	588
BspLI	GGNNCC	2 cut(s)	302, 606
BspMI	ACCTGC	1 cut(s)	547
BspPI	GGATC	2 cut(s)	599, 612
BspT104I	TTCGAA	1 cut(s)	1023
BspTNI	GGTCTC	1 cut(s)	649
BsrBI	CCGCTC	1 cut(s)	423
BsrI	ACTGG	1 cut(s)	146
BssECI	CCNNGG	2 cut(s)	280, 979
BssMI	GATC	4 cut(s)	96, 252, 604, 837
BssSI	CACGAG	2 cut(s)	184, 310
BssT1I	CCWWGG	1 cut(s)	979
Bst2BI	CACGAG	2 cut(s)	184, 310
Bst2UI	CCWGG	2 cut(s)	263, 354
Bst4CI	ACNGT	3 cut(s)	47, 118, 871
Bst6I	CTCTTC	1 cut(s)	185
BstBAI	YACGTR	1 cut(s)	379
BstBI	TTCGAA	1 cut(s)	1023
BstC8I	GCNNGC	3 cut(s)	722, 767, 1038
BstDEI	CTNAG	2 cut(s)	823, 1067
BstDSI	CCRYGG	1 cut(s)	979
BstF5I	GGATG	1 cut(s)	578
BstHHI	GCGC	1 cut(s)	191
BstKTI	GATC	4 cut(s)	99, 255, 607, 840
BstMAI	GTCTC	2 cut(s)	278, 649
BstMBI	GATC	4 cut(s)	96, 252, 604, 837
BstMCI	CGRYCG	1 cut(s)	99
BstNI	CCWGG	2 cut(s)	263, 354
BstNSI	RCATGY	4 cut(s)	166, 769, 1036, 1133
BstSCI	CCNGG	2 cut(s)	261, 352
BstV1I	GCAGC	1 cut(s)	840
BstV2I	GAAGAC	2 cut(s)	84, 135
BstX2I	RGATCY	1 cut(s)	604
BstXI	CCANNNNNNTGG	2 cut(s)	16, 895
BstYI	RGATCY	1 cut(s)	604
Bsu15I	ATCGAT	1 cut(s)	389
BsuI	GTATCC	1 cut(s)	495
BsuRI	GGCC	4 cut(s)	38, 177, 625, 1004
BsuTUI	ATCGAT	1 cut(s)	389
BtgI	CCRYGG	1 cut(s)	979
BtsCI	GGATG	1 cut(s)	578
BtsIMutI	CAGTG	4 cut(s)	123, 833, 867, 1075
BveI	ACCTGC	1 cut(s)	547
Cac8I	GCNNGC	3 cut(s)	722, 767, 1038
CfoI	GCGC	1 cut(s)	191
Cfr13I	GGNCC	3 cut(s)	168, 300, 425
ClaI	ATCGAT	1 cut(s)	389
CpoI	CGGWCCG	1 cut(s)	425
CseI	GACGC	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	820
CspCI	CAANNNNNGTGG	4 cut(s)	28, 63, 513, 548
CspI	CGGWCCG	1 cut(s)	425
CviAII	CATG	8 cut(s)	163, 292, 711, 766, 889, 980, 1033, 1130
CviQI	GTAC	1 cut(s)	820
DdeI	CTNAG	2 cut(s)	823, 1067
DpnI	GATC	4 cut(s)	98, 254, 606, 839
DpnII	GATC	4 cut(s)	96, 252, 604, 837
EaeI	YGGCCR	1 cut(s)	1002
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
Eco130I	CCWWGG	1 cut(s)	979
Eco147I	AGGCCT	1 cut(s)	177
Eco24I	GRGCYC	1 cut(s)	237
Eco31I	GGTCTC	1 cut(s)	649
Eco32I	GATATC	2 cut(s)	387, 483
Eco47I	GGWCC	3 cut(s)	168, 300, 425
Eco72I	CACGTG	1 cut(s)	379
EcoO109I	RGGNCCY	1 cut(s)	300
EcoRII	CCWGG	2 cut(s)	261, 352
EcoRV	GATATC	2 cut(s)	387, 483
EcoT14I	CCWWGG	1 cut(s)	979
EcoT38I	GRGCYC	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	979
FaeI	CATG	8 cut(s)	166, 295, 714, 769, 892, 983, 1036, 1133
FaqI	GGGAC	1 cut(s)	659
FatI	CATG	8 cut(s)	162, 291, 710, 765, 888, 979, 1032, 1129
FauI	CCCGC	1 cut(s)	571
FbaI	TGATCA	1 cut(s)	837
Fnu4HI	GCNGC	2 cut(s)	547, 829
FokI	GGATG	1 cut(s)	585
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	2 cut(s)	547, 829
FspBI	CTAG	1 cut(s)	627
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	2 cut(s)	547, 829
HaeIII	GGCC	4 cut(s)	38, 177, 625, 1004
HapII	CCGG	4 cut(s)	405, 428, 589, 608
HgaI	GACGC	1 cut(s)	148
HhaI	GCGC	1 cut(s)	191
Hin1II	CATG	8 cut(s)	166, 295, 714, 769, 892, 983, 1036, 1133
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HinfI	GANTC	2 cut(s)	271, 921
HpaII	CCGG	4 cut(s)	405, 428, 589, 608
HphI	GGTGA	4 cut(s)	84, 368, 877, 995
Hpy166II	GTNNAC	1 cut(s)	773
Hpy188I	TCNGA	3 cut(s)	284, 323, 1086
Hpy188III	TCNNGA	2 cut(s)	17, 589
Hpy8I	GTNNAC	1 cut(s)	773
Hpy99I	CGWCG	1 cut(s)	142
HpyAV	CCTTC	4 cut(s)	211, 223, 328, 1143
HpyCH4III	ACNGT	3 cut(s)	47, 118, 871
HpyCH4IV	ACGT	2 cut(s)	378, 531
HpyCH4V	TGCA	3 cut(s)	398, 437, 556
HpyF3I	CTNAG	2 cut(s)	823, 1067
HpySE526I	ACGT	2 cut(s)	378, 531
Hsp92II	CATG	8 cut(s)	166, 295, 714, 769, 892, 983, 1036, 1133
HspAI	GCGC	1 cut(s)	189
Kpn2I	TCCGGA	1 cut(s)	588
Ksp22I	TGATCA	1 cut(s)	837
Kzo9I	GATC	4 cut(s)	96, 252, 604, 837
LmnI	GCTCC	4 cut(s)	147, 373, 407, 420
Lsp1109I	GCAGC	1 cut(s)	840
MaeI	CTAG	1 cut(s)	627
MaeII	ACGT	2 cut(s)	378, 531
MaeIII	GTNAC	3 cut(s)	90, 448, 997
MalI	GATC	4 cut(s)	98, 254, 606, 839
MbiI	CCGCTC	1 cut(s)	423
MboI	GATC	4 cut(s)	96, 252, 604, 837
MboII	GAAGA	6 cut(s)	89, 140, 172, 208, 490, 946
MflI	RGATCY	1 cut(s)	604
MhlI	GDGCHC	2 cut(s)	237, 378
MluCI	AATT	4 cut(s)	324, 525, 789, 1026
MlyI	GAGTC	1 cut(s)	280
MmeI	TCCRAC	1 cut(s)	479
MroI	TCCGGA	1 cut(s)	588
MseI	TTAA	2 cut(s)	348, 528
MslI	CAYNNNNRTG	3 cut(s)	248, 893, 1130
MspI	CCGG	4 cut(s)	405, 428, 589, 608
MspR9I	CCNGG	2 cut(s)	263, 354
MvaI	CCWGG	2 cut(s)	263, 354
NcoI	CCATGG	1 cut(s)	979
NdeII	GATC	4 cut(s)	96, 252, 604, 837
NlaIII	CATG	8 cut(s)	166, 295, 714, 769, 892, 983, 1036, 1133
NlaIV	GGNNCC	2 cut(s)	302, 606
NmuCI	GTSAC	3 cut(s)	90, 448, 997
NspI	RCATGY	4 cut(s)	166, 769, 1036, 1133
NspV	TTCGAA	1 cut(s)	1023
OliI	CACNNNNGTG	1 cut(s)	1130
PaeI	GCATGC	1 cut(s)	769
PceI	AGGCCT	1 cut(s)	177
PciI	ACATGT	1 cut(s)	1129
PcsI	WCGNNNNNNNCGW	3 cut(s)	69, 78, 246
PfeI	GAWTC	1 cut(s)	921
PflMI	CCANNNNNTGG	1 cut(s)	711
PkrI	GCNGC	2 cut(s)	548, 830
Ple19I	CGATCG	1 cut(s)	99
PleI	GAGTC	1 cut(s)	279
PmaCI	CACGTG	1 cut(s)	379
PmlI	CACGTG	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	279
Ppu21I	YACGTR	1 cut(s)	379
PpuMI	RGGWCCY	1 cut(s)	300
PscI	ACATGT	1 cut(s)	1129
Psp5II	RGGWCCY	1 cut(s)	300
Psp6I	CCWGG	2 cut(s)	261, 352
PspCI	CACGTG	1 cut(s)	379
PspGI	CCWGG	2 cut(s)	261, 352
PspN4I	GGNNCC	2 cut(s)	302, 606
PspPI	GGNCC	3 cut(s)	168, 300, 425
PspPPI	RGGWCCY	1 cut(s)	300
PsuI	RGATCY	1 cut(s)	604
PvuI	CGATCG	1 cut(s)	99
RsaI	GTAC	1 cut(s)	821
RsaNI	GTAC	1 cut(s)	820
RseI	CAYNNNNRTG	3 cut(s)	248, 893, 1130
Rsr2I	CGGWCCG	1 cut(s)	425
RsrII	CGGWCCG	1 cut(s)	425
SaqAI	TTAA	2 cut(s)	348, 528
SatI	GCNGC	2 cut(s)	547, 829
Sau3AI	GATC	4 cut(s)	96, 252, 604, 837
Sau96I	GGNCC	3 cut(s)	168, 300, 425
SchI	GAGTC	1 cut(s)	280
ScrFI	CCNGG	2 cut(s)	263, 354
SduI	GDGCHC	2 cut(s)	237, 378
SfuI	TTCGAA	1 cut(s)	1023
SinI	GGWCC	3 cut(s)	168, 300, 425
SmiMI	CAYNNNNRTG	3 cut(s)	248, 893, 1130
SphI	GCATGC	1 cut(s)	769
Sse9I	AATT	4 cut(s)	324, 525, 789, 1026
SseBI	AGGCCT	1 cut(s)	177
SsiI	CCGC	5 cut(s)	160, 226, 423, 546, 578
SspMI	CTAG	1 cut(s)	627
StuI	AGGCCT	1 cut(s)	177
StyD4I	CCNGG	2 cut(s)	261, 352
StyI	CCWWGG	1 cut(s)	979
TaaI	ACNGT	3 cut(s)	47, 118, 871
TaiI	ACGT	2 cut(s)	381, 534
TaqI	TCGA	7 cut(s)	33, 63, 99, 332, 389, 1023, 1118
TasI	AATT	4 cut(s)	324, 525, 789, 1026
TauI	GCSGC	1 cut(s)	549
TfiI	GAWTC	1 cut(s)	921
Tru1I	TTAA	2 cut(s)	348, 528
Tru9I	TTAA	2 cut(s)	348, 528
TscAI	CASTG	4 cut(s)	123, 840, 874, 1075
TseFI	GTSAC	3 cut(s)	90, 448, 997
TseI	GCWGC	1 cut(s)	828
Tsp45I	GTSAC	3 cut(s)	90, 448, 997
TspDTI	ATGAA	3 cut(s)	90, 280, 699
TspGWI	ACGGA	2 cut(s)	238, 247
TspRI	CASTG	4 cut(s)	123, 840, 874, 1075
Van91I	CCANNNNNTGG	1 cut(s)	711
VpaK11BI	GGWCC	3 cut(s)	168, 300, 425
XceI	RCATGY	4 cut(s)	166, 769, 1036, 1133
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1129
XspI	CTAG	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.