MD11G1096000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0014134
Physical Location & Seq
Forward (+)
7974727 .. 7976174
1448 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1096000.v1.1.491

Sequence Viewer

Length: 525 bp
ATGGGTACCACATCCATAACTCTATCCCGACCACCATCAACTTTCTCCCATTTTCTCAGGCCAAACCATTCTCAATTCCTCAGAACAACCCAGAAACCATCCTTCCCCTTATCCTCCCCAACCACCACAACCAAACGGACCCTAATTTTCAACACCCCAGATGATAATCTCACCCAAAGAAGCACCCCAACTCGGCAAATCAGTGCCACCTCTGCTGAATCTGTGCCTGCAGAAGCCGCCGTCCCACTTGAGACTGCCCAGGAGATAGTGGCCTCTAGTGACGAAGGAGTGTCTGTCGCCATTTCTGCCCTTCTCTTCGTTGCCTTTGTTGGCCTGTCCATTCTCACCATTGGGGTGATCTACCTAGGTGTGACAGATTATCTGCAGAAGAGGGAGAGAGAGAAACTAGAGAAGGATGAGGCAGATAACAAGAAGAAGGGTGGGAAGAAGAAGAGGGTGAGAGCAAGAGCTGGGCCTAAAGGATTTGGCCAAAAGATTACTATTGATGAAGAAGATGATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

19.01

Weight (kDa)

9.18

Isoelectric Point (pI)

42.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014134)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29180
fragaria_vesca FvH4_3g36880
malus_domestica MD03G1086900.v1.1 MD11G1096000.v1.1
prunus_persica Prupe.6G071500_v2.0.a1
pyrus_communis pycom03g06880 pycom11g08130
rosa_chinensis RchiOBHm_Chr5g0066101
rosa_laevigata RLG00000035842
rosa_multiflora Rmu_sc0002406.1_g000008
rosa_roxburghii Rroxscaffold_1G00014910
rosa_rugosa Rorug05G0376300
rosa_samantha Rh5AG434800 Rh5BG451100 Rh5CG473400 Rh5DG464700
rosa_wichuraiana Rw5G040720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 5
AccB1I GGYRCC 1 cut(s) 5
AciI CCGC 1 cut(s) 237
AcoI YGGCCR 1 cut(s) 487
AfaI GTAC 1 cut(s) 7
AfiI CCNNNNNNNGG 1 cut(s) 192
AgsI TTSAA 1 cut(s) 151
AjnI CCWGG 1 cut(s) 258
AluBI AGCT 1 cut(s) 470
AluI AGCT 1 cut(s) 470
Alw26I GTCTC 1 cut(s) 245
AoxI GGCC 5 cut(s) 59, 270, 331, 473, 487
Asp718I GGTACC 1 cut(s) 5
AspA2I CCTAGG 1 cut(s) 364
AspS9I GGNCC 2 cut(s) 138, 473
AsuHPI GGTGA 4 cut(s) 163, 337, 367, 469
AvaII GGWCC 1 cut(s) 138
AvrII CCTAGG 1 cut(s) 364
BalI TGGCCA 1 cut(s) 489
BanI GGYRCC 1 cut(s) 5
BccI CCATC 2 cut(s) 43, 106
BceAI ACGGC 1 cut(s) 224
BciT130I CCWGG 1 cut(s) 260
BcoDI GTCTC 1 cut(s) 245
BfaI CTAG 3 cut(s) 276, 365, 407
BfmI CTRYAG 2 cut(s) 228, 383
BisI GCNGC 1 cut(s) 237
BlnI CCTAGG 1 cut(s) 364
BlsI GCNGC 1 cut(s) 238
Bme1390I CCNGG 1 cut(s) 260
Bme18I GGWCC 1 cut(s) 138
BmgT120I GGNCC 2 cut(s) 138, 473
BmiI GGNNCC 2 cut(s) 7, 140
BmrFI CCNGG 1 cut(s) 260
BpuEI CTTGAG 1 cut(s) 269
BsaBI GATNNNNATC 1 cut(s) 165
BsaJI CCNNGG 2 cut(s) 258, 364
BsaXI ACNNNNNCTCC 2 cut(s) 279, 309
Bsc4I CCNNNNNNNGG 1 cut(s) 192
Bse8I GATNNNNATC 1 cut(s) 165
BseBI CCWGG 1 cut(s) 260
BseDI CCNNGG 2 cut(s) 258, 364
BseGI GGATG 3 cut(s) 11, 98, 421
BseJI GATNNNNATC 1 cut(s) 165
BseLI CCNNNNNNNGG 1 cut(s) 192
BseMII CTCAG 2 cut(s) 70, 94
BseYI CCCAGC 1 cut(s) 470
BshFI GGCC 5 cut(s) 61, 272, 333, 475, 489
BshNI GGYRCC 1 cut(s) 5
BslFI GGGAC 1 cut(s) 227
BslI CCNNNNNNNGG 1 cut(s) 192
BsmAI GTCTC 1 cut(s) 245
BsmFI GGGAC 1 cut(s) 227
BsnI GGCC 5 cut(s) 61, 272, 333, 475, 489
Bsp143I GATC 1 cut(s) 357
BspACI CCGC 1 cut(s) 237
BspANI GGCC 5 cut(s) 61, 272, 333, 475, 489
BspCNI CTCAG 2 cut(s) 69, 93
BspLI GGNNCC 2 cut(s) 7, 140
BspMAI CTGCAG 2 cut(s) 232, 387
BspT107I GGYRCC 1 cut(s) 5
BssECI CCNNGG 2 cut(s) 258, 364
BssMI GATC 1 cut(s) 357
BssT1I CCWWGG 1 cut(s) 364
Bst2UI CCWGG 1 cut(s) 260
Bst6I CTCTTC 3 cut(s) 320, 383, 446
BstC8I GCNNGC 1 cut(s) 228
BstDEI CTNAG 2 cut(s) 56, 80
BstF5I GGATG 3 cut(s) 11, 98, 421
BstKTI GATC 1 cut(s) 360
BstMAI GTCTC 1 cut(s) 245
BstMBI GATC 1 cut(s) 357
BstMWI GCNNNNNNNGC 3 cut(s) 212, 236, 305
BstNI CCWGG 1 cut(s) 260
BstSCI CCNGG 1 cut(s) 258
BstSFI CTRYAG 2 cut(s) 228, 383
BsuRI GGCC 5 cut(s) 61, 272, 333, 475, 489
BtsCI GGATG 3 cut(s) 11, 98, 421
BtsIMutI CAGTG 1 cut(s) 208
Cac8I GCNNGC 1 cut(s) 228
Cfr13I GGNCC 2 cut(s) 138, 473
Csp6I GTAC 1 cut(s) 6
CviJI RGCY 7 cut(s) 61, 236, 272, 333, 470, 475, 489
CviKI_1 RGCY 7 cut(s) 61, 236, 272, 333, 470, 475, 489
CviQI GTAC 1 cut(s) 6
DdeI CTNAG 2 cut(s) 56, 80
DpnI GATC 1 cut(s) 359
DpnII GATC 1 cut(s) 357
EaeI YGGCCR 1 cut(s) 487
Eam1104I CTCTTC 3 cut(s) 320, 383, 446
EarI CTCTTC 3 cut(s) 320, 383, 446
Eco130I CCWWGG 1 cut(s) 364
Eco47I GGWCC 1 cut(s) 138
EcoRII CCWGG 1 cut(s) 258
EcoT14I CCWWGG 1 cut(s) 364
ErhI CCWWGG 1 cut(s) 364
FaiI YATR 1 cut(s) 17
FaqI GGGAC 1 cut(s) 227
Fnu4HI GCNGC 1 cut(s) 237
FokI GGATG 2 cut(s) 85, 428
Fsp4HI GCNGC 1 cut(s) 237
FspBI CTAG 3 cut(s) 276, 365, 407
GluI GCNGC 1 cut(s) 237
GsaI CCCAGC 1 cut(s) 474
HaeIII GGCC 5 cut(s) 61, 272, 333, 475, 489
HinfI GANTC 1 cut(s) 218
HphI GGTGA 4 cut(s) 163, 337, 367, 469
Hpy188I TCNGA 1 cut(s) 83
Hpy188III TCNNGA 1 cut(s) 27
HpyAV CCTTC 5 cut(s) 112, 278, 320, 406, 430
HpyCH4V TGCA 2 cut(s) 230, 385
HpyF10VI GCNNNNNNNGC 3 cut(s) 212, 236, 305
HpyF3I CTNAG 2 cut(s) 56, 80
KpnI GGTACC 1 cut(s) 9
Kzo9I GATC 1 cut(s) 357
LpnPI CCDG 8 cut(s) 43, 104, 171, 240, 245, 272, 347, 456
MaeI CTAG 3 cut(s) 276, 365, 407
MaeIII GTNAC 2 cut(s) 278, 370
MalI GATC 1 cut(s) 359
MboI GATC 1 cut(s) 357
MboII GAAGA 8 cut(s) 307, 400, 445, 457, 460, 463, 521, 524
MlsI TGGCCA 1 cut(s) 489
MluCI AATT 2 cut(s) 74, 144
MluNI TGGCCA 1 cut(s) 489
MnlI CCTC 7 cut(s) 89, 124, 220, 283, 384, 412, 447
Mox20I TGGCCA 1 cut(s) 489
MscI TGGCCA 1 cut(s) 489
MslI CAYNNNNRTG 1 cut(s) 353
Msp20I TGGCCA 1 cut(s) 489
MspR9I CCNGG 1 cut(s) 260
MvaI CCWGG 1 cut(s) 260
MwoI GCNNNNNNNGC 3 cut(s) 212, 236, 305
NdeII GATC 1 cut(s) 357
NlaIV GGNNCC 2 cut(s) 7, 140
NmeAIII GCCGAG 1 cut(s) 172
NmuCI GTSAC 2 cut(s) 278, 370
PfeI GAWTC 1 cut(s) 218
PkrI GCNGC 1 cut(s) 238
Psp6I CCWGG 1 cut(s) 258
PspFI CCCAGC 1 cut(s) 470
PspGI CCWGG 1 cut(s) 258
PspN4I GGNNCC 2 cut(s) 7, 140
PspPI GGNCC 2 cut(s) 138, 473
PstI CTGCAG 2 cut(s) 232, 387
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
RseI CAYNNNNRTG 1 cut(s) 353
SatI GCNGC 1 cut(s) 237
Sau3AI GATC 1 cut(s) 357
Sau96I GGNCC 2 cut(s) 138, 473
ScrFI CCNGG 1 cut(s) 260
SetI ASST 4 cut(s) 212, 366, 370, 472
SfcI CTRYAG 2 cut(s) 228, 383
SinI GGWCC 1 cut(s) 138
SmiMI CAYNNNNRTG 1 cut(s) 353
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 2 cut(s) 74, 144
SsiI CCGC 1 cut(s) 237
SspMI CTAG 3 cut(s) 276, 365, 407
StyD4I CCNGG 1 cut(s) 258
StyI CCWWGG 1 cut(s) 364
TasI AATT 2 cut(s) 74, 144
TauI GCSGC 1 cut(s) 239
TfiI GAWTC 1 cut(s) 218
TscAI CASTG 1 cut(s) 208
TseFI GTSAC 2 cut(s) 278, 370
Tsp45I GTSAC 2 cut(s) 278, 370
TspDTI ATGAA 1 cut(s) 522
TspGWI ACGGA 1 cut(s) 151
TspRI CASTG 1 cut(s) 208
VpaK11BI GGWCC 1 cut(s) 138
XmaJI CCTAGG 1 cut(s) 364
XspI CTAG 3 cut(s) 276, 365, 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.