Rroxscaffold_1G00003770

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
4861676 .. 4877055
15380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00003770.1

Sequence Viewer

Length: 1128 bp
ATGTTAGAGTTTGTTCTGGATCACGAATTTGATGCCTTGGAAGGTGAAATGAAGCTGGAGGAGACTGTCATGATTGCTCTTTGGTGTATTCAAGAAGATCCATCTCTTCAACCCACGATGAGGAAGGTTGTGCAGATGCTTGAAGGATTAGTGGAAGTACATGTTCCACCTTGCCCATCCCCATATAACAGAACTATAGTATGGTCAGCCAATCGCAATAATCCCTTGCAAGAAGGATCGAAAGTTGAATTCTCTTTACAAGGCAAGTTTACTCTCACTGATATTAGAACAGGCGAACCAACAAACATTGCTGATGGTTGGTCTACGTTTACTGGAGTTGCCTATGCAGCCATGCTGGACACGGGAAATTTCGTTCTGGCAGCCCGAAATTCAACCTATTTGTGCAATTATGGAATATACGGTGGTGGTGCATGTGAGTTTAACGACTTATGTAGACATGATAAGGATGCAGCTCATACTAATTGCTCCTGCCCTCCTAGTTACATCCACATTGACCAAGATGATGAGAGGAAACGGTGCAAGCCAAACTTTGTTCCCCAAAGTTGTGATAAAGCCTCATCGAAAACAGACCTCTTTGAATTACAAGAGCTTCCACTCACCGATTGGCACAGGCTTAAGGTATTCGGAGACGACTCAAATCTAAGTCATTCGTCTCCATCACTCAACACGAGATTAAACTCGTTTCTCGTGAATCGACTTAATCCTGTGGTTCAAGGCATGAATCTGAAATGTTTCACTTTCATGGAGCTAAAAGAAGCCACCAACGGATTCAAGGAAGAGCTAGGTTGTGGTGCTTTTGCAACTGTTTTCAAAGGAGTTTTAGCATCTGATAACAGGAAGTTCATTGCTGTAAAAAGATTGAACACTGTGGTCAAACAAAATGATTTGGAATTCAAAGCTGAAGTGAGTGCAATTGGTGGAACAAATCACAGAAATTTAGTCCAACTACTCGGATTTTGTAATGAGGGGCAACACCAGCTTCTTGTGTATGAGTACATTAGCAATGGCTCTCTAGCAACCTTCCTTTTTGGAGAGTCAAGACCAAACTGGAATACAAGAAAAAAAAATTGCCTTAGGAACTGCAAGAGGGCTCTTGTATTTGCATGA

Protein Analysis

375

Amino Acids

42.15

Weight (kDa)

6.03

Isoelectric Point (pI)

35.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 65 - 130 7.1e-06 D-mannose binding lectin
PK_Tyr_Ser-Thr PF07714 264 - 352 8.8e-16 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 265 - 350 1.2e-11 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020403)

Species Orthologous Gene IDs
malus_domestica MD11G1024800.v1.1 MD11G1024900.v1.1
rosa_chinensis RchiOBHm_Chr5g0077611
rosa_laevigata RLG00000001265
rosa_roxburghii Rroxscaffold_1G00003770
rosa_rugosa Rorug07G0280800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 323, 454
AclWI GGATC 3 cut(s) 27, 92, 244
AcsI RAATTY 6 cut(s) 26, 248, 367, 388, 911, 955
AcuI CTGAAG 1 cut(s) 942
AfaI GTAC 2 cut(s) 159, 1016
AfiI CCNNNNNNNGG 1 cut(s) 120
AflII CTTAAG 1 cut(s) 635
AflIII ACRYGT 1 cut(s) 160
AloI GAACNNNNNNTCC 2 cut(s) 357, 389
AluBI AGCT 7 cut(s) 55, 473, 610, 769, 802, 920, 1000
AluI AGCT 7 cut(s) 55, 473, 610, 769, 802, 920, 1000
Alw26I GTCTC 3 cut(s) 56, 642, 678
AlwI GGATC 3 cut(s) 27, 92, 244
ApeKI GCWGC 3 cut(s) 347, 380, 470
ApoI RAATTY 6 cut(s) 26, 248, 367, 388, 911, 955
Asp700I GAANNNNTTC 1 cut(s) 752
AsuHPI GGTGA 2 cut(s) 56, 610
AxyI CCTNAGG 1 cut(s) 1094
BanII GRGCYC 1 cut(s) 1114
BauI CACGAG 2 cut(s) 688, 707
BbvI GCAGC 3 cut(s) 359, 392, 482
BccI CCATC 4 cut(s) 109, 184, 308, 685
BcgI CGANNNNNNTGC 2 cut(s) 14, 48
BcoDI GTCTC 3 cut(s) 56, 642, 678
BfaI CTAG 3 cut(s) 498, 803, 1034
BfmI CTRYAG 1 cut(s) 195
BfrI CTTAAG 1 cut(s) 635
BisI GCNGC 3 cut(s) 348, 381, 471
BlsI GCNGC 3 cut(s) 349, 382, 472
BmsI GCATC 4 cut(s) 22, 126, 457, 854
BpmI CTGGAG 2 cut(s) 77, 354
BsaJI CCNNGG 1 cut(s) 36
Bsc4I CCNNNNNNNGG 1 cut(s) 120
Bse1I ACTGG 2 cut(s) 337, 1073
Bse21I CCTNAGG 1 cut(s) 1094
Bse3DI GCAATG 3 cut(s) 306, 864, 1030
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 3 cut(s) 176, 472, 504
BseLI CCNNNNNNNGG 1 cut(s) 120
BseMI GCAATG 3 cut(s) 306, 864, 1030
BseNI ACTGG 2 cut(s) 337, 1073
BseRI GAGGAG 1 cut(s) 74
BseXI GCAGC 3 cut(s) 359, 392, 482
BsgI GTGCAG 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 120
BsmAI GTCTC 3 cut(s) 56, 642, 678
BsmBI CGTCTC 2 cut(s) 642, 678
Bsp1286I GDGCHC 1 cut(s) 1114
Bsp143I GATC 3 cut(s) 19, 97, 236
BspHI TCATGA 1 cut(s) 69
BspPI GGATC 3 cut(s) 27, 92, 244
BspQI GCTCTTC 1 cut(s) 792
BspTI CTTAAG 1 cut(s) 635
BsrDI GCAATG 3 cut(s) 306, 864, 1030
BsrI ACTGG 2 cut(s) 337, 1073
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 3 cut(s) 19, 97, 236
BssSI CACGAG 2 cut(s) 688, 707
BssT1I CCWWGG 1 cut(s) 36
Bst2BI CACGAG 2 cut(s) 688, 707
Bst4CI ACNGT 5 cut(s) 67, 422, 537, 826, 889
Bst6I CTCTTC 2 cut(s) 111, 792
BstAFI CTTAAG 1 cut(s) 635
BstC8I GCNNGC 1 cut(s) 542
BstDEI CTNAG 2 cut(s) 662, 1094
BstF5I GGATG 3 cut(s) 176, 472, 504
BstKTI GATC 3 cut(s) 22, 100, 239
BstMAI GTCTC 3 cut(s) 56, 642, 678
BstMBI GATC 3 cut(s) 19, 97, 236
BstMWI GCNNNNNNNGC 2 cut(s) 347, 997
BstNSI RCATGY 2 cut(s) 164, 435
BstSFI CTRYAG 1 cut(s) 195
BstV1I GCAGC 3 cut(s) 359, 392, 482
BstX2I RGATCY 1 cut(s) 97
BstYI RGATCY 1 cut(s) 97
Bsu36I CCTNAGG 1 cut(s) 1094
BtsCI GGATG 3 cut(s) 176, 472, 504
BtsIMutI CAGTG 2 cut(s) 276, 885
Cac8I GCNNGC 1 cut(s) 542
CciI TCATGA 1 cut(s) 69
Csp6I GTAC 2 cut(s) 158, 1015
CviAII CATG 8 cut(s) 70, 161, 352, 432, 458, 739, 763, 1125
CviQI GTAC 2 cut(s) 158, 1015
DdeI CTNAG 2 cut(s) 662, 1094
DpnI GATC 3 cut(s) 21, 99, 238
DpnII GATC 3 cut(s) 19, 97, 236
Eam1104I CTCTTC 2 cut(s) 111, 792
EarI CTCTTC 2 cut(s) 111, 792
Eco130I CCWWGG 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 1114
Eco57I CTGAAG 1 cut(s) 942
Eco81I CCTNAGG 1 cut(s) 1094
EcoRI GAATTC 2 cut(s) 248, 911
EcoT14I CCWWGG 1 cut(s) 36
EcoT38I GRGCYC 1 cut(s) 1114
ErhI CCWWGG 1 cut(s) 36
Esp3I CGTCTC 2 cut(s) 642, 678
FaeI CATG 8 cut(s) 73, 164, 355, 435, 461, 742, 766, 1128
FalI AAGNNNNNCTT 2 cut(s) 533, 565
FatI CATG 8 cut(s) 69, 160, 351, 431, 457, 738, 762, 1124
FblI GTMKAC 2 cut(s) 323, 454
Fnu4HI GCNGC 3 cut(s) 348, 381, 471
FokI GGATG 3 cut(s) 163, 479, 491
FriOI GRGCYC 1 cut(s) 1114
Fsp4HI GCNGC 3 cut(s) 348, 381, 471
FspBI CTAG 3 cut(s) 498, 803, 1034
GluI GCNGC 3 cut(s) 348, 381, 471
GsuI CTGGAG 2 cut(s) 77, 354
Hin1II CATG 8 cut(s) 73, 164, 355, 435, 461, 742, 766, 1128
HinfI GANTC 5 cut(s) 653, 712, 742, 789, 1055
HphI GGTGA 2 cut(s) 56, 610
Hpy166II GTNNAC 4 cut(s) 270, 324, 330, 455
Hpy188I TCNGA 4 cut(s) 647, 747, 850, 974
Hpy188III TCNNGA 6 cut(s) 17, 23, 70, 92, 709, 1059
Hpy8I GTNNAC 4 cut(s) 270, 324, 330, 455
HpyAV CCTTC 5 cut(s) 35, 118, 137, 227, 1051
HpyCH4III ACNGT 5 cut(s) 67, 422, 537, 826, 889
HpyCH4IV ACGT 1 cut(s) 326
HpyF10VI GCNNNNNNNGC 2 cut(s) 347, 997
HpyF3I CTNAG 2 cut(s) 662, 1094
HpySE526I ACGT 1 cut(s) 326
Hsp92II CATG 8 cut(s) 73, 164, 355, 435, 461, 742, 766, 1128
Kzo9I GATC 3 cut(s) 19, 97, 236
LguI GCTCTTC 1 cut(s) 792
LmnI GCTCC 2 cut(s) 491, 766
Lsp1109I GCAGC 3 cut(s) 359, 392, 482
LweI GCATC 4 cut(s) 22, 126, 457, 854
MaeI CTAG 3 cut(s) 498, 803, 1034
MaeII ACGT 1 cut(s) 326
MaeIII GTNAC 1 cut(s) 500
MalI GATC 3 cut(s) 21, 99, 238
MboI GATC 3 cut(s) 19, 97, 236
MboII GAAGA 3 cut(s) 98, 107, 809
MfeI CAATTG 1 cut(s) 933
MflI RGATCY 1 cut(s) 97
MhlI GDGCHC 1 cut(s) 1114
MlyI GAGTC 2 cut(s) 647, 1064
MmeI TCCRAC 1 cut(s) 988
MnlI CCTC 8 cut(s) 52, 114, 504, 522, 586, 602, 979, 1101
MroXI GAANNNNTTC 1 cut(s) 752
MseI TTAA 4 cut(s) 441, 636, 695, 720
MslI CAYNNNNRTG 1 cut(s) 761
MspCI CTTAAG 1 cut(s) 635
MunI CAATTG 1 cut(s) 933
MwoI GCNNNNNNNGC 2 cut(s) 347, 997
NdeII GATC 3 cut(s) 19, 97, 236
NlaIII CATG 8 cut(s) 73, 164, 355, 435, 461, 742, 766, 1128
NspI RCATGY 2 cut(s) 164, 435
PagI TCATGA 1 cut(s) 69
PciI ACATGT 1 cut(s) 160
PciSI GCTCTTC 1 cut(s) 792
PdmI GAANNNNTTC 1 cut(s) 752
PfeI GAWTC 3 cut(s) 712, 742, 789
PkrI GCNGC 3 cut(s) 349, 382, 472
PleI GAGTC 2 cut(s) 647, 1063
PpsI GAGTC 2 cut(s) 647, 1063
PscI ACATGT 1 cut(s) 160
PsuI RGATCY 1 cut(s) 97
RsaI GTAC 2 cut(s) 159, 1016
RsaNI GTAC 2 cut(s) 158, 1015
RseI CAYNNNNRTG 1 cut(s) 761
SapI GCTCTTC 1 cut(s) 792
SaqAI TTAA 4 cut(s) 441, 636, 695, 720
SatI GCNGC 3 cut(s) 348, 381, 471
Sau3AI GATC 3 cut(s) 19, 97, 236
SchI GAGTC 2 cut(s) 647, 1064
SduI GDGCHC 1 cut(s) 1114
SfaNI GCATC 4 cut(s) 22, 126, 457, 854
SfcI CTRYAG 1 cut(s) 195
SmiMI CAYNNNNRTG 1 cut(s) 761
SmlI CTYRAG 1 cut(s) 635
SmoI CTYRAG 1 cut(s) 635
SspMI CTAG 3 cut(s) 498, 803, 1034
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 5 cut(s) 67, 422, 537, 826, 889
TaiI ACGT 1 cut(s) 329
TaqI TCGA 3 cut(s) 239, 581, 715
TatI WGTACW 2 cut(s) 157, 1014
TfiI GAWTC 3 cut(s) 712, 742, 789
Tru1I TTAA 4 cut(s) 441, 636, 695, 720
Tru9I TTAA 4 cut(s) 441, 636, 695, 720
TscAI CASTG 2 cut(s) 283, 892
TseI GCWGC 3 cut(s) 347, 380, 470
TspDTI ATGAA 4 cut(s) 65, 751, 755, 853
TspGWI ACGGA 1 cut(s) 801
TspRI CASTG 2 cut(s) 283, 892
Vha464I CTTAAG 1 cut(s) 635
XapI RAATTY 6 cut(s) 26, 248, 367, 388, 911, 955
XceI RCATGY 2 cut(s) 164, 435
XcmI CCANNNNNNNNNTGG 1 cut(s) 621
XmiI GTMKAC 2 cut(s) 323, 454
XmnI GAANNNNTTC 1 cut(s) 752
XspI CTAG 3 cut(s) 498, 803, 1034
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.