Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0020403

Physical Location & Seq

Genomic Coordinates Forward (+)

13181388 .. 13182724

Gene Structure 1337 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001265

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGAATCTGAGTATGAGAAGTACACGCCAGTGACTGCAGACTGGTGCAGGCAAGCTTGCCTAGCTGATTGTTTCTGTGCCCTTGCCAATTTCAGAAACGGGGATTGTTGGTTAAAGGGAATGCCTCTTCGGAATGGGAAAATCAACCCTAGTAGTGGTGTGAAAGCTCTCATCAAAATTAGGAGAGACAATTCCACTTTGAAACTGCCACATTCACCACATTCAAGAACAAAATGCAACTCAACTCTCTTGCTCGTTGGATCGGTGCTGTTGAGTAGCTCCGGGTTCCTAAACTTCCTCTTAGTGCTAATAACCTATTTGGTTGTTTCTGGTACTTACCGTAGAAGACCAAACATGATTCAACCTTACGCAGTCTTGTCGGGTATGAACCTGATTTGTTTCATTTATGAAGAGCTAAACAAAGCTACCATTGGATTCAAGGAAGAACTAAGTCGTGGTGCTTTTGGAACAGTTTTTAGAGGAGTTTTAGTTTCTGAGAAATGCGTAGCTGTCAAAAGACTGAACAATATGCACCGAATTCTTGTGTATGAGTTCATGAGCAATGGTTCTCTAGCAAGGTTCCTCTTTGGAAAGTCAAGGCCGAATTGGTATCAAAGGAAGCAGATTGCCTTGGGAACTGCTAGAGGGCTCTTGTATTTACATAAGGAGTGTAGCAACCAAATCATATATTGCGACATTAAGCCTCAAAATATTCTCTTAGATGACTCTTTCATGGCAAGAATTTTCGACTTTGGATTAGCCAAGCTTTTGAAAACGGACCAGACTCAAACTATTACGGGAATCAGAGGGACAAAAAGGTACGTTGCCCCCGAATGGTTTAAAAACATCCCGATCACAACCAAGGTGGATGTTTACAGCTATGGCATTTTGTTACTGGAGATTATTTTTTGCAGAAAGTATTTTGAAGCAGAGGCAGAGAATGAACAACAAATGATACTAGCGGATTGGGCTTGTGATTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase

Protein Analysis

328

Amino Acids

37.31

Weight (kDa)

9.21

Isoelectric Point (pI)

38.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	176 - 317	2.4e-32	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	178 - 304	7.7e-23	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020403)

Species	Orthologous Gene IDs
malus_domestica	MD11G1024800.v1.1 MD11G1024900.v1.1
rosa_chinensis	RchiOBHm_Chr5g0077611
rosa_laevigata	RLG00000001265
rosa_roxburghii	Rroxscaffold_1G00003770
rosa_rugosa	Rorug07G0280800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	962
AclWI	GGATC	1 cut(s)	268
AcsI	RAATTY	2 cut(s)	537, 741
AfaI	GTAC	3 cut(s)	23, 334, 821
AfiI	CCNNNNNNNGG	2 cut(s)	155, 834
AgsI	TTSAA	6 cut(s)	202, 225, 362, 439, 772, 926
AleI	CACNNNNGTG	1 cut(s)	29
AluBI	AGCT	9 cut(s)	56, 65, 167, 279, 415, 425, 509, 766, 879
AluI	AGCT	9 cut(s)	56, 65, 167, 279, 415, 425, 509, 766, 879
Alw26I	GTCTC	1 cut(s)	180
AlwI	GGATC	1 cut(s)	268
AlwNI	CAGNNNCTG	1 cut(s)	35
AoxI	GGCC	1 cut(s)	599
ApoI	RAATTY	2 cut(s)	537, 741
AspS9I	GGNCC	1 cut(s)	778
AsuC2I	CCSGG	1 cut(s)	283
AsuHPI	GGTGA	1 cut(s)	207
AvaII	GGWCC	1 cut(s)	778
BaeGI	GKGCMC	1 cut(s)	82
BanII	GRGCYC	1 cut(s)	651
BbsI	GAAGAC	1 cut(s)	352
BcgI	CGANNNNNNTGC	2 cut(s)	360, 394
BcnI	CCSGG	1 cut(s)	283
BcoDI	GTCTC	1 cut(s)	180
BfaI	CTAG	5 cut(s)	62, 150, 572, 642, 959
BfmI	CTRYAG	1 cut(s)	36
Bme1390I	CCNGG	1 cut(s)	283
Bme18I	GGWCC	1 cut(s)	778
BmgT120I	GGNCC	1 cut(s)	778
BmiI	GGNNCC	2 cut(s)	287, 581
BmrFI	CCNGG	1 cut(s)	283
BpiI	GAAGAC	1 cut(s)	352
BpmI	CTGGAG	1 cut(s)	917
BpuMI	CCSGG	1 cut(s)	283
BsaJI	CCNNGG	2 cut(s)	630, 861
BsaXI	ACNNNNNCTCC	2 cut(s)	474, 504
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 834
Bse1I	ACTGG	3 cut(s)	29, 47, 900
Bse3DI	GCAATG	1 cut(s)	568
BseDI	CCNNGG	2 cut(s)	630, 861
BseGI	GGATG	2 cut(s)	846, 874
BseLI	CCNNNNNNNGG	2 cut(s)	155, 834
BseMI	GCAATG	1 cut(s)	568
BseMII	CTCAG	1 cut(s)	486
BseNI	ACTGG	3 cut(s)	29, 47, 900
BseRI	GAGGAG	1 cut(s)	495
BseSI	GKGCMC	1 cut(s)	82
BsgI	GTGCAG	1 cut(s)	67
BshFI	GGCC	1 cut(s)	601
BsiSI	CCGG	1 cut(s)	282
BslFI	GGGAC	1 cut(s)	823
BslI	CCNNNNNNNGG	2 cut(s)	155, 834
BsmAI	GTCTC	1 cut(s)	180
BsmFI	GGGAC	1 cut(s)	823
BsmI	GAATGC	1 cut(s)	126
BsnI	GGCC	1 cut(s)	601
Bsp1286I	GDGCHC	2 cut(s)	82, 651
Bsp143I	GATC	2 cut(s)	260, 852
BspACI	CCGC	1 cut(s)	962
BspANI	GGCC	1 cut(s)	601
BspCNI	CTCAG	1 cut(s)	487
BspHI	TCATGA	1 cut(s)	555
BspLI	GGNNCC	2 cut(s)	287, 581
BspMAI	CTGCAG	1 cut(s)	40
BspPI	GGATC	1 cut(s)	268
BspQI	GCTCTTC	1 cut(s)	405
BsrDI	GCAATG	1 cut(s)	568
BsrI	ACTGG	3 cut(s)	29, 47, 900
BssECI	CCNNGG	2 cut(s)	630, 861
BssMI	GATC	2 cut(s)	260, 852
BssT1I	CCWWGG	2 cut(s)	630, 861
Bst4CI	ACNGT	2 cut(s)	341, 472
Bst6I	CTCTTC	2 cut(s)	132, 405
BstC8I	GCNNGC	3 cut(s)	50, 54, 58
BstDEI	CTNAG	5 cut(s)	9, 301, 449, 495, 718
BstF5I	GGATG	2 cut(s)	846, 874
BstKTI	GATC	2 cut(s)	263, 855
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	2 cut(s)	260, 852
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 968
BstSCI	CCNGG	1 cut(s)	281
BstSFI	CTRYAG	1 cut(s)	36
BstSLI	GKGCMC	1 cut(s)	82
BstV2I	GAAGAC	1 cut(s)	352
BsuRI	GGCC	1 cut(s)	601
BtsCI	GGATG	2 cut(s)	846, 874
BtsIMutI	CAGTG	1 cut(s)	36
Cac8I	GCNNGC	3 cut(s)	50, 54, 58
CaiI	CAGNNNCTG	1 cut(s)	35
CciI	TCATGA	1 cut(s)	555
Cfr13I	GGNCC	1 cut(s)	778
Csp6I	GTAC	3 cut(s)	22, 333, 820
CspCI	CAANNNNNGTGG	2 cut(s)	846, 881
CviAII	CATG	3 cut(s)	355, 556, 733
CviQI	GTAC	3 cut(s)	22, 333, 820
DdeI	CTNAG	5 cut(s)	9, 301, 449, 495, 718
DpnI	GATC	2 cut(s)	262, 854
DpnII	GATC	2 cut(s)	260, 852
DraI	TTTAAA	1 cut(s)	841
Eam1104I	CTCTTC	2 cut(s)	132, 405
EarI	CTCTTC	2 cut(s)	132, 405
Eco130I	CCWWGG	2 cut(s)	630, 861
Eco24I	GRGCYC	1 cut(s)	651
Eco47I	GGWCC	1 cut(s)	778
EcoRI	GAATTC	1 cut(s)	537
EcoT14I	CCWWGG	2 cut(s)	630, 861
EcoT38I	GRGCYC	1 cut(s)	651
ErhI	CCWWGG	2 cut(s)	630, 861
FaeI	CATG	3 cut(s)	358, 559, 736
FaqI	GGGAC	1 cut(s)	823
FatI	CATG	3 cut(s)	354, 555, 732
FokI	GGATG	2 cut(s)	833, 881
FriOI	GRGCYC	1 cut(s)	651
FspBI	CTAG	5 cut(s)	62, 150, 572, 642, 959
GsuI	CTGGAG	1 cut(s)	917
HaeIII	GGCC	1 cut(s)	601
HapII	CCGG	1 cut(s)	282
Hin1II	CATG	3 cut(s)	358, 559, 736
HindIII	AAGCTT	2 cut(s)	54, 764
HinfI	GANTC	6 cut(s)	5, 358, 435, 725, 784, 801
HpaII	CCGG	1 cut(s)	282
HphI	GGTGA	1 cut(s)	207
Hpy166II	GTNNAC	2 cut(s)	24, 874
Hpy188I	TCNGA	5 cut(s)	10, 95, 132, 496, 806
Hpy188III	TCNNGA	3 cut(s)	225, 556, 850
Hpy8I	GTNNAC	2 cut(s)	24, 874
HpyCH4III	ACNGT	2 cut(s)	341, 472
HpyCH4IV	ACGT	1 cut(s)	822
HpyCH4V	TGCA	5 cut(s)	38, 48, 237, 532, 912
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 968
HpyF3I	CTNAG	5 cut(s)	9, 301, 449, 495, 718
HpySE526I	ACGT	1 cut(s)	822
Hsp92II	CATG	3 cut(s)	358, 559, 736
Kzo9I	GATC	2 cut(s)	260, 852
LguI	GCTCTTC	1 cut(s)	405
LmnI	GCTCC	1 cut(s)	284
LpnPI	CCDG	8 cut(s)	28, 34, 42, 295, 315, 404, 794, 881
MaeI	CTAG	5 cut(s)	62, 150, 572, 642, 959
MaeII	ACGT	1 cut(s)	822
MaeIII	GTNAC	2 cut(s)	31, 891
MalI	GATC	2 cut(s)	262, 854
MboI	GATC	2 cut(s)	260, 852
MboII	GAAGA	4 cut(s)	119, 357, 422, 455
MhlI	GDGCHC	2 cut(s)	82, 651
MluCI	AATT	6 cut(s)	88, 177, 190, 537, 604, 741
MlyI	GAGTC	2 cut(s)	719, 778
MmeI	TCCRAC	1 cut(s)	238
MnlI	CCTC	8 cut(s)	135, 308, 473, 593, 638, 714, 800, 925
MseI	TTAA	3 cut(s)	113, 699, 840
MslI	CAYNNNNRTG	1 cut(s)	29
MspI	CCGG	1 cut(s)	282
MspR9I	CCNGG	1 cut(s)	283
Mva1269I	GAATGC	1 cut(s)	126
MwoI	GCNNNNNNNGC	2 cut(s)	62, 968
NciI	CCSGG	1 cut(s)	283
NdeII	GATC	2 cut(s)	260, 852
NlaIII	CATG	3 cut(s)	358, 559, 736
NlaIV	GGNNCC	2 cut(s)	287, 581
NmuCI	GTSAC	1 cut(s)	31
OliI	CACNNNNGTG	1 cut(s)	29
PagI	TCATGA	1 cut(s)	555
PciSI	GCTCTTC	1 cut(s)	405
PcsI	WCGNNNNNNNCGW	1 cut(s)	828
PctI	GAATGC	1 cut(s)	126
PfeI	GAWTC	4 cut(s)	5, 358, 435, 801
PleI	GAGTC	2 cut(s)	719, 778
PpsI	GAGTC	2 cut(s)	719, 778
PspN4I	GGNNCC	2 cut(s)	287, 581
PspPI	GGNCC	1 cut(s)	778
PstI	CTGCAG	1 cut(s)	40
PstNI	CAGNNNCTG	1 cut(s)	35
RsaI	GTAC	3 cut(s)	23, 334, 821
RsaNI	GTAC	3 cut(s)	22, 333, 820
RseI	CAYNNNNRTG	1 cut(s)	29
SapI	GCTCTTC	1 cut(s)	405
SaqAI	TTAA	3 cut(s)	113, 699, 840
Sau3AI	GATC	2 cut(s)	260, 852
Sau96I	GGNCC	1 cut(s)	778
SchI	GAGTC	2 cut(s)	719, 778
ScrFI	CCNGG	1 cut(s)	283
SduI	GDGCHC	2 cut(s)	82, 651
SfcI	CTRYAG	1 cut(s)	36
SinI	GGWCC	1 cut(s)	778
SmiMI	CAYNNNNRTG	1 cut(s)	29
Sse9I	AATT	6 cut(s)	88, 177, 190, 537, 604, 741
SsiI	CCGC	1 cut(s)	962
SspI	AATATT	1 cut(s)	712
SspMI	CTAG	5 cut(s)	62, 150, 572, 642, 959
StyD4I	CCNGG	1 cut(s)	281
StyI	CCWWGG	2 cut(s)	630, 861
TaaI	ACNGT	2 cut(s)	341, 472
TaiI	ACGT	1 cut(s)	825
TaqI	TCGA	1 cut(s)	747
TasI	AATT	6 cut(s)	88, 177, 190, 537, 604, 741
TatI	WGTACW	1 cut(s)	21
TfiI	GAWTC	4 cut(s)	5, 358, 435, 801
Tru1I	TTAA	3 cut(s)	113, 699, 840
Tru9I	TTAA	3 cut(s)	113, 699, 840
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	31
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	6 cut(s)	391, 401, 423, 544, 721, 957
TspGWI	ACGGA	1 cut(s)	791
TspRI	CASTG	1 cut(s)	36
VpaK11BI	GGWCC	1 cut(s)	778
XapI	RAATTY	2 cut(s)	537, 741
XspI	CTAG	5 cut(s)	62, 150, 572, 642, 959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.