Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0010676

Physical Location & Seq

Genomic Coordinates Forward (+)

1870674 .. 1874036

Gene Structure 3363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G023000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1671 bp

ATGGGTTCCATGAATTCAAACAACTGGCTTTCCTTTCCTCTTTCTCCTACTCATTCTTCTTTGCCATCACAGCTCCATCCTTCTCAGTCTCACCAATTCTCTCTAGGGTTAGTCAATGATTCTATGGACAACCCTTTCCAAAACCAAGAGTGGAATTTGATTAACACCCAAGGGAGCAATGAAGTTCCAAAGGTGGCTGATTTTCTCGGCGTGAGCAAATCCGAAAACCACTCAGATCTTGTGGCCTTCAATGATATTCAGGCCAACGATTCGGTGTCCGATTACTTATTTCCCAACAACAGCATAGTCCCAGTACAAGACACAGTTGTAGCCAATTCTAGCAGCTATGATTTCCAAGAAAAATCCAACAGCCTTCAATCGTTGACTCTCTCAATGGGAAGTGGCAAGGGCTCTTCAGCATGTGAAACCAGCACGGAAAATACCAGCATTGCGACTGTGGAAGCTCCCCCAAGAAGGATTTTGGACACATTCGGACAAAGAACATCTATTTATCGCGGCGTAACAAGGCATAGATGGACAGGAAGGTATGAAGCTCATCTTTGGGATAATAGTTGCAGAAGGGAGGGACAATCGAGGAAGGGCCGCCAAGTCTACTTGGGTGGGTATGACAAAGAAGAGAAAGCAGCTAGGGCTTATGACTTGGCTGCACTGAAGTACTGGGGAACTTCTACTACAACCAATTTTCCAATTAGTAACTATGAGAAGGAGGTAGAGGAGATGAAGAACATGACAAGACAAGAATTTGTGGCAGCCATTAGAAGGAAAAGTAGTGGCTTTTCTAGGGGAGCATCCATGTATCGTGGAGTTACAAGGCATCATCAACATGGACGATGGCAAGCAAGGATTGGCAGAGTTGCCGGAAACAAGGATCTTTACTTGGGAACATTCAGTACTGAAGAGGAGGCAGCTGAAGCTTATGACATAGCAGCAATAAAATTCCGAGGCCTAAATGCCGTGACCAACTTCGACATGAGCCGGTATGATGTGAAGAGCATTTTGGAGAGCAACACCCTCCCAATAGGAGGAGGAGCAGCCAAACGTCTCAAAGAGGCTCAAGCCCTGGAATCTTCTAGAAAACGCGAAGAGATGATAGCTCTTGGTTCCACCTTTCAATACGCAGCTGCCGGAGCCACCAGCTCATCCACCTCAGCCGGTCGGAATTTGCAAGCATACTCATTGATGCAGCAGCAGCAGTCAACCTTTGACCAAGCTGTACAGCAACCATCTCAGCCCCTACTTTCTCTACAAAACCATGATATTTCTCAGTACAGCCACCACCATGATCCTTCTTCATACCAAAATTACATCCAGACCCAGCTGCAGCTGCACCAGGCCCAGCAGCAATACCAGCCAACCCAGAACCCTCACCACCAGTTCTACAACAGCTATGGGCTTCAGAGCACACACCCAGCTTTGCTTCAAGGTCTCATGGACATGGGCTCTGCTTCTGGGGTTATGGATCACAACAATGGCAGCTCCAGTGGGAGCTATAGTGCAGGGGGGTATTTAGGTAATAATGGAATTGGGTTGGCTTCAAATTCATCAGCAAGCAATGCAGTGGGGTCTGCTGAAGAACTTGCACTTGTGAAGGTTGATTATGATATGCCTAATGGTGGAGGAGCGTATGGGTATTTTTACAATGTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000723 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010449 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0031323 GO:0031326 GO:0032200 GO:0032501 GO:0032502 GO:0034641 GO:0035266 GO:0040007 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098727 GO:0099402 GO:0140110 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

557

Amino Acids

61.25

Weight (kDa)

6.23

Isoelectric Point (pI)

48.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51190 AT3G20840
fragaria_vesca	FvH4_3g43100 FvH4_3g43100
malus_domestica	MD03G1023900.v1.1 MD11G1028800.v1.1
prunus_persica	Prupe.6G023000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0077201
rosa_laevigata	RLG00000036673
rosa_multiflora	Rmu_co8310213.1_g000001 Rmu_sc0000099.1_g000011 Rmu_sc0004844.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004880
rosa_rugosa	Rorug05G0452700
rosa_samantha	Rh5AG507600 Rh5BG529100 Rh5CG553600 Rh5DG541100 Rh5DG541300
rosa_wichuraiana	Rw5G046970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	612
AccII	CGCG	2 cut(s)	516, 1101
AciI	CCGC	2 cut(s)	516, 604
AclWI	GGATC	3 cut(s)	897, 1298, 1488
AcsI	RAATTY	6 cut(s)	13, 154, 761, 956, 1180, 1558
AcuI	CTGAAG	6 cut(s)	399, 692, 936, 951, 1400, 1611
AfaI	GTAC	5 cut(s)	315, 677, 913, 1236, 1289
AfiI	CCNNNNNNNGG	4 cut(s)	474, 780, 1043, 1634
AgsI	TTSAA	6 cut(s)	18, 250, 377, 1133, 1442, 1557
AjnI	CCWGG	2 cut(s)	1080, 1350
AjuI	GAANNNNNNNTTGG	2 cut(s)	1001, 1033
Alw21I	GWGCWC	1 cut(s)	1424
Alw26I	GTCTC	3 cut(s)	93, 1067, 1451
AlwI	GGATC	3 cut(s)	897, 1298, 1488
AoxI	GGCC	5 cut(s)	243, 261, 601, 964, 1353
ApoI	RAATTY	6 cut(s)	13, 154, 761, 956, 1180, 1558
AspS9I	GGNCC	2 cut(s)	601, 1354
AsuHPI	GGTGA	2 cut(s)	83, 1379
BanII	GRGCYC	2 cut(s)	413, 1463
Bbv12I	GWGCWC	1 cut(s)	1424
BbvCI	CCTCAGC	1 cut(s)	1168
BccI	CCATC	5 cut(s)	73, 84, 528, 846, 1252
BceAI	ACGGC	1 cut(s)	959
BciT130I	CCWGG	2 cut(s)	1082, 1352
BcoDI	GTCTC	3 cut(s)	93, 1067, 1451
BfaI	CTAG	5 cut(s)	104, 339, 648, 801, 1092
BfmI	CTRYAG	2 cut(s)	1340, 1510
BglII	AGATCT	1 cut(s)	235
BmcAI	AGTACT	2 cut(s)	677, 913
Bme1390I	CCNGG	2 cut(s)	1082, 1352
BmgT120I	GGNCC	2 cut(s)	601, 1354
BmiI	GGNNCC	3 cut(s)	7, 1123, 1150
BmrFI	CCNGG	2 cut(s)	1082, 1352
BmrI	ACTGGG	2 cut(s)	305, 688
BmsI	GCATC	3 cut(s)	818, 844, 1191
BmuI	ACTGGG	2 cut(s)	305, 688
BpmI	CTGGAG	1 cut(s)	1483
Bpu10I	CCTNAGC	1 cut(s)	1168
BpuEI	CTTGAG	1 cut(s)	1059
BsaI	GGTCTC	1 cut(s)	1451
BsaJI	CCNNGG	3 cut(s)	169, 961, 1080
BsaXI	ACNNNNNCTCC	2 cut(s)	1498, 1528
Bsc4I	CCNNNNNNNGG	4 cut(s)	474, 780, 1043, 1634
Bse118I	RCCGGY	2 cut(s)	996, 1172
Bse1I	ACTGG	5 cut(s)	29, 311, 683, 1393, 1500
Bse3DI	GCAATG	3 cut(s)	184, 447, 1579
BseBI	CCWGG	2 cut(s)	1082, 1352
BseDI	CCNNGG	3 cut(s)	169, 961, 1080
BseGI	GGATG	4 cut(s)	76, 809, 1160, 1326
BseLI	CCNNNNNNNGG	4 cut(s)	474, 780, 1043, 1634
BseMI	GCAATG	3 cut(s)	184, 447, 1579
BseMII	CTCAG	5 cut(s)	98, 246, 1182, 1262, 1298
BseNI	ACTGG	5 cut(s)	29, 311, 683, 1393, 1500
BseRI	GAGGAG	5 cut(s)	749, 935, 1059, 1062, 1653
BseYI	CCCAGC	3 cut(s)	1335, 1356, 1429
BsgI	GTGCAG	3 cut(s)	651, 1331, 1536
Bsh1236I	CGCG	2 cut(s)	516, 1101
Bsh1285I	CGRYCG	1 cut(s)	1177
BshFI	GGCC	5 cut(s)	245, 263, 603, 966, 1355
BsiEI	CGRYCG	1 cut(s)	1177
BsiHKAI	GWGCWC	1 cut(s)	1424
BsiSI	CCGG	4 cut(s)	879, 997, 1146, 1173
BslFI	GGGAC	2 cut(s)	293, 600
BslI	CCNNNNNNNGG	4 cut(s)	474, 780, 1043, 1634
BsmAI	GTCTC	3 cut(s)	93, 1067, 1451
BsmBI	CGTCTC	1 cut(s)	1067
BsmFI	GGGAC	2 cut(s)	293, 600
BsnI	GGCC	5 cut(s)	245, 263, 603, 966, 1355
Bso31I	GGTCTC	1 cut(s)	1451
Bsp1286I	GDGCHC	3 cut(s)	413, 1424, 1463
Bsp1407I	TGTACA	1 cut(s)	1234
Bsp143I	GATC	4 cut(s)	235, 889, 1303, 1480
BspACI	CCGC	2 cut(s)	516, 604
BspANI	GGCC	5 cut(s)	245, 263, 603, 966, 1355
BspCNI	CTCAG	5 cut(s)	97, 245, 1181, 1261, 1297
BspFNI	CGCG	2 cut(s)	516, 1101
BspLI	GGNNCC	3 cut(s)	7, 1123, 1150
BspMAI	CTGCAG	1 cut(s)	1344
BspPI	GGATC	3 cut(s)	897, 1298, 1488
BspQI	GCTCTTC	2 cut(s)	418, 1004
BspTNI	GGTCTC	1 cut(s)	1451
BsrDI	GCAATG	3 cut(s)	184, 447, 1579
BsrFI	RCCGGY	2 cut(s)	996, 1172
BsrGI	TGTACA	1 cut(s)	1234
BsrI	ACTGG	5 cut(s)	29, 311, 683, 1393, 1500
BssAI	RCCGGY	2 cut(s)	996, 1172
BssECI	CCNNGG	3 cut(s)	169, 961, 1080
BssMI	GATC	4 cut(s)	235, 889, 1303, 1480
BssT1I	CCWWGG	1 cut(s)	169
Bst2UI	CCWGG	2 cut(s)	1082, 1352
Bst4CI	ACNGT	2 cut(s)	325, 457
Bst6I	CTCTTC	5 cut(s)	418, 630, 912, 1004, 1098
BstAPI	GCANNNNNTGC	1 cut(s)	1574
BstAUI	TGTACA	1 cut(s)	1234
BstC8I	GCNNGC	3 cut(s)	858, 1188, 1570
BstDEI	CTNAG	5 cut(s)	84, 232, 1168, 1248, 1284
BstF5I	GGATG	4 cut(s)	76, 809, 1160, 1326
BstFNI	CGCG	2 cut(s)	516, 1101
BstKTI	GATC	4 cut(s)	238, 892, 1306, 1483
BstMAI	GTCTC	3 cut(s)	93, 1067, 1451
BstMBI	GATC	4 cut(s)	235, 889, 1303, 1480
BstMCI	CGRYCG	1 cut(s)	1177
BstMWI	GCNNNNNNNGC	8 cut(s)	70, 650, 932, 1148, 1210, 1345, 1369, 1574
BstNI	CCWGG	2 cut(s)	1082, 1352
BstNSI	RCATGY	1 cut(s)	423
BstSCI	CCNGG	2 cut(s)	1080, 1350
BstSFI	CTRYAG	2 cut(s)	1340, 1510
BstUI	CGCG	2 cut(s)	516, 1101
BstX2I	RGATCY	2 cut(s)	235, 889
BstYI	RGATCY	2 cut(s)	235, 889
BsuRI	GGCC	5 cut(s)	245, 263, 603, 966, 1355
BtsCI	GGATG	4 cut(s)	76, 809, 1160, 1326
BtsI	GCAGTG	1 cut(s)	1584
BtsIMutI	CAGTG	3 cut(s)	668, 1507, 1584
Cac8I	GCNNGC	3 cut(s)	858, 1188, 1570
Cfr10I	RCCGGY	2 cut(s)	996, 1172
Cfr13I	GGNCC	2 cut(s)	601, 1354
Csp6I	GTAC	5 cut(s)	314, 676, 912, 1235, 1288
CviQI	GTAC	5 cut(s)	314, 676, 912, 1235, 1288
DdeI	CTNAG	5 cut(s)	84, 232, 1168, 1248, 1284
DpnI	GATC	4 cut(s)	237, 891, 1305, 1482
DpnII	GATC	4 cut(s)	235, 889, 1303, 1480
Eam1104I	CTCTTC	5 cut(s)	418, 630, 912, 1004, 1098
EarI	CTCTTC	5 cut(s)	418, 630, 912, 1004, 1098
Eco130I	CCWWGG	1 cut(s)	169
Eco147I	AGGCCT	1 cut(s)	966
Eco24I	GRGCYC	2 cut(s)	413, 1463
Eco31I	GGTCTC	1 cut(s)	1451
Eco57I	CTGAAG	6 cut(s)	399, 692, 936, 951, 1400, 1611
EcoRI	GAATTC	1 cut(s)	13
EcoRII	CCWGG	2 cut(s)	1080, 1350
EcoT14I	CCWWGG	1 cut(s)	169
EcoT38I	GRGCYC	2 cut(s)	413, 1463
ErhI	CCWWGG	1 cut(s)	169
Esp3I	CGTCTC	1 cut(s)	1067
FalI	AAGNNNNNCTT	2 cut(s)	543, 575
FaqI	GGGAC	2 cut(s)	293, 600
FblI	GTMKAC	1 cut(s)	612
FokI	GGATG	4 cut(s)	63, 796, 1147, 1313
FriOI	GRGCYC	2 cut(s)	413, 1463
FspBI	CTAG	5 cut(s)	104, 339, 648, 801, 1092
GsaI	CCCAGC	3 cut(s)	1339, 1360, 1433
GsuI	CTGGAG	1 cut(s)	1483
HaeIII	GGCC	5 cut(s)	245, 263, 603, 966, 1355
HapII	CCGG	4 cut(s)	879, 997, 1146, 1173
HincII	GTYRAC	2 cut(s)	384, 1218
HindII	GTYRAC	2 cut(s)	384, 1218
HindIII	AAGCTT	1 cut(s)	933
HinfI	GANTC	4 cut(s)	119, 269, 385, 1085
HpaII	CCGG	4 cut(s)	879, 997, 1146, 1173
HphI	GGTGA	2 cut(s)	83, 1379
Hpy166II	GTNNAC	3 cut(s)	384, 613, 1218
Hpy188I	TCNGA	7 cut(s)	223, 235, 280, 494, 962, 1179, 1419
Hpy188III	TCNNGA	2 cut(s)	1092, 1330
Hpy8I	GTNNAC	3 cut(s)	384, 613, 1218
HpyCH4III	ACNGT	2 cut(s)	325, 457
HpyCH4IV	ACGT	1 cut(s)	1060
HpyCH4V	TGCA	9 cut(s)	576, 668, 1186, 1204, 1342, 1348, 1517, 1577, 1601
HpyF10VI	GCNNNNNNNGC	8 cut(s)	70, 650, 932, 1148, 1210, 1345, 1369, 1574
HpyF3I	CTNAG	5 cut(s)	84, 232, 1168, 1248, 1284
HpySE526I	ACGT	1 cut(s)	1060
Kzo9I	GATC	4 cut(s)	235, 889, 1303, 1480
LguI	GCTCTTC	2 cut(s)	418, 1004
LmnI	GCTCC	9 cut(s)	78, 174, 469, 806, 1049, 1148, 1502, 1506, 1640
LweI	GCATC	3 cut(s)	818, 844, 1191
MaeI	CTAG	5 cut(s)	104, 339, 648, 801, 1092
MaeII	ACGT	1 cut(s)	1060
MaeIII	GTNAC	4 cut(s)	520, 713, 826, 976
MalI	GATC	4 cut(s)	237, 891, 1305, 1482
MboI	GATC	4 cut(s)	235, 889, 1303, 1480
MflI	RGATCY	2 cut(s)	235, 889
MhlI	GDGCHC	3 cut(s)	413, 1424, 1463
MlyI	GAGTC	1 cut(s)	379
MmeI	TCCRAC	2 cut(s)	390, 1157
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	4 cut(s)	843, 1299, 1454, 1488
MspA1I	CMGCKG	4 cut(s)	929, 1142, 1339, 1345
MspI	CCGG	4 cut(s)	879, 997, 1146, 1173
MspR9I	CCNGG	2 cut(s)	1082, 1352
MvaI	CCWGG	2 cut(s)	1082, 1352
MvnI	CGCG	2 cut(s)	516, 1101
MwoI	GCNNNNNNNGC	8 cut(s)	70, 650, 932, 1148, 1210, 1345, 1369, 1574
NdeII	GATC	4 cut(s)	235, 889, 1303, 1480
NlaIV	GGNNCC	3 cut(s)	7, 1123, 1150
NmeAIII	GCCGAG	1 cut(s)	186
NmuCI	GTSAC	1 cut(s)	976
NspI	RCATGY	1 cut(s)	423
PceI	AGGCCT	1 cut(s)	966
PciSI	GCTCTTC	2 cut(s)	418, 1004
PfeI	GAWTC	3 cut(s)	119, 269, 1085
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
Psp6I	CCWGG	2 cut(s)	1080, 1350
PspFI	CCCAGC	3 cut(s)	1335, 1356, 1429
PspGI	CCWGG	2 cut(s)	1080, 1350
PspN4I	GGNNCC	3 cut(s)	7, 1123, 1150
PspPI	GGNCC	2 cut(s)	601, 1354
PsrI	GAACNNNNNNTAC	4 cut(s)	676, 708, 895, 927
PstI	CTGCAG	1 cut(s)	1344
PsuI	RGATCY	2 cut(s)	235, 889
PvuII	CAGCTG	4 cut(s)	929, 1142, 1339, 1345
RsaI	GTAC	5 cut(s)	315, 677, 913, 1236, 1289
RsaNI	GTAC	5 cut(s)	314, 676, 912, 1235, 1288
RseI	CAYNNNNRTG	4 cut(s)	843, 1299, 1454, 1488
SapI	GCTCTTC	2 cut(s)	418, 1004
SaqAI	TTAA	1 cut(s)	162
Sau3AI	GATC	4 cut(s)	235, 889, 1303, 1480
Sau96I	GGNCC	2 cut(s)	601, 1354
ScaI	AGTACT	2 cut(s)	677, 913
SchI	GAGTC	1 cut(s)	379
ScrFI	CCNGG	2 cut(s)	1082, 1352
SduI	GDGCHC	3 cut(s)	413, 1424, 1463
SfaNI	GCATC	3 cut(s)	818, 844, 1191
SfcI	CTRYAG	2 cut(s)	1340, 1510
SmiMI	CAYNNNNRTG	4 cut(s)	843, 1299, 1454, 1488
SmlI	CTYRAG	1 cut(s)	1074
SmoI	CTYRAG	1 cut(s)	1074
SseBI	AGGCCT	1 cut(s)	966
SsiI	CCGC	2 cut(s)	516, 604
SspMI	CTAG	5 cut(s)	104, 339, 648, 801, 1092
StuI	AGGCCT	1 cut(s)	966
StyD4I	CCNGG	2 cut(s)	1080, 1350
StyI	CCWWGG	1 cut(s)	169
TaaI	ACNGT	2 cut(s)	325, 457
TaiI	ACGT	1 cut(s)	1063
TaqI	TCGA	2 cut(s)	593, 987
TatI	WGTACW	5 cut(s)	313, 675, 911, 1234, 1287
TauI	GCSGC	2 cut(s)	519, 606
TfiI	GAWTC	3 cut(s)	119, 269, 1085
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	3 cut(s)	675, 1507, 1584
TseFI	GTSAC	1 cut(s)	976
Tsp45I	GTSAC	1 cut(s)	976
TspDTI	ATGAA	6 cut(s)	26, 195, 564, 755, 1302, 1551
TspGWI	ACGGA	1 cut(s)	449
TspRI	CASTG	3 cut(s)	675, 1507, 1584
XapI	RAATTY	6 cut(s)	13, 154, 761, 956, 1180, 1558
XbaI	TCTAGA	1 cut(s)	1091
XceI	RCATGY	1 cut(s)	423
XmiI	GTMKAC	1 cut(s)	612
XspI	CTAG	5 cut(s)	104, 339, 648, 801, 1092
ZrmI	AGTACT	2 cut(s)	677, 913

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.