MD11G1088800.v1.1

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0018893
Physical Location & Seq
Forward (+)
7396613 .. 7397176
564 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1088800.v1.1.491

Sequence Viewer

Length: 243 bp
ATGGAAGTGATTTTCCAACTCAAGGGACTGAAGCATGAAGAAAGTAGTCACTCCGTTGAAGCATTCAATAAATTGAGTTCCTTGCGGTTATATACATTGCCAAGTTTAACGCGTGTTTGGGAGACGGGTAGTTCACAACCGATGTTGACAGGAAGCAGCTTCGGAAACTTGAAATCGCTGCGGGTCTATTATTGCAACCAGTTGAAATACTTGTTTTCATCGTCCATAGTCAAACTAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

81

Amino Acids

9.13

Weight (kDa)

9.61

Isoelectric Point (pI)

32.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 1 - 78 3e-14 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 112
AciI CCGC 2 cut(s) 85, 181
AcuI CTGAAG 1 cut(s) 50
AfiI CCNNNNNNNGG 1 cut(s) 22
AflIII ACRYGT 1 cut(s) 110
AgsI TTSAA 4 cut(s) 59, 67, 172, 205
AluBI AGCT 1 cut(s) 159
AluI AGCT 1 cut(s) 159
Alw26I GTCTC 1 cut(s) 116
ApeKI GCWGC 2 cut(s) 156, 178
BbvI GCAGC 2 cut(s) 165, 168
BcoDI GTCTC 1 cut(s) 116
BisI GCNGC 2 cut(s) 157, 179
BlsI GCNGC 2 cut(s) 158, 180
BpuEI CTTGAG 1 cut(s) 5
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse1I ACTGG 1 cut(s) 199
Bse3DI GCAATG 1 cut(s) 95
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMI GCAATG 1 cut(s) 95
BseNI ACTGG 1 cut(s) 199
BseXI GCAGC 2 cut(s) 165, 168
Bsh1236I CGCG 1 cut(s) 112
BslFI GGGAC 1 cut(s) 39
BslI CCNNNNNNNGG 1 cut(s) 22
BsmAI GTCTC 1 cut(s) 116
BsmBI CGTCTC 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 39
BsmI GAATGC 1 cut(s) 62
BspACI CCGC 2 cut(s) 85, 181
BspFNI CGCG 1 cut(s) 112
BsrDI GCAATG 1 cut(s) 95
BsrI ACTGG 1 cut(s) 199
BstFNI CGCG 1 cut(s) 112
BstMAI GTCTC 1 cut(s) 116
BstUI CGCG 1 cut(s) 112
BstV1I GCAGC 2 cut(s) 165, 168
CviAII CATG 1 cut(s) 35
CviJI RGCY 1 cut(s) 159
CviKI_1 RGCY 1 cut(s) 159
Eco57I CTGAAG 1 cut(s) 50
Esp3I CGTCTC 1 cut(s) 116
FaeI CATG 1 cut(s) 38
FaiI YATR 4 cut(s) 36, 91, 93, 227
FaqI GGGAC 1 cut(s) 39
FatI CATG 1 cut(s) 34
FauI CCCGC 1 cut(s) 174
Fnu4HI GCNGC 2 cut(s) 157, 179
Fsp4HI GCNGC 2 cut(s) 157, 179
GluI GCNGC 2 cut(s) 157, 179
Hin1II CATG 1 cut(s) 38
HincII GTYRAC 1 cut(s) 147
HindII GTYRAC 1 cut(s) 147
Hpy166II GTNNAC 2 cut(s) 134, 147
Hpy188I TCNGA 1 cut(s) 164
Hpy8I GTNNAC 2 cut(s) 134, 147
HpyCH4V TGCA 1 cut(s) 195
Hsp92II CATG 1 cut(s) 38
LpnPI CCDG 2 cut(s) 135, 212
Lsp1109I GCAGC 2 cut(s) 165, 168
MaeIII GTNAC 1 cut(s) 47
MboII GAAGA 1 cut(s) 50
MluCI AATT 1 cut(s) 71
MluI ACGCGT 1 cut(s) 110
MmeI TCCRAC 1 cut(s) 40
MseI TTAA 1 cut(s) 107
Mva1269I GAATGC 1 cut(s) 62
MvnI CGCG 1 cut(s) 112
NlaIII CATG 1 cut(s) 38
NmuCI GTSAC 1 cut(s) 47
PctI GAATGC 1 cut(s) 62
PkrI GCNGC 2 cut(s) 158, 180
SaqAI TTAA 1 cut(s) 107
SatI GCNGC 2 cut(s) 157, 179
SetI ASST 1 cut(s) 161
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
Sse9I AATT 1 cut(s) 71
SsiI CCGC 2 cut(s) 85, 181
TasI AATT 1 cut(s) 71
Tru1I TTAA 1 cut(s) 107
Tru9I TTAA 1 cut(s) 107
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 2 cut(s) 156, 178
Tsp45I GTSAC 1 cut(s) 47
TspDTI ATGAA 2 cut(s) 51, 207
TspGWI ACGGA 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.