Rw0G022500

oligopeptide transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig01044
OG0003716
Physical Location & Seq
Forward (+)
44913 .. 47159
2247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G022500.1

Sequence Viewer

Length: 1437 bp
ATGGCTACCATACCTCTGGAAACCGAGCTTGTCGAGGCCAAACACGGTGGCAAAGAAGTTATCGACATTGACGATGAAGACGATGAGTTGTCACCGATCGAGGAGGTTCGTCTAACAGTGTCAAACGAAGACGACCCGACGCTCCCAGTATGGACATTCCGCATGTGGTCCATAGGCCTCTTCTCGTGCGCCCTCCTCTCCTTCCTCAACACCTTCTTCTCCTACCGCACCGAGCCCCTCGTCATCTCCGTGATCTCCGTCCAGGTGGCGAGTCTCCCCCTCGGAAAGTTCATGGCGAGGACCCTGCCCACGAGGAAGTTCCGAATTGGCTCGAAGGAGTTTTCACTTAATCCTGGTGAGTTCAACATCAAGGAGCACGTGTTGATATCGATTTTTGCAAATGCCGGAGCAGGGTTTGGGAGCGGTCCGGCTTATGCAGTTGGGATTGTGACTATCGTAAAGGCGTTTTATGTGAGGAAGATATCTTTCTTGGCGAGTTGGATACTTGTTATTACCACGCAGGTTTTGGGGTATGGATGGGCGGGTATTCTCCGGAAGTATGTGGTGGATCCGGCTACAATGTGGTGGCCTAGTAGTCTGGTTCAGGTCTCTTTGTTTAGGGCTCTACACGAGAAAGACAACAACCGCATGTCCAGAGGAAAATTCTTTCTGATTGCGCTGGTATGCAGCTTCTCTTGGTATGTTGTCCCAGACTACCTTTTCACAACTATATCAACCATTTCATGGGTCTGCTGGCTTTTCCCCAAGTCAATAACAGCACATCAAATCGGGTCGGGCATGCGTGGACTTGGTATTGGGTCACTTACATTGGATTGGTCTGTCATAGCCTCGTACTTAGGCAGCCCACTGATCAGCCCATTTTTTGCCATTGTCAATATCACTGTTGGCTATATTCTCACCATGTATGTGGTATTACCGACTGCCTATTGGGGATTCAACTTATACAATGCCAAGAACTTCGCAATCTTCTCTAAAAACTTGTTTGATGACCATGGTGAAATATATAATGTCACGGCCATTGTCAATGACAAGTTCGAAATTGACATGCCTGCCTACAAAAAACAAGGACATATAAACCTCAGTGTGTTCTTTTCTCTGACCTACGGGATTGGCTTCGCTGGTGTTATATCGACCATCACACATGTGGCTCTATTCAATGGAAGGGAGATGTATGAGAAATACAAAGCTGCACATACTGGAAAGGTGGACATCCACACCAGATTGATGAGAAATTACAGAGACATACCTACCTGGTGGTTTCATATTCTGCTTTTGTTGTCGCTTGCACTCTCTCTGGCGTTATGCATTTTCATGAAAGATGAGGTACAACTGCCTTGGTGGGGACTCCTTTTTGCAGCTGCAATTGCATCGGTTTTCACTCTTCCGATTAGCGTTATAACGGCGACAACGAATCAG

Protein Analysis

479

Amino Acids

53.79

Weight (kDa)

7.15

Isoelectric Point (pI)

25.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OPT PF03169 50 - 479 4.2e-112 OPT oligopeptide transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1418
Acc36I ACCTGC 1 cut(s) 511
AccB7I CCANNNNNTGG 1 cut(s) 744
AccBSI CCGCTC 1 cut(s) 423
AccIII TCCGGA 1 cut(s) 552
AciI CCGC 5 cut(s) 160, 226, 423, 542, 646
AclWI GGATC 2 cut(s) 563, 576
AcoI YGGCCR 1 cut(s) 1035
AcsI RAATTY 1 cut(s) 662
AcvI CACGTG 1 cut(s) 379
AfaI GTAC 2 cut(s) 854, 1347
AfiI CCNNNNNNNGG 3 cut(s) 411, 744, 1361
AflIII ACRYGT 2 cut(s) 378, 1162
AgsI TTSAA 3 cut(s) 364, 958, 1177
AjnI CCWGG 3 cut(s) 261, 352, 1271
AleI CACNNNNGTG 1 cut(s) 1163
AluBI AGCT 4 cut(s) 28, 690, 1208, 1379
AluI AGCT 4 cut(s) 28, 690, 1208, 1379
Alw21I GWGCWC 1 cut(s) 378
Alw26I GTCTC 3 cut(s) 278, 613, 1254
AlwI GGATC 2 cut(s) 563, 576
Aor13HI TCCGGA 1 cut(s) 552
AoxI GGCC 4 cut(s) 36, 175, 587, 1035
ApeKI GCWGC 5 cut(s) 687, 861, 1208, 1376, 1379
ApoI RAATTY 1 cut(s) 662
AspLEI GCGC 2 cut(s) 191, 679
AspS9I GGNCC 3 cut(s) 168, 300, 425
AsuHPI GGTGA 4 cut(s) 84, 368, 910, 1028
AsuII TTCGAA 1 cut(s) 1056
AvaII GGWCC 3 cut(s) 168, 300, 425
BamHI GGATCC 1 cut(s) 568
BanII GRGCYC 2 cut(s) 237, 625
BauI CACGAG 3 cut(s) 184, 310, 629
BbrPI CACGTG 1 cut(s) 379
BbsI GAAGAC 2 cut(s) 84, 135
Bbv12I GWGCWC 1 cut(s) 378
BbvI GCAGC 5 cut(s) 699, 873, 1195, 1366, 1388
BccI CCATC 2 cut(s) 531, 1163
BceAI ACGGC 1 cut(s) 1050
BcgI CGANNNNNNTGC 4 cut(s) 286, 320, 1371, 1405
BciT130I CCWGG 3 cut(s) 263, 354, 1273
BciVI GTATCC 1 cut(s) 495
BclI TGATCA 1 cut(s) 870
BcoDI GTCTC 3 cut(s) 278, 613, 1254
BfaI CTAG 1 cut(s) 591
BfuAI ACCTGC 1 cut(s) 511
BfuI GTATCC 1 cut(s) 495
BisI GCNGC 5 cut(s) 688, 862, 1209, 1377, 1380
BlsI GCNGC 5 cut(s) 689, 863, 1210, 1378, 1381
Bme1390I CCNGG 3 cut(s) 263, 354, 1273
Bme18I GGWCC 3 cut(s) 168, 300, 425
BmgT120I GGNCC 3 cut(s) 168, 300, 425
BmiI GGNNCC 2 cut(s) 302, 570
BmrFI CCNGG 3 cut(s) 263, 354, 1273
BmrI ACTGGG 1 cut(s) 140
BmsI GCATC 1 cut(s) 1397
BmuI ACTGGG 1 cut(s) 140
BpiI GAAGAC 2 cut(s) 84, 135
Bpu14I TTCGAA 1 cut(s) 1056
Bsa29I ATCGAT 1 cut(s) 389
BsaAI YACGTR 1 cut(s) 379
BsaI GGTCTC 1 cut(s) 613
BsaJI CCNNGG 3 cut(s) 280, 1012, 1355
BsaWI WCCGGW 1 cut(s) 552
BsaXI ACNNNNNCTCC 2 cut(s) 365, 395
Bsc4I CCNNNNNNNGG 3 cut(s) 411, 744, 1361
Bse1I ACTGG 2 cut(s) 146, 1222
BseAI TCCGGA 1 cut(s) 552
BseBI CCWGG 3 cut(s) 263, 354, 1273
BseCI ATCGAT 1 cut(s) 389
BseDI CCNNGG 3 cut(s) 280, 1012, 1355
BseGI GGATG 2 cut(s) 542, 1230
BseLI CCNNNNNNNGG 3 cut(s) 411, 744, 1361
BseMII CTCAG 1 cut(s) 1114
BseNI ACTGG 2 cut(s) 146, 1222
BseRI GAGGAG 2 cut(s) 116, 185
BseXI GCAGC 5 cut(s) 699, 873, 1195, 1366, 1388
BsgI GTGCAG 1 cut(s) 1194
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 4 cut(s) 38, 177, 589, 1037
BshVI ATCGAT 1 cut(s) 389
BsiEI CGRYCG 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 378
BsiSI CCGG 4 cut(s) 405, 428, 553, 572
BslFI GGGAC 2 cut(s) 692, 1377
BslI CCNNNNNNNGG 3 cut(s) 411, 744, 1361
BsmAI GTCTC 3 cut(s) 278, 613, 1254
BsmFI GGGAC 2 cut(s) 692, 1377
BsnI GGCC 4 cut(s) 38, 177, 589, 1037
Bso31I GGTCTC 1 cut(s) 613
Bsp119I TTCGAA 1 cut(s) 1056
Bsp1286I GDGCHC 3 cut(s) 237, 378, 625
Bsp13I TCCGGA 1 cut(s) 552
Bsp143I GATC 4 cut(s) 96, 252, 568, 870
Bsp19I CCATGG 1 cut(s) 1012
BspACI CCGC 5 cut(s) 160, 226, 423, 542, 646
BspANI GGCC 4 cut(s) 38, 177, 589, 1037
BspCNI CTCAG 1 cut(s) 1113
BspDI ATCGAT 1 cut(s) 389
BspEI TCCGGA 1 cut(s) 552
BspHI TCATGA 1 cut(s) 1332
BspLI GGNNCC 2 cut(s) 302, 570
BspMI ACCTGC 1 cut(s) 511
BspPI GGATC 2 cut(s) 563, 576
BspT104I TTCGAA 1 cut(s) 1056
BspTNI GGTCTC 1 cut(s) 613
BsrBI CCGCTC 1 cut(s) 423
BsrI ACTGG 2 cut(s) 146, 1222
BssECI CCNNGG 3 cut(s) 280, 1012, 1355
BssMI GATC 4 cut(s) 96, 252, 568, 870
BssSI CACGAG 3 cut(s) 184, 310, 629
BssT1I CCWWGG 2 cut(s) 1012, 1355
Bst2BI CACGAG 3 cut(s) 184, 310, 629
Bst2UI CCWGG 3 cut(s) 263, 354, 1273
Bst4CI ACNGT 3 cut(s) 47, 118, 904
Bst6I CTCTTC 2 cut(s) 185, 1407
BstBAI YACGTR 1 cut(s) 379
BstBI TTCGAA 1 cut(s) 1056
BstC8I GCNNGC 4 cut(s) 755, 800, 1071, 1305
BstDEI CTNAG 2 cut(s) 856, 1100
BstDSI CCRYGG 1 cut(s) 1012
BstF5I GGATG 2 cut(s) 542, 1230
BstHHI GCGC 2 cut(s) 191, 679
BstKTI GATC 4 cut(s) 99, 255, 571, 873
BstMAI GTCTC 3 cut(s) 278, 613, 1254
BstMBI GATC 4 cut(s) 96, 252, 568, 870
BstMCI CGRYCG 1 cut(s) 99
BstMWI GCNNNNNNNGC 1 cut(s) 1385
BstNI CCWGG 3 cut(s) 263, 354, 1273
BstNSI RCATGY 5 cut(s) 166, 652, 802, 1069, 1166
BstSCI CCNGG 3 cut(s) 261, 352, 1271
BstV1I GCAGC 5 cut(s) 699, 873, 1195, 1366, 1388
BstV2I GAAGAC 2 cut(s) 84, 135
BstX2I RGATCY 1 cut(s) 568
BstXI CCANNNNNNTGG 2 cut(s) 16, 928
BstYI RGATCY 1 cut(s) 568
Bsu15I ATCGAT 1 cut(s) 389
BsuI GTATCC 1 cut(s) 495
BsuRI GGCC 4 cut(s) 38, 177, 589, 1037
BsuTUI ATCGAT 1 cut(s) 389
BtgI CCRYGG 1 cut(s) 1012
BtsCI GGATG 2 cut(s) 542, 1230
BtsIMutI CAGTG 4 cut(s) 123, 866, 900, 1108
BveI ACCTGC 1 cut(s) 511
Cac8I GCNNGC 4 cut(s) 755, 800, 1071, 1305
CciI TCATGA 1 cut(s) 1332
CfoI GCGC 2 cut(s) 191, 679
Cfr13I GGNCC 3 cut(s) 168, 300, 425
ClaI ATCGAT 1 cut(s) 389
CpoI CGGWCCG 1 cut(s) 425
CseI GACGC 1 cut(s) 148
CsiI ACCWGGT 1 cut(s) 1271
Csp6I GTAC 2 cut(s) 853, 1346
CspCI CAANNNNNGTGG 2 cut(s) 28, 63
CspI CGGWCCG 1 cut(s) 425
CviQI GTAC 2 cut(s) 853, 1346
DdeI CTNAG 2 cut(s) 856, 1100
DpnI GATC 4 cut(s) 98, 254, 570, 872
DpnII GATC 4 cut(s) 96, 252, 568, 870
EaeI YGGCCR 1 cut(s) 1035
Eam1104I CTCTTC 2 cut(s) 185, 1407
EarI CTCTTC 2 cut(s) 185, 1407
Eco130I CCWWGG 2 cut(s) 1012, 1355
Eco147I AGGCCT 1 cut(s) 177
Eco24I GRGCYC 2 cut(s) 237, 625
Eco31I GGTCTC 1 cut(s) 613
Eco32I GATATC 2 cut(s) 387, 483
Eco47I GGWCC 3 cut(s) 168, 300, 425
Eco72I CACGTG 1 cut(s) 379
EcoO109I RGGNCCY 1 cut(s) 300
EcoRII CCWGG 3 cut(s) 261, 352, 1271
EcoRV GATATC 2 cut(s) 387, 483
EcoT14I CCWWGG 2 cut(s) 1012, 1355
EcoT22I ATGCAT 1 cut(s) 1328
EcoT38I GRGCYC 2 cut(s) 237, 625
ErhI CCWWGG 2 cut(s) 1012, 1355
FaqI GGGAC 2 cut(s) 692, 1377
FauI CCCGC 1 cut(s) 535
FbaI TGATCA 1 cut(s) 870
Fnu4HI GCNGC 5 cut(s) 688, 862, 1209, 1377, 1380
FokI GGATG 2 cut(s) 549, 1217
FriOI GRGCYC 2 cut(s) 237, 625
Fsp4HI GCNGC 5 cut(s) 688, 862, 1209, 1377, 1380
FspBI CTAG 1 cut(s) 591
GlaI GCGC 2 cut(s) 190, 678
GluI GCNGC 5 cut(s) 688, 862, 1209, 1377, 1380
HaeIII GGCC 4 cut(s) 38, 177, 589, 1037
HapII CCGG 4 cut(s) 405, 428, 553, 572
HgaI GACGC 1 cut(s) 148
HhaI GCGC 2 cut(s) 191, 679
Hin6I GCGC 2 cut(s) 189, 677
HinP1I GCGC 2 cut(s) 189, 677
HinfI GANTC 4 cut(s) 271, 954, 1365, 1432
HpaII CCGG 4 cut(s) 405, 428, 553, 572
HphI GGTGA 4 cut(s) 84, 368, 910, 1028
Hpy166II GTNNAC 2 cut(s) 806, 1228
Hpy188I TCNGA 5 cut(s) 284, 323, 672, 1119, 1407
Hpy188III TCNNGA 4 cut(s) 17, 553, 654, 1333
Hpy8I GTNNAC 2 cut(s) 806, 1228
Hpy99I CGWCG 1 cut(s) 142
HpyAV CCTTC 4 cut(s) 211, 223, 328, 1176
HpyCH4III ACNGT 3 cut(s) 47, 118, 904
HpyCH4IV ACGT 1 cut(s) 378
HpyCH4V TGCA 9 cut(s) 398, 437, 687, 1211, 1307, 1326, 1376, 1382, 1388
HpyF10VI GCNNNNNNNGC 1 cut(s) 1385
HpyF3I CTNAG 2 cut(s) 856, 1100
HpySE526I ACGT 1 cut(s) 378
HspAI GCGC 2 cut(s) 189, 677
Kpn2I TCCGGA 1 cut(s) 552
Ksp22I TGATCA 1 cut(s) 870
Kzo9I GATC 4 cut(s) 96, 252, 568, 870
LmnI GCTCC 4 cut(s) 147, 373, 407, 420
Lsp1109I GCAGC 5 cut(s) 699, 873, 1195, 1366, 1388
LweI GCATC 1 cut(s) 1397
MabI ACCWGGT 1 cut(s) 1271
MaeI CTAG 1 cut(s) 591
MaeII ACGT 1 cut(s) 378
MaeIII GTNAC 4 cut(s) 90, 448, 819, 1030
MalI GATC 4 cut(s) 98, 254, 570, 872
MbiI CCGCTC 1 cut(s) 423
MboI GATC 4 cut(s) 96, 252, 568, 870
MboII GAAGA 7 cut(s) 89, 140, 172, 208, 490, 979, 1394
MfeI CAATTG 1 cut(s) 1383
MflI RGATCY 1 cut(s) 568
MhlI GDGCHC 3 cut(s) 237, 378, 625
MluCI AATT 5 cut(s) 324, 662, 1059, 1252, 1383
MlyI GAGTC 2 cut(s) 280, 1359
MmeI TCCRAC 1 cut(s) 479
Mph1103I ATGCAT 1 cut(s) 1328
MroI TCCGGA 1 cut(s) 552
MseI TTAA 1 cut(s) 348
MslI CAYNNNNRTG 4 cut(s) 248, 926, 1163, 1331
MspA1I CMGCKG 1 cut(s) 1379
MspI CCGG 4 cut(s) 405, 428, 553, 572
MspR9I CCNGG 3 cut(s) 263, 354, 1273
MunI CAATTG 1 cut(s) 1383
MvaI CCWGG 3 cut(s) 263, 354, 1273
MwoI GCNNNNNNNGC 1 cut(s) 1385
NcoI CCATGG 1 cut(s) 1012
NdeII GATC 4 cut(s) 96, 252, 568, 870
NlaIV GGNNCC 2 cut(s) 302, 570
NmuCI GTSAC 4 cut(s) 90, 448, 819, 1030
NsiI ATGCAT 1 cut(s) 1328
NspI RCATGY 5 cut(s) 166, 652, 802, 1069, 1166
NspV TTCGAA 1 cut(s) 1056
OliI CACNNNNGTG 1 cut(s) 1163
PaeI GCATGC 1 cut(s) 802
PagI TCATGA 1 cut(s) 1332
PceI AGGCCT 1 cut(s) 177
PciI ACATGT 1 cut(s) 1162
PcsI WCGNNNNNNNCGW 4 cut(s) 69, 78, 246, 1427
PfeI GAWTC 2 cut(s) 954, 1432
PflMI CCANNNNNTGG 1 cut(s) 744
PkrI GCNGC 5 cut(s) 689, 863, 1210, 1378, 1381
Ple19I CGATCG 1 cut(s) 99
PleI GAGTC 2 cut(s) 279, 1359
PmaCI CACGTG 1 cut(s) 379
PmlI CACGTG 1 cut(s) 379
PpsI GAGTC 2 cut(s) 279, 1359
Ppu21I YACGTR 1 cut(s) 379
PpuMI RGGWCCY 1 cut(s) 300
PscI ACATGT 1 cut(s) 1162
PsiI TTATAA 1 cut(s) 1418
Psp5II RGGWCCY 1 cut(s) 300
Psp6I CCWGG 3 cut(s) 261, 352, 1271
PspCI CACGTG 1 cut(s) 379
PspGI CCWGG 3 cut(s) 261, 352, 1271
PspN4I GGNNCC 2 cut(s) 302, 570
PspPI GGNCC 3 cut(s) 168, 300, 425
PspPPI RGGWCCY 1 cut(s) 300
PsuI RGATCY 1 cut(s) 568
PvuI CGATCG 1 cut(s) 99
PvuII CAGCTG 1 cut(s) 1379
RsaI GTAC 2 cut(s) 854, 1347
RsaNI GTAC 2 cut(s) 853, 1346
RseI CAYNNNNRTG 4 cut(s) 248, 926, 1163, 1331
Rsr2I CGGWCCG 1 cut(s) 425
RsrII CGGWCCG 1 cut(s) 425
SaqAI TTAA 1 cut(s) 348
SatI GCNGC 5 cut(s) 688, 862, 1209, 1377, 1380
Sau3AI GATC 4 cut(s) 96, 252, 568, 870
Sau96I GGNCC 3 cut(s) 168, 300, 425
SchI GAGTC 2 cut(s) 280, 1359
ScrFI CCNGG 3 cut(s) 263, 354, 1273
SduI GDGCHC 3 cut(s) 237, 378, 625
SexAI ACCWGGT 1 cut(s) 1271
SfaNI GCATC 1 cut(s) 1397
SfuI TTCGAA 1 cut(s) 1056
SinI GGWCC 3 cut(s) 168, 300, 425
SmiMI CAYNNNNRTG 4 cut(s) 248, 926, 1163, 1331
SphI GCATGC 1 cut(s) 802
Sse9I AATT 5 cut(s) 324, 662, 1059, 1252, 1383
SseBI AGGCCT 1 cut(s) 177
SsiI CCGC 5 cut(s) 160, 226, 423, 542, 646
SspMI CTAG 1 cut(s) 591
StuI AGGCCT 1 cut(s) 177
StyD4I CCNGG 3 cut(s) 261, 352, 1271
StyI CCWWGG 2 cut(s) 1012, 1355
TaaI ACNGT 3 cut(s) 47, 118, 904
TaiI ACGT 1 cut(s) 381
TaqI TCGA 7 cut(s) 33, 63, 99, 332, 389, 1056, 1151
TasI AATT 5 cut(s) 324, 662, 1059, 1252, 1383
TfiI GAWTC 2 cut(s) 954, 1432
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TscAI CASTG 4 cut(s) 123, 873, 907, 1108
TseFI GTSAC 4 cut(s) 90, 448, 819, 1030
TseI GCWGC 5 cut(s) 687, 861, 1208, 1376, 1379
Tsp45I GTSAC 4 cut(s) 90, 448, 819, 1030
TspDTI ATGAA 6 cut(s) 90, 280, 732, 1271, 1321, 1349
TspGWI ACGGA 2 cut(s) 238, 247
TspRI CASTG 4 cut(s) 123, 873, 907, 1108
Van91I CCANNNNNTGG 1 cut(s) 744
VpaK11BI GGWCC 3 cut(s) 168, 300, 425
XapI RAATTY 1 cut(s) 662
XceI RCATGY 5 cut(s) 166, 652, 802, 1069, 1166
XcmI CCANNNNNNNNNTGG 2 cut(s) 523, 1162
XspI CTAG 1 cut(s) 591
Zsp2I ATGCAT 1 cut(s) 1328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.