Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8310213.1

Orthogroup ID

OG0010676

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 801

Gene Structure 801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8310213.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 755 bp

gtactgaggaagaggcagctgaagcttatgacatagcagcgataaagttccgaggcctgaacgccgtcaccaacttcgacatgagtcgatacgacgtgaagagcattcttgagagcaacactctccccatcgggggcggcgctgcaaagcggctgaaagaggctcaagctttggaaacatctagaaaacgtgaagaaatgatagctctgggctccaccttccaatatgcagccggaagcagctcatcagcgagctcagctgctcgtaatttacaggcatactctttgatgcagcagcaaccacagtcagcatatgatcagactctactttctctacaaaaccatgacatatctcagtacacccaccatgacccctctgcttaccaaaactacatccaaacccagcttcagttgcaacagcaatctagtaattcttataacattcaccagcaaagccaaagccctcatcagtattacaacacctacttgcagagtactcatcctgctttgcttcaaggcctgatggacatggggactgcatctactactgtcatggataatagtgctggagggtatttagggcataatggactcggggtggcttcgaattcaacgaccacaaatggggtcggatcggccgaagaacttgccctcgttaaggttgattacgacatgccatctggagggtatggcagctggtccggcggctccgttcagggatcaaatcccggtgttttcacaatgtggaatgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000723 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010449 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0031323 GO:0031326 GO:0032200 GO:0032501 GO:0032502 GO:0034641 GO:0035266 GO:0040007 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098727 GO:0099402 GO:0140110 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

250

Amino Acids

27.01

Weight (kDa)

5.01

Isoelectric Point (pI)

59.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51190 AT3G20840
fragaria_vesca	FvH4_3g43100 FvH4_3g43100
malus_domestica	MD03G1023900.v1.1 MD11G1028800.v1.1
prunus_persica	Prupe.6G023000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0077201
rosa_laevigata	RLG00000036673
rosa_multiflora	Rmu_co8310213.1_g000001 Rmu_sc0000099.1_g000011 Rmu_sc0004844.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004880
rosa_rugosa	Rorug05G0452700
rosa_samantha	Rh5AG507600 Rh5BG529100 Rh5CG553600 Rh5DG541100 Rh5DG541300
rosa_wichuraiana	Rw5G046970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	437
AciI	CCGC	3 cut(s)	137, 150, 704
AclWI	GGATC	2 cut(s)	639, 726
AcoI	YGGCCR	1 cut(s)	635
AcsI	RAATTY	1 cut(s)	606
AcuI	CTGAAG	2 cut(s)	41, 391
AdeI	CACNNNGTG	1 cut(s)	743
AfaI	GTAC	3 cut(s)	3, 358, 495
AfiI	CCNNNNNNNGG	5 cut(s)	132, 133, 623, 657, 682
AgsI	TTSAA	2 cut(s)	514, 611
AjiI	CACGTC	1 cut(s)	96
AjuI	GAANNNNNNNTTGG	2 cut(s)	389, 421
AluBI	AGCT	9 cut(s)	19, 25, 169, 205, 242, 254, 259, 405, 695
AluI	AGCT	9 cut(s)	19, 25, 169, 205, 242, 254, 259, 405, 695
Alw21I	GWGCWC	1 cut(s)	256
AlwI	GGATC	2 cut(s)	639, 726
Ama87I	CYCGRG	1 cut(s)	592
AoxI	GGCC	3 cut(s)	54, 516, 635
ApeKI	GCWGC	9 cut(s)	16, 37, 142, 229, 239, 259, 291, 294, 692
ApoI	RAATTY	1 cut(s)	606
AspLEI	GCGC	1 cut(s)	142
AspS9I	GGNCC	1 cut(s)	698
AsuC2I	CCSGG	1 cut(s)	728
AsuHPI	GGTGA	2 cut(s)	60, 436
AsuII	TTCGAA	1 cut(s)	604
AvaI	CYCGRG	1 cut(s)	592
AvaII	GGWCC	1 cut(s)	698
BanII	GRGCYC	2 cut(s)	214, 256
Bbv12I	GWGCWC	1 cut(s)	256
BbvI	GCAGC	9 cut(s)	28, 49, 129, 241, 246, 251, 303, 306, 704
BccI	CCATC	3 cut(s)	136, 516, 684
BceAI	ACGGC	1 cut(s)	49
BcgI	CGANNNNNNTGC	2 cut(s)	628, 662
BclI	TGATCA	1 cut(s)	315
BcnI	CCSGG	1 cut(s)	728
BfaI	CTAG	2 cut(s)	182, 425
BfoI	RGCGCY	1 cut(s)	143
BlpI	GCTNAGC	1 cut(s)	255
BmcAI	AGTACT	1 cut(s)	495
Bme1390I	CCNGG	1 cut(s)	728
Bme18I	GGWCC	1 cut(s)	698
BmeT110I	CYCGRG	1 cut(s)	592
BmgBI	CACGTC	1 cut(s)	96
BmgT120I	GGNCC	1 cut(s)	698
BmiI	GGNNCC	2 cut(s)	213, 708
BmrFI	CCNGG	1 cut(s)	728
BmsI	GCATC	2 cut(s)	278, 547
BoxI	GACNNNNGTC	1 cut(s)	83
BplI	GAGNNNNNCTC	2 cut(s)	105, 137
BpmI	CTGGAG	2 cut(s)	587, 701
Bpu1102I	GCTNAGC	1 cut(s)	255
Bpu14I	TTCGAA	1 cut(s)	604
BpuEI	CTTGAG	2 cut(s)	130, 149
BpuMI	CCSGG	1 cut(s)	728
BsaJI	CCNNGG	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	5 cut(s)	132, 133, 623, 657, 682
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	2 cut(s)	392, 498
BseLI	CCNNNNNNNGG	5 cut(s)	132, 133, 623, 657, 682
BseMII	CTCAG	2 cut(s)	269, 367
BseX3I	CGGCCG	1 cut(s)	635
BseXI	GCAGC	9 cut(s)	28, 49, 129, 241, 246, 251, 303, 306, 704
BseYI	CCCAGC	1 cut(s)	401
Bsh1285I	CGRYCG	1 cut(s)	638
BshFI	GGCC	3 cut(s)	56, 518, 637
BsiEI	CGRYCG	1 cut(s)	638
BsiHKAI	GWGCWC	1 cut(s)	256
BsiHKCI	CYCGRG	1 cut(s)	592
BsiSI	CCGG	3 cut(s)	233, 701, 728
BslFI	GGGAC	1 cut(s)	546
BslI	CCNNNNNNNGG	5 cut(s)	132, 133, 623, 657, 682
BsmFI	GGGAC	1 cut(s)	546
BsmI	GAATGC	1 cut(s)	104
BsnI	GGCC	3 cut(s)	56, 518, 637
BsoBI	CYCGRG	1 cut(s)	592
Bsp119I	TTCGAA	1 cut(s)	604
Bsp1286I	GDGCHC	2 cut(s)	214, 256
Bsp143I	GATC	3 cut(s)	315, 631, 718
Bsp1720I	GCTNAGC	1 cut(s)	255
BspACI	CCGC	3 cut(s)	137, 150, 704
BspANI	GGCC	3 cut(s)	56, 518, 637
BspCNI	CTCAG	2 cut(s)	268, 366
BspLI	GGNNCC	2 cut(s)	213, 708
BspPI	GGATC	2 cut(s)	639, 726
BspQI	GCTCTTC	1 cut(s)	94
BspT104I	TTCGAA	1 cut(s)	604
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	3 cut(s)	315, 631, 718
Bst4CI	ACNGT	2 cut(s)	305, 549
Bst6I	CTCTTC	2 cut(s)	5, 94
BstBI	TTCGAA	1 cut(s)	604
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	3 cut(s)	5, 255, 353
BstENI	CCTNNNNNAGG	1 cut(s)	655
BstF5I	GGATG	2 cut(s)	392, 498
BstH2I	RGCGCY	1 cut(s)	143
BstHHI	GCGC	1 cut(s)	142
BstKTI	GATC	3 cut(s)	318, 634, 721
BstMBI	GATC	3 cut(s)	315, 631, 718
BstMCI	CGRYCG	1 cut(s)	638
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 256, 411, 701
BstNSI	RCATGY	1 cut(s)	675
BstPAI	GACNNNNGTC	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	726
BstV1I	GCAGC	9 cut(s)	28, 49, 129, 241, 246, 251, 303, 306, 704
BstZI	CGGCCG	1 cut(s)	635
BsuRI	GGCC	3 cut(s)	56, 518, 637
BtrI	CACGTC	1 cut(s)	96
BtsCI	GGATG	2 cut(s)	392, 498
Cac8I	GCNNGC	1 cut(s)	252
CfoI	GCGC	1 cut(s)	142
Cfr13I	GGNCC	1 cut(s)	698
Csp6I	GTAC	3 cut(s)	2, 357, 494
CviAII	CATG	6 cut(s)	81, 343, 367, 528, 552, 672
CviQI	GTAC	3 cut(s)	2, 357, 494
DdeI	CTNAG	3 cut(s)	5, 255, 353
DpnI	GATC	3 cut(s)	317, 633, 720
DpnII	GATC	3 cut(s)	315, 631, 718
DraIII	CACNNNGTG	1 cut(s)	743
EaeI	YGGCCR	1 cut(s)	635
EagI	CGGCCG	1 cut(s)	635
Eam1104I	CTCTTC	2 cut(s)	5, 94
EarI	CTCTTC	2 cut(s)	5, 94
Ecl136II	GAGCTC	1 cut(s)	254
EclXI	CGGCCG	1 cut(s)	635
Eco147I	AGGCCT	2 cut(s)	56, 518
Eco24I	GRGCYC	2 cut(s)	214, 256
Eco47I	GGWCC	1 cut(s)	698
Eco52I	CGGCCG	1 cut(s)	635
Eco53kI	GAGCTC	1 cut(s)	254
Eco57I	CTGAAG	2 cut(s)	41, 391
Eco88I	CYCGRG	1 cut(s)	592
EcoICRI	GAGCTC	1 cut(s)	254
EcoNI	CCTNNNNNAGG	1 cut(s)	655
EcoRI	GAATTC	1 cut(s)	606
EcoT38I	GRGCYC	2 cut(s)	214, 256
FaeI	CATG	6 cut(s)	84, 346, 370, 531, 555, 675
FaqI	GGGAC	1 cut(s)	546
FatI	CATG	6 cut(s)	80, 342, 366, 527, 551, 671
FauNDI	CATATG	1 cut(s)	312
FbaI	TGATCA	1 cut(s)	315
FokI	GGATG	2 cut(s)	379, 485
FriOI	GRGCYC	2 cut(s)	214, 256
FspBI	CTAG	2 cut(s)	182, 425
GlaI	GCGC	1 cut(s)	141
GsaI	CCCAGC	1 cut(s)	405
GsuI	CTGGAG	2 cut(s)	587, 701
HaeII	RGCGCY	1 cut(s)	143
HaeIII	GGCC	3 cut(s)	56, 518, 637
HapII	CCGG	3 cut(s)	233, 701, 728
HhaI	GCGC	1 cut(s)	142
Hin1II	CATG	6 cut(s)	84, 346, 370, 531, 555, 675
Hin6I	GCGC	1 cut(s)	140
HinP1I	GCGC	1 cut(s)	140
HindIII	AAGCTT	2 cut(s)	23, 167
HinfI	GANTC	3 cut(s)	84, 321, 590
HpaII	CCGG	3 cut(s)	233, 701, 728
HphI	GGTGA	2 cut(s)	60, 436
Hpy166II	GTNNAC	1 cut(s)	359
Hpy188I	TCNGA	3 cut(s)	52, 320, 631
Hpy188III	TCNNGA	3 cut(s)	109, 182, 680
Hpy8I	GTNNAC	1 cut(s)	359
Hpy99I	CGWCG	1 cut(s)	97
HpyAV	CCTTC	1 cut(s)	228
HpyCH4III	ACNGT	2 cut(s)	305, 549
HpyCH4IV	ACGT	2 cut(s)	95, 189
HpyCH4V	TGCA	6 cut(s)	145, 229, 291, 414, 489, 538
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 256, 411, 701
HpyF3I	CTNAG	3 cut(s)	5, 255, 353
HpySE526I	ACGT	2 cut(s)	95, 189
Hsp92II	CATG	6 cut(s)	84, 346, 370, 531, 555, 675
HspAI	GCGC	1 cut(s)	140
Ksp22I	TGATCA	1 cut(s)	315
Kzo9I	GATC	3 cut(s)	315, 631, 718
LguI	GCTCTTC	1 cut(s)	94
LmnI	GCTCC	2 cut(s)	217, 712
Lsp1109I	GCAGC	9 cut(s)	28, 49, 129, 241, 246, 251, 303, 306, 704
LweI	GCATC	2 cut(s)	278, 547
MaeI	CTAG	2 cut(s)	182, 425
MaeII	ACGT	2 cut(s)	95, 189
MaeIII	GTNAC	1 cut(s)	66
MalI	GATC	3 cut(s)	317, 633, 720
MboI	GATC	3 cut(s)	315, 631, 718
MboII	GAAGA	4 cut(s)	22, 111, 205, 652
MhlI	GDGCHC	2 cut(s)	214, 256
MluCI	AATT	3 cut(s)	267, 429, 606
MlyI	GAGTC	3 cut(s)	93, 315, 584
MmeI	TCCRAC	1 cut(s)	609
MnlI	CCTC	8 cut(s)	6, 46, 153, 384, 473, 562, 661, 676
MseI	TTAA	1 cut(s)	656
MspA1I	CMGCKG	3 cut(s)	19, 259, 695
MspI	CCGG	3 cut(s)	233, 701, 728
MspR9I	CCNGG	1 cut(s)	728
Mva1269I	GAATGC	1 cut(s)	104
MwoI	GCNNNNNNNGC	4 cut(s)	22, 256, 411, 701
NciI	CCSGG	1 cut(s)	728
NdeI	CATATG	1 cut(s)	312
NdeII	GATC	3 cut(s)	315, 631, 718
NlaIII	CATG	6 cut(s)	84, 346, 370, 531, 555, 675
NlaIV	GGNNCC	2 cut(s)	213, 708
NmuCI	GTSAC	1 cut(s)	66
NspI	RCATGY	1 cut(s)	675
NspV	TTCGAA	1 cut(s)	604
PceI	AGGCCT	2 cut(s)	56, 518
PciSI	GCTCTTC	1 cut(s)	94
PcsI	WCGNNNNNNNCGW	2 cut(s)	610, 635
PctI	GAATGC	1 cut(s)	104
PleI	GAGTC	3 cut(s)	92, 315, 584
PpsI	GAGTC	3 cut(s)	92, 315, 584
PshAI	GACNNNNGTC	1 cut(s)	83
PsiI	TTATAA	1 cut(s)	437
Psp124BI	GAGCTC	1 cut(s)	256
PspFI	CCCAGC	1 cut(s)	401
PspN4I	GGNNCC	2 cut(s)	213, 708
PspPI	GGNCC	1 cut(s)	698
PvuII	CAGCTG	3 cut(s)	19, 259, 695
RsaI	GTAC	3 cut(s)	3, 358, 495
RsaNI	GTAC	3 cut(s)	2, 357, 494
SacI	GAGCTC	1 cut(s)	256
SapI	GCTCTTC	1 cut(s)	94
SaqAI	TTAA	1 cut(s)	656
Sau3AI	GATC	3 cut(s)	315, 631, 718
Sau96I	GGNCC	1 cut(s)	698
ScaI	AGTACT	1 cut(s)	495
SchI	GAGTC	3 cut(s)	93, 315, 584
ScrFI	CCNGG	1 cut(s)	728
SduI	GDGCHC	2 cut(s)	214, 256
SfaNI	GCATC	2 cut(s)	278, 547
SfuI	TTCGAA	1 cut(s)	604
SinI	GGWCC	1 cut(s)	698
SmlI	CTYRAG	2 cut(s)	109, 164
SmoI	CTYRAG	2 cut(s)	109, 164
Sse9I	AATT	3 cut(s)	267, 429, 606
SseBI	AGGCCT	2 cut(s)	56, 518
SsiI	CCGC	3 cut(s)	137, 150, 704
SspMI	CTAG	2 cut(s)	182, 425
SstI	GAGCTC	1 cut(s)	256
StuI	AGGCCT	2 cut(s)	56, 518
StyD4I	CCNGG	1 cut(s)	726
TaaI	ACNGT	2 cut(s)	305, 549
TaiI	ACGT	2 cut(s)	98, 192
TaqI	TCGA	3 cut(s)	77, 87, 604
TasI	AATT	3 cut(s)	267, 429, 606
TatI	WGTACW	2 cut(s)	356, 493
TauI	GCSGC	3 cut(s)	140, 153, 707
Tru1I	TTAA	1 cut(s)	656
Tru9I	TTAA	1 cut(s)	656
TseFI	GTSAC	1 cut(s)	66
TseI	GCWGC	9 cut(s)	16, 37, 142, 229, 239, 259, 291, 294, 692
Tsp45I	GTSAC	1 cut(s)	66
TspGWI	ACGGA	1 cut(s)	699
VpaK11BI	GGWCC	1 cut(s)	698
XagI	CCTNNNNNAGG	1 cut(s)	655
XapI	RAATTY	1 cut(s)	606
XbaI	TCTAGA	1 cut(s)	181
XceI	RCATGY	1 cut(s)	675
XspI	CTAG	2 cut(s)	182, 425
ZrmI	AGTACT	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.