MD11G1028800.v1.1

AP2-like ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
2541395 .. 2544514
3120 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1028800.v1.1.491

Sequence Viewer

Length: 1665 bp
ATGGGGTCAATGAATTCAAACAACTGGCTTTCCTTTCCTCTTTCTCCTACTAATTCTTCCTTGCCATCACAACTCCACCCTTCTCATTCTCATCAGTTCTCTCTAGGGTTAGTAAGTGATACCATGGATTTCCAAAACCAAGGTAATTCTTCTTTCTTTCCATGCATATTTTTTTGGCATTTGATTAATACTCAAGGAAGCGACGAAGTTCCAAAGGTGGCTGATTTTCTTGGCGTGAGCAAATCCGAGAACCACTCAGATCTTGTAGCCTTCAACGATATTCAGGCCAATGATTCTGTCTCCGACTACTTATTCCCGAGCAACAACATAGTCTCTGTACAAAACACCGTTGTAGACAATTCTAGCAACTTTGATTTCCAAGAAAAATCCAACAGCCTCCAATCGTTGACTCTCTCAATGGGAAGTGGCAAGGGTTCTTCAGCATGTGAAACCAGCACCGATAATACCAGCGTTACCACTGTGGAAGCTCCCCCAAGGAGGACTTTGGACACATTCGGACAAAGAACGTCTATTTATCGTGGTGTAACAAGGCATAGGTGGACAGGAAGGTATGAAGCTCATCTTTGGGATAATAGTTGCAGAAGGGAAGGACAATCCAGGAAGGGCCGCCAAGGTGGGTATGACAAAGAAGAGAAAGCAGCTAGGGCTTATGACTTGGCTGCACTAAAGTATTGGGGAACATCTACAACTACAAATTTTCCAATCAGTAACTATGAGAAGGAGGTGGAGGAGATGAAGAACATGACAAGACAAGAATTTGTGGCAGCCATTAGAAGGAAAAGCAGTGGCTTTTCTAGGGGAGCGTCCATGTATCGTGGAGTTACAAGGCATCACCAACACGGACGATGGCAAGCAAGGATTGGCAGAGTTGCCGGAAACAAAGATCTATACTTGGGAACTTTCAGTACTGAGGAGGAGGCAGCTGAAGCTTACGACATAGCAGCAATAAAATTCCGAGGCCTAAACGCCGTAACCAACTTCGACATGAGTCGATACGACGTGAAGAGCATTTTGGAGAGCAATACTCTCCCCATAGGAGGAGGGGCAGCAAAGCGTCTCAAAGAGGCTCAAGCATTGGAATCTTCCAGAAAACGTGAAGAAATGATAGCTCTCGGCTCCACCTTTCAGTATGCGGCTGCAGGAGCCGCCAGTTCATCAACATCAGCCAGTCGTAATTTTCAAGCCTACTCTTTGTTGCAGCCTCAGTCAACCCTTGATCAAAATGTACAACAATCCCAGCCTCTACTAACTCTCCAAAACCATGATATTTCTCAGTACATCCACCATCATGACCCTTCTTCATACCAAAATTACATTCAAACCCAGCTTCAGTTGCACCAGACCCAGCAGCAATACCATCCTACCCAGCAATTCTATAATAGTTATGGACTTCAGAGTACACACCCAGCTTTGCTTCAAGGTCTCATGGACATGGGTTCTTCTTCTGGCGTGATGGATCACAACAGTGGAAGCTCTAGTGGGAGCTATAGTGCTGGAGGGTATTTAGGGAATATTGGAATTGGGTTGGCTTCAAATTCAACAGTAAACAATGGAGTGGGTTCAGCAGAAGAGCTCGCACTTGTGAAGGTTGATTATGATATGCCTAATGGAGGAGGGTATGGGTATTTTTACAATGTGGAATGA

Protein Analysis

555

Amino Acids

61.14

Weight (kDa)

6.23

Isoelectric Point (pI)

46.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 179 - 233 1.4e-07 AP2 domain
AP2 PF00847 278 - 327 7.6e-09 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 354
AciI CCGC 3 cut(s) 628, 1154, 1167
AclWI GGATC 1 cut(s) 1485
AcsI RAATTY 5 cut(s) 13, 715, 776, 971, 1555
AcuI CTGAAG 4 cut(s) 423, 966, 1334, 1397
AfaI GTAC 5 cut(s) 339, 928, 1248, 1298, 1420
AfiI CCNNNNNNNGG 4 cut(s) 498, 795, 1058, 1631
AgsI TTSAA 7 cut(s) 18, 274, 1202, 1340, 1439, 1554, 1560
AjiI CACGTC 1 cut(s) 1021
AjnI CCWGG 1 cut(s) 617
AjuI GAANNNNNNNTTGG 4 cut(s) 1016, 1048, 1320, 1352
AleI CACNNNNGTG 1 cut(s) 1485
Alw21I GWGCWC 1 cut(s) 1596
Alw26I GTCTC 4 cut(s) 304, 337, 1082, 1448
AlwI GGATC 1 cut(s) 1485
Ama87I CYCGRG 1 cut(s) 316
AoxI GGCC 3 cut(s) 285, 625, 979
ApeKI GCWGC 9 cut(s) 659, 680, 785, 941, 962, 1067, 1157, 1219, 1369
ApoI RAATTY 5 cut(s) 13, 715, 776, 971, 1555
AseI ATTAAT 1 cut(s) 186
AspS9I GGNCC 1 cut(s) 625
AsuHPI GGTGA 1 cut(s) 845
AvaI CYCGRG 1 cut(s) 316
BanII GRGCYC 1 cut(s) 1596
Bbv12I GWGCWC 1 cut(s) 1596
BbvI GCAGC 9 cut(s) 667, 671, 797, 953, 974, 1079, 1144, 1231, 1381
BccI CCATC 5 cut(s) 73, 861, 1314, 1386, 1468
BceAI ACGGC 1 cut(s) 974
BciT130I CCWGG 1 cut(s) 619
BclI TGATCA 1 cut(s) 1237
BcoDI GTCTC 4 cut(s) 304, 337, 1082, 1448
BfaI CTAG 5 cut(s) 104, 363, 663, 816, 1497
BfmI CTRYAG 2 cut(s) 1158, 1507
BglII AGATCT 2 cut(s) 259, 904
BmcAI AGTACT 1 cut(s) 928
Bme1390I CCNGG 1 cut(s) 619
BmeT110I CYCGRG 1 cut(s) 316
BmgBI CACGTC 1 cut(s) 1021
BmgT120I GGNCC 1 cut(s) 625
BmiI GGNNCC 2 cut(s) 1138, 1165
BmrFI CCNGG 1 cut(s) 619
BmsI GCATC 1 cut(s) 859
BoxI GACNNNNGTC 1 cut(s) 1008
BplI GAGNNNNNCTC 4 cut(s) 239, 271, 1030, 1062
BpmI CTGGAG 1 cut(s) 1536
BpuEI CTTGAG 2 cut(s) 177, 1074
BsaI GGTCTC 1 cut(s) 1448
BsaJI CCNNGG 5 cut(s) 123, 139, 494, 631, 976
BsaXI ACNNNNNCTCC 4 cut(s) 1257, 1287, 1495, 1525
Bsc4I CCNNNNNNNGG 4 cut(s) 498, 795, 1058, 1631
Bse1I ACTGG 3 cut(s) 29, 1170, 1188
BseBI CCWGG 1 cut(s) 619
BseDI CCNNGG 5 cut(s) 123, 139, 494, 631, 976
BseGI GGATG 2 cut(s) 1299, 1378
BseLI CCNNNNNNNGG 4 cut(s) 498, 795, 1058, 1631
BseMII CTCAG 4 cut(s) 270, 921, 1238, 1307
BseNI ACTGG 3 cut(s) 29, 1170, 1188
BseRI GAGGAG 5 cut(s) 764, 947, 950, 1074, 1647
BseXI GCAGC 9 cut(s) 667, 671, 797, 953, 974, 1079, 1144, 1231, 1381
BseYI CCCAGC 5 cut(s) 1257, 1344, 1365, 1386, 1426
BsgI GTGCAG 1 cut(s) 666
BshFI GGCC 3 cut(s) 287, 627, 981
BsiHKAI GWGCWC 1 cut(s) 1596
BsiHKCI CYCGRG 1 cut(s) 316
BsiSI CCGG 1 cut(s) 894
BslI CCNNNNNNNGG 4 cut(s) 498, 795, 1058, 1631
BsmAI GTCTC 4 cut(s) 304, 337, 1082, 1448
BsmBI CGTCTC 1 cut(s) 1082
BsnI GGCC 3 cut(s) 287, 627, 981
Bso31I GGTCTC 1 cut(s) 1448
BsoBI CYCGRG 1 cut(s) 316
Bsp1286I GDGCHC 1 cut(s) 1596
Bsp1407I TGTACA 2 cut(s) 337, 1246
Bsp143I GATC 4 cut(s) 259, 904, 1237, 1477
Bsp19I CCATGG 1 cut(s) 123
BspACI CCGC 3 cut(s) 628, 1154, 1167
BspANI GGCC 3 cut(s) 287, 627, 981
BspCNI CTCAG 4 cut(s) 269, 922, 1237, 1306
BspHI TCATGA 1 cut(s) 1309
BspLI GGNNCC 2 cut(s) 1138, 1165
BspMAI CTGCAG 1 cut(s) 1162
BspPI GGATC 1 cut(s) 1485
BspQI GCTCTTC 2 cut(s) 1019, 1584
BspTNI GGTCTC 1 cut(s) 1448
BsrGI TGTACA 2 cut(s) 337, 1246
BsrI ACTGG 3 cut(s) 29, 1170, 1188
BssECI CCNNGG 5 cut(s) 123, 139, 494, 631, 976
BssMI GATC 4 cut(s) 259, 904, 1237, 1477
BssT1I CCWWGG 4 cut(s) 123, 139, 494, 631
Bst2UI CCWGG 1 cut(s) 619
Bst4CI ACNGT 4 cut(s) 349, 481, 1487, 1564
Bst6I CTCTTC 3 cut(s) 645, 1019, 1584
BstAUI TGTACA 2 cut(s) 337, 1246
BstC8I GCNNGC 2 cut(s) 873, 1596
BstDEI CTNAG 4 cut(s) 256, 930, 1224, 1293
BstDSI CCRYGG 1 cut(s) 123
BstENI CCTNNNNNAGG 1 cut(s) 1629
BstF5I GGATG 2 cut(s) 1299, 1378
BstKTI GATC 4 cut(s) 262, 907, 1240, 1480
BstMAI GTCTC 4 cut(s) 304, 337, 1082, 1448
BstMBI GATC 4 cut(s) 259, 904, 1237, 1477
BstMWI GCNNNNNNNGC 5 cut(s) 665, 947, 1163, 1166, 1354
BstNI CCWGG 1 cut(s) 619
BstNSI RCATGY 1 cut(s) 447
BstPAI GACNNNNGTC 1 cut(s) 1008
BstSCI CCNGG 1 cut(s) 617
BstSFI CTRYAG 2 cut(s) 1158, 1507
BstV1I GCAGC 9 cut(s) 667, 671, 797, 953, 974, 1079, 1144, 1231, 1381
BstX2I RGATCY 2 cut(s) 259, 904
BstYI RGATCY 2 cut(s) 259, 904
BsuRI GGCC 3 cut(s) 287, 627, 981
BtgI CCRYGG 1 cut(s) 123
BtrI CACGTC 1 cut(s) 1021
BtsCI GGATG 2 cut(s) 1299, 1378
BtsI GCAGTG 1 cut(s) 811
BtsIMutI CAGTG 3 cut(s) 477, 811, 1492
Cac8I GCNNGC 2 cut(s) 873, 1596
CciI TCATGA 1 cut(s) 1309
Cfr13I GGNCC 1 cut(s) 625
CseI GACGC 2 cut(s) 813, 1064
Csp6I GTAC 5 cut(s) 338, 927, 1247, 1297, 1419
CviQI GTAC 5 cut(s) 338, 927, 1247, 1297, 1419
DdeI CTNAG 4 cut(s) 256, 930, 1224, 1293
DpnI GATC 4 cut(s) 261, 906, 1239, 1479
DpnII GATC 4 cut(s) 259, 904, 1237, 1477
Eam1104I CTCTTC 3 cut(s) 645, 1019, 1584
EarI CTCTTC 3 cut(s) 645, 1019, 1584
Ecl136II GAGCTC 1 cut(s) 1594
Eco130I CCWWGG 4 cut(s) 123, 139, 494, 631
Eco147I AGGCCT 1 cut(s) 981
Eco24I GRGCYC 1 cut(s) 1596
Eco31I GGTCTC 1 cut(s) 1448
Eco53kI GAGCTC 1 cut(s) 1594
Eco57I CTGAAG 4 cut(s) 423, 966, 1334, 1397
Eco88I CYCGRG 1 cut(s) 316
EcoICRI GAGCTC 1 cut(s) 1594
EcoNI CCTNNNNNAGG 1 cut(s) 1629
EcoRI GAATTC 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 617
EcoT14I CCWWGG 4 cut(s) 123, 139, 494, 631
EcoT22I ATGCAT 1 cut(s) 167
EcoT38I GRGCYC 1 cut(s) 1596
ErhI CCWWGG 4 cut(s) 123, 139, 494, 631
Esp3I CGTCTC 1 cut(s) 1082
FalI AAGNNNNNCTT 4 cut(s) 487, 519, 567, 599
FbaI TGATCA 1 cut(s) 1237
FblI GTMKAC 1 cut(s) 354
FokI GGATG 2 cut(s) 1286, 1365
FriOI GRGCYC 1 cut(s) 1596
FspBI CTAG 5 cut(s) 104, 363, 663, 816, 1497
GsaI CCCAGC 5 cut(s) 1261, 1348, 1369, 1390, 1430
GsuI CTGGAG 1 cut(s) 1536
HaeIII GGCC 3 cut(s) 287, 627, 981
HapII CCGG 1 cut(s) 894
HgaI GACGC 2 cut(s) 813, 1064
HincII GTYRAC 2 cut(s) 408, 1230
HindII GTYRAC 2 cut(s) 408, 1230
HindIII AAGCTT 1 cut(s) 948
HinfI GANTC 4 cut(s) 293, 409, 1009, 1100
HpaII CCGG 1 cut(s) 894
HphI GGTGA 1 cut(s) 845
Hpy166II GTNNAC 6 cut(s) 355, 408, 561, 1230, 1421, 1567
Hpy188I TCNGA 6 cut(s) 247, 259, 304, 518, 977, 1416
Hpy188III TCNNGA 3 cut(s) 316, 1107, 1310
Hpy8I GTNNAC 6 cut(s) 355, 408, 561, 1230, 1421, 1567
Hpy99I CGWCG 2 cut(s) 206, 1022
HpyCH4III ACNGT 4 cut(s) 349, 481, 1487, 1564
HpyCH4IV ACGT 3 cut(s) 527, 1020, 1114
HpyCH4V TGCA 6 cut(s) 165, 600, 683, 1160, 1219, 1357
HpyF10VI GCNNNNNNNGC 5 cut(s) 665, 947, 1163, 1166, 1354
HpyF3I CTNAG 4 cut(s) 256, 930, 1224, 1293
HpySE526I ACGT 3 cut(s) 527, 1020, 1114
Ksp22I TGATCA 1 cut(s) 1237
Kzo9I GATC 4 cut(s) 259, 904, 1237, 1477
LguI GCTCTTC 2 cut(s) 1019, 1584
LmnI GCTCC 5 cut(s) 493, 821, 1142, 1163, 1503
Lsp1109I GCAGC 9 cut(s) 667, 671, 797, 953, 974, 1079, 1144, 1231, 1381
LweI GCATC 1 cut(s) 859
MaeI CTAG 5 cut(s) 104, 363, 663, 816, 1497
MaeII ACGT 3 cut(s) 527, 1020, 1114
MaeIII GTNAC 5 cut(s) 472, 544, 728, 841, 991
MalI GATC 4 cut(s) 261, 906, 1239, 1479
MboI GATC 4 cut(s) 259, 904, 1237, 1477
MflI RGATCY 2 cut(s) 259, 904
MhlI GDGCHC 1 cut(s) 1596
MlyI GAGTC 2 cut(s) 403, 1018
MmeI TCCRAC 2 cut(s) 327, 414
Mph1103I ATGCAT 1 cut(s) 167
MseI TTAA 1 cut(s) 186
MslI CAYNNNNRTG 3 cut(s) 1308, 1451, 1485
MspA1I CMGCKG 1 cut(s) 944
MspI CCGG 1 cut(s) 894
MspR9I CCNGG 1 cut(s) 619
MvaI CCWGG 1 cut(s) 619
MwoI GCNNNNNNNGC 5 cut(s) 665, 947, 1163, 1166, 1354
NcoI CCATGG 1 cut(s) 123
NdeII GATC 4 cut(s) 259, 904, 1237, 1477
NlaIV GGNNCC 2 cut(s) 1138, 1165
NmeAIII GCCGAG 1 cut(s) 1113
NsiI ATGCAT 1 cut(s) 167
NspI RCATGY 1 cut(s) 447
OliI CACNNNNGTG 1 cut(s) 1485
PagI TCATGA 1 cut(s) 1309
PceI AGGCCT 1 cut(s) 981
PciSI GCTCTTC 2 cut(s) 1019, 1584
PfeI GAWTC 2 cut(s) 293, 1100
PfoI TCCNGGA 1 cut(s) 617
PleI GAGTC 2 cut(s) 403, 1017
PpsI GAGTC 2 cut(s) 403, 1017
PshAI GACNNNNGTC 1 cut(s) 1008
PshBI ATTAAT 1 cut(s) 186
Psp124BI GAGCTC 1 cut(s) 1596
Psp6I CCWGG 1 cut(s) 617
PspFI CCCAGC 5 cut(s) 1257, 1344, 1365, 1386, 1426
PspGI CCWGG 1 cut(s) 617
PspN4I GGNNCC 2 cut(s) 1138, 1165
PspPI GGNCC 1 cut(s) 625
PsrI GAACNNNNNNTAC 2 cut(s) 910, 942
PstI CTGCAG 1 cut(s) 1162
PsuI RGATCY 2 cut(s) 259, 904
PvuII CAGCTG 1 cut(s) 944
RsaI GTAC 5 cut(s) 339, 928, 1248, 1298, 1420
RsaNI GTAC 5 cut(s) 338, 927, 1247, 1297, 1419
RseI CAYNNNNRTG 3 cut(s) 1308, 1451, 1485
SacI GAGCTC 1 cut(s) 1596
SapI GCTCTTC 2 cut(s) 1019, 1584
SaqAI TTAA 1 cut(s) 186
Sau3AI GATC 4 cut(s) 259, 904, 1237, 1477
Sau96I GGNCC 1 cut(s) 625
ScaI AGTACT 1 cut(s) 928
SchI GAGTC 2 cut(s) 403, 1018
ScrFI CCNGG 1 cut(s) 619
SduI GDGCHC 1 cut(s) 1596
SfaNI GCATC 1 cut(s) 859
SfcI CTRYAG 2 cut(s) 1158, 1507
SmiMI CAYNNNNRTG 3 cut(s) 1308, 1451, 1485
SmlI CTYRAG 2 cut(s) 192, 1089
SmoI CTYRAG 2 cut(s) 192, 1089
SseBI AGGCCT 1 cut(s) 981
SsiI CCGC 3 cut(s) 628, 1154, 1167
SspI AATATT 1 cut(s) 1534
SspMI CTAG 5 cut(s) 104, 363, 663, 816, 1497
SstI GAGCTC 1 cut(s) 1596
StuI AGGCCT 1 cut(s) 981
StyD4I CCNGG 1 cut(s) 617
StyI CCWWGG 4 cut(s) 123, 139, 494, 631
TaaI ACNGT 4 cut(s) 349, 481, 1487, 1564
TaiI ACGT 3 cut(s) 530, 1023, 1117
TaqI TCGA 2 cut(s) 1002, 1012
TatI WGTACW 5 cut(s) 337, 926, 1246, 1296, 1418
TauI GCSGC 3 cut(s) 630, 1157, 1169
TfiI GAWTC 2 cut(s) 293, 1100
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 3 cut(s) 484, 811, 1492
TseI GCWGC 9 cut(s) 659, 680, 785, 941, 962, 1067, 1157, 1219, 1369
TspDTI ATGAA 5 cut(s) 26, 588, 770, 1164, 1311
TspGWI ACGGA 1 cut(s) 876
TspRI CASTG 3 cut(s) 484, 811, 1492
VspI ATTAAT 1 cut(s) 186
XagI CCTNNNNNAGG 1 cut(s) 1629
XapI RAATTY 5 cut(s) 13, 715, 776, 971, 1555
XceI RCATGY 1 cut(s) 447
XmiI GTMKAC 1 cut(s) 354
XspI CTAG 5 cut(s) 104, 363, 663, 816, 1497
ZrmI AGTACT 1 cut(s) 928
Zsp2I ATGCAT 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.