Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000099.1

Orthogroup ID

OG0010676

Physical Location & Seq

Genomic Coordinates Forward (+)

51702 .. 54302

Gene Structure 2601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000099.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

atgggctccatgaattcaaacaactggctctcatttcctctttctcctgctaattcttctttaccatcacaacttcacccatctcactctcatcaattctcgctagggttagtcagtgacagtatggataatcctttccaaaaccacgagtggaatatgattaatacccaagggagcagcgacgttccgaaagtagctgattttctcggtgtgggcaaatctgacaaccagtcagatcttgtggcctacaatgagattaatgctaatgagtccgtcaccgattacatttttccgaacatcaataatgctatagtcccagtgcaaaacgctgtagttggtacatccagcaactacgatttccaggaaaactccaatagcctgcaatctttgactctttccatgggcagtggcaaaggttcttcgacatgtgaaaccagtgccgataataccagtactactactgttgaagctcccccaagaagggctctggacacatttggacaaaggacctctatttatcgtggtgtaacaaggcatagatggaccggaagatatgaagctcatctatgggataatagttgtagaagggagggccaatcaaggaagggccggcaaggtgggtatgacaaggaagagaaagctgctagggcatatgacttggctgcactaaagtactggggaacatccaccactacgaattttccaattagtaactacgagaaggaggtggaggagatgaagaactgtacaagacaggaatttgtggcctccattagaaggaaaagtagtggcttttcaagaggagcatccatgtatcgtggagttacaaggcatcatcagcacggccgatggcaggcaaggataggcagagttgccggaaacaaagacctttacctgggaactttcagtactgaggaagaggcagctgaagcttatgacatagcagcgataaagttccgaggcctgaacgccgtcaccaacttcgacatgagtcgatacgacgtgaagagcattcttgagagcaacactctccccatcgggggcggcgctgcaaagcggctgaaagaggctcaagctttggaaacatctagaaaacgtgaagaaatgatagctctgggctccaccttccaatatgcagccggaagcagctcatcagcgagctcagctgctcgtaatttacaggcatactctttgatgcagcagcaaccacagtcagcatatgatcagactctactttctctacaaaaccatgacatatctcagtacacccaccatgacccctctgcttaccaaaactacgcaatgtctttaccaccaaggggattctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000723 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010449 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0031323 GO:0031326 GO:0032200 GO:0032501 GO:0032502 GO:0034641 GO:0035266 GO:0040007 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098727 GO:0099402 GO:0140110 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

442

Amino Acids

48.97

Weight (kDa)

7.21

Isoelectric Point (pI)

49.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51190 AT3G20840
fragaria_vesca	FvH4_3g43100 FvH4_3g43100
malus_domestica	MD03G1023900.v1.1 MD11G1028800.v1.1
prunus_persica	Prupe.6G023000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0077201
rosa_laevigata	RLG00000036673
rosa_multiflora	Rmu_co8310213.1_g000001 Rmu_sc0000099.1_g000011 Rmu_sc0004844.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004880
rosa_rugosa	Rorug05G0452700
rosa_samantha	Rh5AG507600 Rh5BG529100 Rh5CG553600 Rh5DG541100 Rh5DG541300
rosa_wichuraiana	Rw5G046970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	1044, 1057
AcoI	YGGCCR	1 cut(s)	844
AcsI	RAATTY	3 cut(s)	13, 697, 758
AcuI	CTGAAG	1 cut(s)	948
AfaI	GTAC	6 cut(s)	340, 454, 674, 748, 910, 1265
AfiI	CCNNNNNNNGG	8 cut(s)	480, 481, 777, 853, 895, 1039, 1040, 1319
AflIII	ACRYGT	1 cut(s)	425
AgsI	TTSAA	3 cut(s)	18, 467, 798
AhdI	GACNNNNNGTC	1 cut(s)	229
AjiI	CACGTC	1 cut(s)	1003
AjnI	CCWGG	2 cut(s)	360, 894
Alw21I	GWGCWC	1 cut(s)	1163
AoxI	GGCC	6 cut(s)	243, 592, 607, 765, 844, 961
ApoI	RAATTY	3 cut(s)	13, 697, 758
AseI	ATTAAT	2 cut(s)	162, 258
AspLEI	GCGC	1 cut(s)	1049
AspS9I	GGNCC	4 cut(s)	507, 543, 592, 607
AsuHPI	GGTGA	3 cut(s)	68, 268, 967
AvaII	GGWCC	2 cut(s)	507, 543
BanII	GRGCYC	4 cut(s)	8, 487, 1121, 1163
BauI	CACGAG	1 cut(s)	146
Bbv12I	GWGCWC	1 cut(s)	1163
BccI	CCATC	5 cut(s)	73, 88, 534, 843, 1043
BceAI	ACGGC	2 cut(s)	859, 956
BciT130I	CCWGG	2 cut(s)	362, 896
BclI	TGATCA	1 cut(s)	1222
BfaI	CTAG	3 cut(s)	104, 645, 1089
BfmI	CTRYAG	2 cut(s)	309, 330
BfoI	RGCGCY	1 cut(s)	1050
BglII	AGATCT	1 cut(s)	235
BlpI	GCTNAGC	1 cut(s)	1162
BmcAI	AGTACT	3 cut(s)	454, 674, 910
Bme1390I	CCNGG	2 cut(s)	362, 896
Bme18I	GGWCC	2 cut(s)	507, 543
BmeRI	GACNNNNNGTC	1 cut(s)	229
BmgBI	CACGTC	1 cut(s)	1003
BmgT120I	GGNCC	4 cut(s)	507, 543, 592, 607
BmiI	GGNNCC	2 cut(s)	7, 1120
BmrFI	CCNGG	2 cut(s)	362, 896
BmrI	ACTGGG	2 cut(s)	311, 685
BmsI	GCATC	3 cut(s)	815, 841, 1185
BmuI	ACTGGG	2 cut(s)	311, 685
BoxI	GACNNNNGTC	1 cut(s)	990
BplI	GAGNNNNNCTC	2 cut(s)	1012, 1044
Bpu1102I	GCTNAGC	1 cut(s)	1162
BpuEI	CTTGAG	2 cut(s)	1037, 1056
BsaJI	CCNNGG	5 cut(s)	169, 399, 895, 958, 1316
BsaWI	WCCGGW	1 cut(s)	545
Bsc4I	CCNNNNNNNGG	8 cut(s)	480, 481, 777, 853, 895, 1039, 1040, 1319
Bse118I	RCCGGY	1 cut(s)	609
Bse1I	ACTGG	6 cut(s)	29, 229, 317, 435, 450, 680
Bse3DI	GCAATG	1 cut(s)	1308
BseBI	CCWGG	2 cut(s)	362, 896
BseDI	CCNNGG	5 cut(s)	169, 399, 895, 958, 1316
BseGI	GGATG	3 cut(s)	341, 683, 806
BseLI	CCNNNNNNNGG	8 cut(s)	480, 481, 777, 853, 895, 1039, 1040, 1319
BseMI	GCAATG	1 cut(s)	1308
BseMII	CTCAG	3 cut(s)	903, 1176, 1274
BseNI	ACTGG	6 cut(s)	29, 229, 317, 435, 450, 680
BseRI	GAGGAG	2 cut(s)	746, 816
BseX3I	CGGCCG	1 cut(s)	844
BsgI	GTGCAG	1 cut(s)	648
Bsh1285I	CGRYCG	1 cut(s)	847
BshFI	GGCC	6 cut(s)	245, 594, 609, 767, 846, 963
BsiEI	CGRYCG	1 cut(s)	847
BsiHKAI	GWGCWC	1 cut(s)	1163
BsiSI	CCGG	4 cut(s)	546, 610, 876, 1140
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	8 cut(s)	480, 481, 777, 853, 895, 1039, 1040, 1319
BsmFI	GGGAC	1 cut(s)	299
BsmI	GAATGC	1 cut(s)	1011
BsnI	GGCC	6 cut(s)	245, 594, 609, 767, 846, 963
Bsp1286I	GDGCHC	4 cut(s)	8, 487, 1121, 1163
Bsp1407I	TGTACA	1 cut(s)	746
Bsp143I	GATC	2 cut(s)	235, 1222
Bsp1720I	GCTNAGC	1 cut(s)	1162
Bsp19I	CCATGG	1 cut(s)	399
BspACI	CCGC	2 cut(s)	1044, 1057
BspANI	GGCC	6 cut(s)	245, 594, 609, 767, 846, 963
BspCNI	CTCAG	3 cut(s)	904, 1175, 1273
BspLI	GGNNCC	2 cut(s)	7, 1120
BspQI	GCTCTTC	1 cut(s)	1001
BsrDI	GCAATG	1 cut(s)	1308
BsrFI	RCCGGY	1 cut(s)	609
BsrGI	TGTACA	1 cut(s)	746
BsrI	ACTGG	6 cut(s)	29, 229, 317, 435, 450, 680
BssAI	RCCGGY	1 cut(s)	609
BssECI	CCNNGG	5 cut(s)	169, 399, 895, 958, 1316
BssMI	GATC	2 cut(s)	235, 1222
BssSI	CACGAG	1 cut(s)	146
BssT1I	CCWWGG	3 cut(s)	169, 399, 1316
Bst2BI	CACGAG	1 cut(s)	146
Bst2UI	CCWGG	2 cut(s)	362, 896
Bst4CI	ACNGT	4 cut(s)	122, 463, 746, 1212
Bst6I	CTCTTC	3 cut(s)	627, 912, 1001
BstAUI	TGTACA	1 cut(s)	746
BstC8I	GCNNGC	4 cut(s)	380, 611, 855, 1159
BstDEI	CTNAG	3 cut(s)	912, 1162, 1260
BstDSI	CCRYGG	1 cut(s)	399
BstF5I	GGATG	3 cut(s)	341, 683, 806
BstH2I	RGCGCY	1 cut(s)	1050
BstHHI	GCGC	1 cut(s)	1049
BstKTI	GATC	2 cut(s)	238, 1225
BstMBI	GATC	2 cut(s)	235, 1222
BstMCI	CGRYCG	1 cut(s)	847
BstMWI	GCNNNNNNNGC	4 cut(s)	647, 838, 929, 1163
BstNI	CCWGG	2 cut(s)	362, 896
BstNSI	RCATGY	1 cut(s)	429
BstPAI	GACNNNNGTC	1 cut(s)	990
BstSCI	CCNGG	2 cut(s)	360, 894
BstSFI	CTRYAG	2 cut(s)	309, 330
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
BstZI	CGGCCG	1 cut(s)	844
BsuRI	GGCC	6 cut(s)	245, 594, 609, 767, 846, 963
BtgI	CCRYGG	1 cut(s)	399
BtrI	CACGTC	1 cut(s)	1003
BtsCI	GGATG	3 cut(s)	341, 683, 806
BtsI	GCAGTG	1 cut(s)	412
BtsIMutI	CAGTG	4 cut(s)	121, 324, 412, 442
Cac8I	GCNNGC	4 cut(s)	380, 611, 855, 1159
CfoI	GCGC	1 cut(s)	1049
Cfr10I	RCCGGY	1 cut(s)	609
Cfr13I	GGNCC	4 cut(s)	507, 543, 592, 607
Csp6I	GTAC	6 cut(s)	339, 453, 673, 747, 909, 1264
CviAII	CATG	7 cut(s)	10, 400, 426, 811, 988, 1250, 1274
CviQI	GTAC	6 cut(s)	339, 453, 673, 747, 909, 1264
DdeI	CTNAG	3 cut(s)	912, 1162, 1260
DpnI	GATC	2 cut(s)	237, 1224
DpnII	GATC	2 cut(s)	235, 1222
DriI	GACNNNNNGTC	1 cut(s)	229
EaeI	YGGCCR	1 cut(s)	844
EagI	CGGCCG	1 cut(s)	844
Eam1104I	CTCTTC	3 cut(s)	627, 912, 1001
Eam1105I	GACNNNNNGTC	1 cut(s)	229
EarI	CTCTTC	3 cut(s)	627, 912, 1001
Ecl136II	GAGCTC	1 cut(s)	1161
EclXI	CGGCCG	1 cut(s)	844
Eco130I	CCWWGG	3 cut(s)	169, 399, 1316
Eco147I	AGGCCT	1 cut(s)	963
Eco24I	GRGCYC	4 cut(s)	8, 487, 1121, 1163
Eco47I	GGWCC	2 cut(s)	507, 543
Eco52I	CGGCCG	1 cut(s)	844
Eco53kI	GAGCTC	1 cut(s)	1161
Eco57I	CTGAAG	1 cut(s)	948
EcoICRI	GAGCTC	1 cut(s)	1161
EcoO109I	RGGNCCY	1 cut(s)	507
EcoRI	GAATTC	1 cut(s)	13
EcoRII	CCWGG	2 cut(s)	360, 894
EcoT14I	CCWWGG	3 cut(s)	169, 399, 1316
EcoT38I	GRGCYC	4 cut(s)	8, 487, 1121, 1163
ErhI	CCWWGG	3 cut(s)	169, 399, 1316
FaeI	CATG	7 cut(s)	13, 403, 429, 814, 991, 1253, 1277
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	7 cut(s)	9, 399, 425, 810, 987, 1249, 1273
FauNDI	CATATG	2 cut(s)	652, 1219
FbaI	TGATCA	1 cut(s)	1222
FokI	GGATG	3 cut(s)	328, 670, 793
FriOI	GRGCYC	4 cut(s)	8, 487, 1121, 1163
FspBI	CTAG	3 cut(s)	104, 645, 1089
GlaI	GCGC	1 cut(s)	1048
HaeII	RGCGCY	1 cut(s)	1050
HaeIII	GGCC	6 cut(s)	245, 594, 609, 767, 846, 963
HapII	CCGG	4 cut(s)	546, 610, 876, 1140
HhaI	GCGC	1 cut(s)	1049
Hin1II	CATG	7 cut(s)	13, 403, 429, 814, 991, 1253, 1277
Hin6I	GCGC	1 cut(s)	1047
HinP1I	GCGC	1 cut(s)	1047
HindIII	AAGCTT	2 cut(s)	930, 1074
HinfI	GANTC	5 cut(s)	269, 391, 991, 1228, 1323
HpaII	CCGG	4 cut(s)	546, 610, 876, 1140
HphI	GGTGA	3 cut(s)	68, 268, 967
Hpy166II	GTNNAC	1 cut(s)	1266
Hpy188I	TCNGA	7 cut(s)	189, 223, 235, 294, 959, 1227, 1328
Hpy188III	TCNNGA	4 cut(s)	488, 798, 1016, 1089
Hpy8I	GTNNAC	1 cut(s)	1266
Hpy99I	CGWCG	2 cut(s)	185, 1004
HpyAV	CCTTC	6 cut(s)	474, 579, 598, 715, 771, 1135
HpyCH4III	ACNGT	4 cut(s)	122, 463, 746, 1212
HpyCH4IV	ACGT	3 cut(s)	183, 1002, 1096
HpyCH4V	TGCA	6 cut(s)	322, 382, 665, 1052, 1136, 1198
HpyF10VI	GCNNNNNNNGC	4 cut(s)	647, 838, 929, 1163
HpyF3I	CTNAG	3 cut(s)	912, 1162, 1260
HpySE526I	ACGT	3 cut(s)	183, 1002, 1096
Hsp92II	CATG	7 cut(s)	13, 403, 429, 814, 991, 1253, 1277
HspAI	GCGC	1 cut(s)	1047
KroI	GCCGGC	1 cut(s)	609
KroNI	GCCGGC	1 cut(s)	611
Ksp22I	TGATCA	1 cut(s)	1222
Kzo9I	GATC	2 cut(s)	235, 1222
LguI	GCTCTTC	1 cut(s)	1001
LmnI	GCTCC	5 cut(s)	11, 174, 475, 803, 1124
LweI	GCATC	3 cut(s)	815, 841, 1185
MaeI	CTAG	3 cut(s)	104, 645, 1089
MaeII	ACGT	3 cut(s)	183, 1002, 1096
MaeIII	GTNAC	6 cut(s)	116, 274, 526, 710, 823, 973
MalI	GATC	2 cut(s)	237, 1224
MboI	GATC	2 cut(s)	235, 1222
MboII	GAAGA	8 cut(s)	48, 411, 561, 644, 751, 929, 1018, 1112
MflI	RGATCY	1 cut(s)	235
MhlI	GDGCHC	4 cut(s)	8, 487, 1121, 1163
MluCI	AATT	7 cut(s)	13, 52, 95, 697, 705, 758, 1174
MlyI	GAGTC	4 cut(s)	278, 385, 1000, 1222
MroNI	GCCGGC	1 cut(s)	609
MseI	TTAA	2 cut(s)	162, 258
MspA1I	CMGCKG	2 cut(s)	926, 1166
MspI	CCGG	4 cut(s)	546, 610, 876, 1140
MspR9I	CCNGG	2 cut(s)	362, 896
Mva1269I	GAATGC	1 cut(s)	1011
MvaI	CCWGG	2 cut(s)	362, 896
MwoI	GCNNNNNNNGC	4 cut(s)	647, 838, 929, 1163
NaeI	GCCGGC	1 cut(s)	611
NcoI	CCATGG	1 cut(s)	399
NdeI	CATATG	2 cut(s)	652, 1219
NdeII	GATC	2 cut(s)	235, 1222
NgoMIV	GCCGGC	1 cut(s)	609
NlaIII	CATG	7 cut(s)	13, 403, 429, 814, 991, 1253, 1277
NlaIV	GGNNCC	2 cut(s)	7, 1120
NmuCI	GTSAC	3 cut(s)	116, 274, 973
NspI	RCATGY	1 cut(s)	429
PceI	AGGCCT	1 cut(s)	963
PciI	ACATGT	1 cut(s)	425
PciSI	GCTCTTC	1 cut(s)	1001
PctI	GAATGC	1 cut(s)	1011
PdiI	GCCGGC	1 cut(s)	611
PfeI	GAWTC	1 cut(s)	1323
PfoI	TCCNGGA	1 cut(s)	360
PleI	GAGTC	4 cut(s)	277, 385, 999, 1222
PpsI	GAGTC	4 cut(s)	277, 385, 999, 1222
PpuMI	RGGWCCY	1 cut(s)	507
PscI	ACATGT	1 cut(s)	425
PshAI	GACNNNNGTC	1 cut(s)	990
PshBI	ATTAAT	2 cut(s)	162, 258
Psp124BI	GAGCTC	1 cut(s)	1163
Psp5II	RGGWCCY	1 cut(s)	507
Psp6I	CCWGG	2 cut(s)	360, 894
PspGI	CCWGG	2 cut(s)	360, 894
PspN4I	GGNNCC	2 cut(s)	7, 1120
PspPI	GGNCC	4 cut(s)	507, 543, 592, 607
PspPPI	RGGWCCY	1 cut(s)	507
PsrI	GAACNNNNNNTAC	2 cut(s)	892, 924
PsuI	RGATCY	1 cut(s)	235
PvuII	CAGCTG	2 cut(s)	926, 1166
RsaI	GTAC	6 cut(s)	340, 454, 674, 748, 910, 1265
RsaNI	GTAC	6 cut(s)	339, 453, 673, 747, 909, 1264
SacI	GAGCTC	1 cut(s)	1163
SapI	GCTCTTC	1 cut(s)	1001
SaqAI	TTAA	2 cut(s)	162, 258
Sau3AI	GATC	2 cut(s)	235, 1222
Sau96I	GGNCC	4 cut(s)	507, 543, 592, 607
ScaI	AGTACT	3 cut(s)	454, 674, 910
SchI	GAGTC	4 cut(s)	278, 385, 1000, 1222
ScrFI	CCNGG	2 cut(s)	362, 896
SduI	GDGCHC	4 cut(s)	8, 487, 1121, 1163
SfaNI	GCATC	3 cut(s)	815, 841, 1185
SfcI	CTRYAG	2 cut(s)	309, 330
SinI	GGWCC	2 cut(s)	507, 543
SmlI	CTYRAG	2 cut(s)	1016, 1071
SmoI	CTYRAG	2 cut(s)	1016, 1071
Sse9I	AATT	7 cut(s)	13, 52, 95, 697, 705, 758, 1174
SseBI	AGGCCT	1 cut(s)	963
SsiI	CCGC	2 cut(s)	1044, 1057
SspMI	CTAG	3 cut(s)	104, 645, 1089
SstI	GAGCTC	1 cut(s)	1163
StuI	AGGCCT	1 cut(s)	963
StyD4I	CCNGG	2 cut(s)	360, 894
StyI	CCWWGG	3 cut(s)	169, 399, 1316
TaaI	ACNGT	4 cut(s)	122, 463, 746, 1212
TaiI	ACGT	3 cut(s)	186, 1005, 1099
TaqI	TCGA	3 cut(s)	422, 984, 994
TasI	AATT	7 cut(s)	13, 52, 95, 697, 705, 758, 1174
TatI	WGTACW	5 cut(s)	452, 672, 746, 908, 1263
TauI	GCSGC	2 cut(s)	1047, 1060
TfiI	GAWTC	1 cut(s)	1323
Tru1I	TTAA	2 cut(s)	162, 258
Tru9I	TTAA	2 cut(s)	162, 258
TscAI	CASTG	4 cut(s)	121, 324, 412, 442
TseFI	GTSAC	3 cut(s)	116, 274, 973
Tsp45I	GTSAC	3 cut(s)	116, 274, 973
TspDTI	ATGAA	3 cut(s)	26, 570, 752
TspGWI	ACGGA	1 cut(s)	262
TspRI	CASTG	4 cut(s)	121, 324, 412, 442
VpaK11BI	GGWCC	2 cut(s)	507, 543
VspI	ATTAAT	2 cut(s)	162, 258
XapI	RAATTY	3 cut(s)	13, 697, 758
XbaI	TCTAGA	1 cut(s)	1088
XceI	RCATGY	1 cut(s)	429
XspI	CTAG	3 cut(s)	104, 645, 1089
ZrmI	AGTACT	3 cut(s)	454, 674, 910

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.