Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0018893

Physical Location & Seq

Genomic Coordinates Forward (+)

7344821 .. 7346561

Gene Structure 1741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1087700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGCACGTGAAAAGATGTGAAAATTTGAAGACATTGGGTGCTGTAATTCCACAAAGAAAGAAGTTGGAGAATAACTTGAAGAAGGATTCAACAAGTCATGATTTTAGCACTTCTCCAACACGTTCATCAAATTGGTGCCCTGCTGGATGTGGATGCGCACCGTATTCAAGACCAAACGCCCACCGCCCCATTGAAATATTGCCACGTCCAATTAACCTGGAGGTTACACCAACTAATCTTGAGGACTCAAATGATGATGATAATCTCGAAAATCTTACTGTAAGTGACTGTAATTCGATGGAAGTGATTTTCCAACTCAAGGGACCGAAGCATGAAGAAAGTAGTCACTCCATTGAAGCATTCAATAAATTGAGTTCCTTGCGGTTAGATAGATTGCCAGGTTTAACGCGTGTTTGGGAGACGGGTAGTTCACAACCGATGTTGACAGGAAGCAGCTTCGGAAACTTGAAATCGCTGGAGGTTGGTTTTTGCAACCAGTTGAAATACTTGTTTTCATCGTCCATAGTCAAACTTCTCGTGAGTATAGAGGACATAGAAGTTCATAACTGTGAGAAGATGGAAGAAATCGTTGCCGCAGAAGAAGAAACTGATGAAACAATTACATTACCTAAAGTGAAGTCCATCAAGCTTGAAAGTCTGCCAAAACTCAAGTATTTTTGTGGTGAAGCTTATACTTTGAAGTTGCCGTCTTTGGAGTTATTGGAGTTTGATGACGTGCAAAACTTAAGCCTATTAGCTCCAAAGCTTATTGCCACACATCCCCGATTGCAAGTACGCACCGCGTTGGGAGTGGCTGAATGGAAGGGGGACCTCAATGCCACTCTAAGGAATATTTACGTCACAAGGACAACAATTCAAAGAAGGTTGTGGCTTCAACAATTCGTTTACCATCTCATATGTACAAACCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

311

Amino Acids

35.02

Weight (kDa)

6.27

Isoelectric Point (pI)

46.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_RPS2	PF23247	87 - 191	5.5e-23	Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2	PF23247	149 - 258	1.1e-14	Plant disease resistance protein RPS2-like, leucine-rich repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018893)

Species	Orthologous Gene IDs
malus_domestica	MD03G1081500.v1.1 MD11G1085500.v1.1 MD11G1086200.v1.1 MD11G1087700.v1.1 MD11G1088800.v1.1 MD11G1089700.v1.1 MD17G1142600.v1.1
pyrus_communis	pycom11g07410 pycom11g07450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	157
AccB1I	GGYRCC	1 cut(s)	135
AccII	CGCG	2 cut(s)	409, 803
AciI	CCGC	4 cut(s)	184, 382, 594, 801
AcsI	RAATTY	1 cut(s)	22
AcvI	CACGTG	1 cut(s)	7
AfaI	GTAC	2 cut(s)	795, 922
AfiI	CCNNNNNNNGG	2 cut(s)	319, 846
AflII	CTTAAG	1 cut(s)	745
AflIII	ACRYGT	2 cut(s)	119, 407
AjiI	CACGTC	2 cut(s)	206, 736
AjnI	CCWGG	2 cut(s)	216, 397
AluBI	AGCT	5 cut(s)	456, 649, 689, 758, 766
AluI	AGCT	5 cut(s)	456, 649, 689, 758, 766
Alw26I	GTCTC	1 cut(s)	413
ApeKI	GCWGC	1 cut(s)	453
ApoI	RAATTY	1 cut(s)	22
AspLEI	GCGC	1 cut(s)	158
AspS9I	GGNCC	2 cut(s)	323, 829
AsuHPI	GGTGA	1 cut(s)	695
AvaII	GGWCC	2 cut(s)	323, 829
BaeGI	GKGCMC	1 cut(s)	140
BanI	GGYRCC	1 cut(s)	135
BauI	CACGAG	1 cut(s)	536
BbrPI	CACGTG	1 cut(s)	7
BbsI	GAAGAC	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	465
BccI	CCATC	4 cut(s)	292, 571, 650, 918
BceAI	ACGGC	1 cut(s)	691
BciT130I	CCWGG	2 cut(s)	218, 399
BcoDI	GTCTC	1 cut(s)	413
BfrI	CTTAAG	1 cut(s)	745
BisI	GCNGC	2 cut(s)	454, 594
BlsI	GCNGC	2 cut(s)	455, 595
Bme1390I	CCNGG	2 cut(s)	218, 399
Bme18I	GGWCC	2 cut(s)	323, 829
BmgBI	CACGTC	2 cut(s)	206, 736
BmgT120I	GGNCC	2 cut(s)	323, 829
BmiI	GGNNCC	3 cut(s)	137, 324, 830
BmrFI	CCNGG	2 cut(s)	218, 399
BmsI	GCATC	1 cut(s)	143
BpiI	GAAGAC	1 cut(s)	35
BpmI	CTGGAG	2 cut(s)	239, 497
BpuEI	CTTGAG	3 cut(s)	260, 302, 653
BsaAI	YACGTR	1 cut(s)	7
BsaBI	GATNNNNATC	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	2 cut(s)	319, 846
Bse1I	ACTGG	1 cut(s)	496
Bse8I	GATNNNNATC	1 cut(s)	261
BseBI	CCWGG	2 cut(s)	218, 399
BseGI	GGATG	3 cut(s)	152, 158, 778
BseJI	GATNNNNATC	1 cut(s)	261
BseLI	CCNNNNNNNGG	2 cut(s)	319, 846
BseNI	ACTGG	1 cut(s)	496
BseSI	GKGCMC	1 cut(s)	140
BseXI	GCAGC	1 cut(s)	465
Bsh1236I	CGCG	2 cut(s)	409, 803
BshNI	GGYRCC	1 cut(s)	135
BslFI	GGGAC	2 cut(s)	336, 842
BslI	CCNNNNNNNGG	2 cut(s)	319, 846
BsmAI	GTCTC	1 cut(s)	413
BsmBI	CGTCTC	1 cut(s)	413
BsmFI	GGGAC	2 cut(s)	336, 842
BsmI	GAATGC	1 cut(s)	359
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp1407I	TGTACA	1 cut(s)	920
BspACI	CCGC	4 cut(s)	184, 382, 594, 801
BspFNI	CGCG	2 cut(s)	409, 803
BspHI	TCATGA	1 cut(s)	97
BspLI	GGNNCC	3 cut(s)	137, 324, 830
BspT107I	GGYRCC	1 cut(s)	135
BspTI	CTTAAG	1 cut(s)	745
BsrGI	TGTACA	1 cut(s)	920
BsrI	ACTGG	1 cut(s)	496
BssSI	CACGAG	1 cut(s)	536
Bst2BI	CACGAG	1 cut(s)	536
Bst2UI	CCWGG	2 cut(s)	218, 399
Bst4CI	ACNGT	4 cut(s)	162, 280, 290, 569
BstAFI	CTTAAG	1 cut(s)	745
BstAUI	TGTACA	1 cut(s)	920
BstBAI	YACGTR	1 cut(s)	7
BstDEI	CTNAG	1 cut(s)	845
BstF5I	GGATG	3 cut(s)	152, 158, 778
BstFNI	CGCG	2 cut(s)	409, 803
BstHHI	GCGC	1 cut(s)	158
BstMAI	GTCTC	1 cut(s)	413
BstNI	CCWGG	2 cut(s)	218, 399
BstSCI	CCNGG	2 cut(s)	216, 397
BstSLI	GKGCMC	1 cut(s)	140
BstUI	CGCG	2 cut(s)	409, 803
BstV1I	GCAGC	1 cut(s)	465
BstV2I	GAAGAC	1 cut(s)	35
BtrI	CACGTC	2 cut(s)	206, 736
BtsCI	GGATG	3 cut(s)	152, 158, 778
CciI	TCATGA	1 cut(s)	97
CfoI	GCGC	1 cut(s)	158
Cfr13I	GGNCC	2 cut(s)	323, 829
Csp6I	GTAC	2 cut(s)	794, 921
CviAII	CATG	2 cut(s)	98, 332
CviJI	RGCY	8 cut(s)	456, 649, 689, 750, 758, 766, 815, 892
CviKI_1	RGCY	8 cut(s)	456, 649, 689, 750, 758, 766, 815, 892
CviQI	GTAC	2 cut(s)	794, 921
DdeI	CTNAG	1 cut(s)	845
Eco47I	GGWCC	2 cut(s)	323, 829
Eco72I	CACGTG	1 cut(s)	7
EcoO109I	RGGNCCY	1 cut(s)	829
EcoRII	CCWGG	2 cut(s)	216, 397
Esp3I	CGTCTC	1 cut(s)	413
FaeI	CATG	2 cut(s)	101, 335
FaiI	YATR	9 cut(s)	99, 333, 524, 545, 554, 564, 693, 917, 919
FaqI	GGGAC	2 cut(s)	336, 842
FatI	CATG	2 cut(s)	97, 331
FauNDI	CATATG	1 cut(s)	917
Fnu4HI	GCNGC	2 cut(s)	454, 594
FokI	GGATG	3 cut(s)	159, 165, 765
Fsp4HI	GCNGC	2 cut(s)	454, 594
FspAI	RTGCGCAY	1 cut(s)	157
FspI	TGCGCA	1 cut(s)	157
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	2 cut(s)	454, 594
GsuI	CTGGAG	2 cut(s)	239, 497
HhaI	GCGC	1 cut(s)	158
Hin1II	CATG	2 cut(s)	101, 335
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HincII	GTYRAC	1 cut(s)	444
HindII	GTYRAC	1 cut(s)	444
HindIII	AAGCTT	3 cut(s)	647, 687, 764
HinfI	GANTC	2 cut(s)	86, 245
HphI	GGTGA	1 cut(s)	695
Hpy166II	GTNNAC	3 cut(s)	431, 444, 907
Hpy188I	TCNGA	1 cut(s)	461
Hpy188III	TCNNGA	5 cut(s)	98, 168, 239, 266, 538
Hpy8I	GTNNAC	3 cut(s)	431, 444, 907
HpyAV	CCTTC	3 cut(s)	76, 817, 876
HpyCH4III	ACNGT	4 cut(s)	162, 280, 290, 569
HpyCH4IV	ACGT	5 cut(s)	6, 121, 205, 735, 858
HpyCH4V	TGCA	4 cut(s)	4, 492, 739, 790
HpyF3I	CTNAG	1 cut(s)	845
HpySE526I	ACGT	5 cut(s)	6, 121, 205, 735, 858
Hsp92II	CATG	2 cut(s)	101, 335
HspAI	GCGC	1 cut(s)	156
LmnI	GCTCC	1 cut(s)	763
LpnPI	CCDG	9 cut(s)	129, 153, 203, 230, 384, 411, 432, 461, 509
Lsp1109I	GCAGC	1 cut(s)	465
LweI	GCATC	1 cut(s)	143
MaeII	ACGT	5 cut(s)	6, 121, 205, 735, 858
MaeIII	GTNAC	4 cut(s)	223, 284, 344, 859
MboII	GAAGA	7 cut(s)	40, 91, 347, 586, 593, 611, 614
MhlI	GDGCHC	1 cut(s)	140
MluCI	AATT	9 cut(s)	22, 45, 130, 210, 292, 368, 618, 873, 899
MluI	ACGCGT	1 cut(s)	407
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	3 cut(s)	45, 140, 337
MnlI	CCTC	5 cut(s)	214, 235, 472, 541, 842
MseI	TTAA	3 cut(s)	213, 404, 746
MslI	CAYNNNNRTG	1 cut(s)	567
MspCI	CTTAAG	1 cut(s)	745
MspR9I	CCNGG	2 cut(s)	218, 399
Mva1269I	GAATGC	1 cut(s)	359
MvaI	CCWGG	2 cut(s)	218, 399
MvnI	CGCG	2 cut(s)	409, 803
NdeI	CATATG	1 cut(s)	917
NlaIII	CATG	2 cut(s)	101, 335
NlaIV	GGNNCC	3 cut(s)	137, 324, 830
NmuCI	GTSAC	3 cut(s)	284, 344, 859
NsbI	TGCGCA	1 cut(s)	157
PagI	TCATGA	1 cut(s)	97
PctI	GAATGC	1 cut(s)	359
PfeI	GAWTC	1 cut(s)	86
PkrI	GCNGC	2 cut(s)	455, 595
PleI	GAGTC	1 cut(s)	239
PmaCI	CACGTG	1 cut(s)	7
PmlI	CACGTG	1 cut(s)	7
PpsI	GAGTC	1 cut(s)	239
Ppu21I	YACGTR	1 cut(s)	7
PpuMI	RGGWCCY	1 cut(s)	829
Psp5II	RGGWCCY	1 cut(s)	829
Psp6I	CCWGG	2 cut(s)	216, 397
PspCI	CACGTG	1 cut(s)	7
PspGI	CCWGG	2 cut(s)	216, 397
PspN4I	GGNNCC	3 cut(s)	137, 324, 830
PspPI	GGNCC	2 cut(s)	323, 829
PspPPI	RGGWCCY	1 cut(s)	829
RsaI	GTAC	2 cut(s)	795, 922
RsaNI	GTAC	2 cut(s)	794, 921
RseI	CAYNNNNRTG	1 cut(s)	567
SaqAI	TTAA	3 cut(s)	213, 404, 746
SatI	GCNGC	2 cut(s)	454, 594
Sau96I	GGNCC	2 cut(s)	323, 829
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	2 cut(s)	218, 399
SduI	GDGCHC	1 cut(s)	140
SfaNI	GCATC	1 cut(s)	143
SinI	GGWCC	2 cut(s)	323, 829
SmiMI	CAYNNNNRTG	1 cut(s)	567
SmlI	CTYRAG	4 cut(s)	239, 317, 668, 745
SmoI	CTYRAG	4 cut(s)	239, 317, 668, 745
Sse9I	AATT	9 cut(s)	22, 45, 130, 210, 292, 368, 618, 873, 899
SsiI	CCGC	4 cut(s)	184, 382, 594, 801
SspI	AATATT	2 cut(s)	198, 853
StyD4I	CCNGG	2 cut(s)	216, 397
TaaI	ACNGT	4 cut(s)	162, 280, 290, 569
TaiI	ACGT	5 cut(s)	9, 124, 208, 738, 861
TaqI	TCGA	2 cut(s)	267, 296
TaqII	GACCGA	1 cut(s)	340
TasI	AATT	9 cut(s)	22, 45, 130, 210, 292, 368, 618, 873, 899
TatI	WGTACW	1 cut(s)	920
TauI	GCSGC	1 cut(s)	596
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	3 cut(s)	213, 404, 746
Tru9I	TTAA	3 cut(s)	213, 404, 746
TseFI	GTSAC	3 cut(s)	284, 344, 859
TseI	GCWGC	1 cut(s)	453
Tsp45I	GTSAC	3 cut(s)	284, 344, 859
TspDTI	ATGAA	5 cut(s)	114, 348, 504, 551, 627
Vha464I	CTTAAG	1 cut(s)	745
VpaK11BI	GGWCC	2 cut(s)	323, 829
XapI	RAATTY	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.