Rorug05G0376300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0014134
Physical Location & Seq
Forward (+)
50836824 .. 50840111
3288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0376300.1

Sequence Viewer

Length: 657 bp
ATGGTGGGGGCTTTATCTGTGATGGGTTCATCTGTGGTGGACTCACACACATGTCCATGCTTGTGCTTGGATGCTCTGCCTACAACTGCCATGAATCTCAAGAGTGGAGGAGAACAGAGGAACTCAATGGCCAAGAAGCATTTAGTGAAACCAGGAGGGTCTTTGGAGTTGAGCAGTTCATTCATTGATTCAGGCCATGACAGGTGGCTCTCCATGAAAGCTCTTCCGGGTATGAGGAGGAAACGAAAGAATCGAAACTTCGTGATTGTTAATGAGCTTGCAGGCCAATATGAGGACAGCTTTGAGGATGTTAAGACGCAATTACTCAACTATTTTACATACAAGGCTGTGAGGACTGTCATGAACCAGCTTTATGAGATGAACCCAACACAATATAGGTGGCTTTATGACTTTGTTGTATCAAACAAGCCTGGAGATGGTAAGCGGTTCCTCCGCACGCTTGGGAAGGAGAGGCATGAACTTGCTGAGAGAGTAATGGTCACACGGCTTCACCTCTATGGTAAATGGGTCAAGAAATGTAATCATGCTGAAATATATCAAGAAATCTCTAATGAGAACTTGGAGTTGATGCGTGAACGGCTTTTTGAGACTGTGATATGGCCCTCAGATGACTCAAACACAGAGAAGATTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

218

Amino Acids

25.09

Weight (kDa)

8.97

Isoelectric Point (pI)

33.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RbcX PF02341 104 - 202 5.9e-19 RbcX protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014134)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29180
fragaria_vesca FvH4_3g36880
malus_domestica MD03G1086900.v1.1 MD11G1096000.v1.1
prunus_persica Prupe.6G071500_v2.0.a1
pyrus_communis pycom03g06880 pycom11g08130
rosa_chinensis RchiOBHm_Chr5g0066101
rosa_laevigata RLG00000035842
rosa_multiflora Rmu_sc0002406.1_g000008
rosa_roxburghii Rroxscaffold_1G00014910
rosa_rugosa Rorug05G0376300
rosa_samantha Rh5AG434800 Rh5BG451100 Rh5CG473400 Rh5DG464700
rosa_wichuraiana Rw5G040720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 445, 454
AcoI YGGCCR 1 cut(s) 129
AfiI CCNNNNNNNGG 2 cut(s) 292, 437
AflIII ACRYGT 1 cut(s) 50
AjnI CCWGG 2 cut(s) 151, 430
AluBI AGCT 4 cut(s) 221, 277, 300, 370
AluI AGCT 4 cut(s) 221, 277, 300, 370
Alw26I GTCTC 1 cut(s) 602
AoxI GGCC 4 cut(s) 129, 193, 283, 620
AspS9I GGNCC 1 cut(s) 621
AsuC2I CCSGG 1 cut(s) 228
AsuHPI GGTGA 1 cut(s) 503
BalI TGGCCA 1 cut(s) 131
BccI CCATC 2 cut(s) 16, 431
BceAI ACGGC 2 cut(s) 521, 614
BciT130I CCWGG 2 cut(s) 153, 432
BcnI CCSGG 1 cut(s) 228
BcoDI GTCTC 1 cut(s) 602
Bme1390I CCNGG 3 cut(s) 153, 228, 432
BmgT120I GGNCC 1 cut(s) 621
BmiI GGNNCC 1 cut(s) 449
BmrFI CCNGG 3 cut(s) 153, 228, 432
BmsI GCATC 2 cut(s) 61, 579
BpmI CTGGAG 1 cut(s) 453
BpuEI CTTGAG 1 cut(s) 83
BpuMI CCSGG 1 cut(s) 228
Bsc4I CCNNNNNNNGG 2 cut(s) 292, 437
BseBI CCWGG 2 cut(s) 153, 432
BseGI GGATG 2 cut(s) 76, 313
BseLI CCNNNNNNNGG 2 cut(s) 292, 437
BseMII CTCAG 2 cut(s) 477, 639
BseRI GAGGAG 2 cut(s) 123, 250
BshFI GGCC 4 cut(s) 131, 195, 285, 622
BsiSI CCGG 1 cut(s) 227
BslI CCNNNNNNNGG 2 cut(s) 292, 437
BsmAI GTCTC 1 cut(s) 602
BsnI GGCC 4 cut(s) 131, 195, 285, 622
BspACI CCGC 2 cut(s) 445, 454
BspANI GGCC 4 cut(s) 131, 195, 285, 622
BspCNI CTCAG 2 cut(s) 478, 638
BspHI TCATGA 1 cut(s) 360
BspLI GGNNCC 1 cut(s) 449
BspQI GCTCTTC 1 cut(s) 228
Bst2UI CCWGG 2 cut(s) 153, 432
Bst4CI ACNGT 2 cut(s) 358, 613
Bst6I CTCTTC 1 cut(s) 228
BstC8I GCNNGC 3 cut(s) 279, 283, 458
BstDEI CTNAG 2 cut(s) 486, 625
BstF5I GGATG 2 cut(s) 76, 313
BstMAI GTCTC 1 cut(s) 602
BstMWI GCNNNNNNNGC 1 cut(s) 598
BstNI CCWGG 2 cut(s) 153, 432
BstNSI RCATGY 1 cut(s) 54
BstSCI CCNGG 3 cut(s) 151, 226, 430
BsuRI GGCC 4 cut(s) 131, 195, 285, 622
BtsCI GGATG 2 cut(s) 76, 313
Cac8I GCNNGC 3 cut(s) 279, 283, 458
CciI TCATGA 1 cut(s) 360
Cfr13I GGNCC 1 cut(s) 621
CseI GACGC 1 cut(s) 325
CspCI CAANNNNNGTGG 2 cut(s) 380, 415
CviAII CATG 8 cut(s) 51, 57, 91, 197, 214, 361, 476, 545
DdeI CTNAG 2 cut(s) 486, 625
EaeI YGGCCR 1 cut(s) 129
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
EcoRII CCWGG 2 cut(s) 151, 430
FaeI CATG 8 cut(s) 54, 60, 94, 200, 217, 364, 479, 548
FatI CATG 8 cut(s) 50, 56, 90, 196, 213, 360, 475, 544
FokI GGATG 2 cut(s) 83, 320
GsuI CTGGAG 1 cut(s) 453
HaeIII GGCC 4 cut(s) 131, 195, 285, 622
HapII CCGG 1 cut(s) 227
HgaI GACGC 1 cut(s) 325
Hin1II CATG 8 cut(s) 54, 60, 94, 200, 217, 364, 479, 548
HinfI GANTC 5 cut(s) 41, 94, 188, 250, 632
HpaII CCGG 1 cut(s) 227
HphI GGTGA 1 cut(s) 503
Hpy166II GTNNAC 2 cut(s) 40, 596
Hpy188I TCNGA 1 cut(s) 628
Hpy188III TCNNGA 5 cut(s) 100, 262, 361, 532, 560
Hpy8I GTNNAC 2 cut(s) 40, 596
HpyAV CCTTC 1 cut(s) 460
HpyCH4III ACNGT 2 cut(s) 358, 613
HpyCH4V TGCA 1 cut(s) 281
HpyF10VI GCNNNNNNNGC 1 cut(s) 598
HpyF3I CTNAG 2 cut(s) 486, 625
Hsp92II CATG 8 cut(s) 54, 60, 94, 200, 217, 364, 479, 548
LguI GCTCTTC 1 cut(s) 228
LpnPI CCDG 9 cut(s) 138, 165, 177, 187, 240, 267, 380, 417, 444
LweI GCATC 2 cut(s) 61, 579
MaeIII GTNAC 1 cut(s) 499
MboII GAAGA 1 cut(s) 215
MlsI TGGCCA 1 cut(s) 131
MluCI AATT 1 cut(s) 320
MluNI TGGCCA 1 cut(s) 131
MlyI GAGTC 2 cut(s) 35, 626
Mox20I TGGCCA 1 cut(s) 131
MscI TGGCCA 1 cut(s) 131
MseI TTAA 2 cut(s) 270, 312
MslI CAYNNNNRTG 4 cut(s) 49, 55, 61, 516
Msp20I TGGCCA 1 cut(s) 131
MspI CCGG 1 cut(s) 227
MspR9I CCNGG 3 cut(s) 153, 228, 432
MvaI CCWGG 2 cut(s) 153, 432
MwoI GCNNNNNNNGC 1 cut(s) 598
NciI CCSGG 1 cut(s) 228
NlaIII CATG 8 cut(s) 54, 60, 94, 200, 217, 364, 479, 548
NlaIV GGNNCC 1 cut(s) 449
NmuCI GTSAC 1 cut(s) 499
NspI RCATGY 1 cut(s) 54
PagI TCATGA 1 cut(s) 360
PciI ACATGT 1 cut(s) 50
PciSI GCTCTTC 1 cut(s) 228
PcsI WCGNNNNNNNCGW 1 cut(s) 250
PfeI GAWTC 3 cut(s) 94, 188, 250
PleI GAGTC 2 cut(s) 35, 626
PpsI GAGTC 2 cut(s) 35, 626
PscI ACATGT 1 cut(s) 50
Psp6I CCWGG 2 cut(s) 151, 430
PspGI CCWGG 2 cut(s) 151, 430
PspN4I GGNNCC 1 cut(s) 449
PspPI GGNCC 1 cut(s) 621
RseI CAYNNNNRTG 4 cut(s) 49, 55, 61, 516
SapI GCTCTTC 1 cut(s) 228
SaqAI TTAA 2 cut(s) 270, 312
Sau96I GGNCC 1 cut(s) 621
SchI GAGTC 2 cut(s) 35, 626
ScrFI CCNGG 3 cut(s) 153, 228, 432
SetI ASST 7 cut(s) 206, 223, 279, 302, 372, 401, 516
SfaNI GCATC 2 cut(s) 61, 579
SmiMI CAYNNNNRTG 4 cut(s) 49, 55, 61, 516
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
Sse9I AATT 1 cut(s) 320
SsiI CCGC 2 cut(s) 445, 454
StyD4I CCNGG 3 cut(s) 151, 226, 430
TaaI ACNGT 2 cut(s) 358, 613
TaqI TCGA 1 cut(s) 253
TasI AATT 1 cut(s) 320
TfiI GAWTC 3 cut(s) 94, 188, 250
Tru1I TTAA 2 cut(s) 270, 312
Tru9I TTAA 2 cut(s) 270, 312
TseFI GTSAC 1 cut(s) 499
Tsp45I GTSAC 1 cut(s) 499
TspDTI ATGAA 8 cut(s) 18, 107, 168, 172, 230, 377, 395, 492
XceI RCATGY 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.