MD11G1100100.v1.1

Xyloglucan galactosyltransferase KATAMARI1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0015061
Physical Location & Seq
Reverse (-)
8347478 .. 8348299
822 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1100100.v1.1.491

Sequence Viewer

Length: 822 bp
ATGTGTGAGCTCGCATCAAACTTTGGTCTTGGTCCCCATCTTTCGAATTTTGAAAAAGTTTACTCAAACACTGGTTGGTTTGCTACAAATTGTTTGACAAAAAACTCATCCCTAGCTTCAGCCATTTTCGTACCTTATTACGCTGGCCTAGACGTCGCACGCTACCTTTGGGGACCGAGCATTTCCATGAGAGATTCTGGCTCGCTTGAGATTGCGAAATGGCTGAGGGAAAAACCAGAGTGGAAGAAAATGTGGGGGAGAGATCATTTTATGGTGGCAGGAAGAATTACTTGGGATTTTCGGAGATGGACTGACAAGGATTCGGAGTGGGGAACGAAGCTTATGCTCTTGCCCGAATCGAAAAACATGACAATGTTGGCAATGGAATCCAGCCCTTGGAACAGCAATGACTTTGCCATACCATATCCAACGTACTTCCACCCTTCAAAAGACATTGAGGTGTTCCAATGGCAGAACCGAATGAGGAAGCAGAAGCGGCCCATATTGTTCTCCTTCGCTGGAGGCCCTAGACCTAATCTCCAAAACTCAATCCGCAACGAAATCATAGACCAATGCAGGGCAGCAAGGAGAAAATGCAAGCTCCTAGAATGCACATCCGGTCCGGACAAGTGCCACAAGCCGATTTTTGTCATGAAAATGTTCCAAGGCTCCGTCTTCTGCCTGCAGCCTCCCGGGGACTCTCTAACCCGAAGATCAATCTTCGATTCAATCCTCGCAGGCTGCATTCCTGTGTTCTTCCACCCAGGGTCCGCGTACGTTCAATACCTATGGCATCTCCCCAAGGACTACACCAAATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

274

Amino Acids

31.68

Weight (kDa)

9.36

Isoelectric Point (pI)

49.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 30 - 273 3e-69 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015061)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29040
fragaria_vesca FvH4_3g36470
malus_domestica MD03G1090400.v1.1 MD11G1100100.v1.1
prunus_persica Prupe.6G074500_v2.0.a1
pyrus_communis pycom11g08430
rosa_chinensis RchiOBHm_Chr5g0065321
rosa_laevigata RLG00000035783
rosa_multiflora Rmu_sc0010875.1_g000002
rosa_roxburghii Rroxscaffold_1G00015860
rosa_rugosa Rorug05G0371200
rosa_samantha Rh5AG429100 Rh5BG444400 Rh5CG466700 Rh5DG456700
rosa_wichuraiana Rw5G040280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 156
AccB7I CCANNNNNTGG 1 cut(s) 396
AccII CGCG 1 cut(s) 773
AccIII TCCGGA 1 cut(s) 622
AciI CCGC 3 cut(s) 496, 553, 771
AcsI RAATTY 1 cut(s) 46
AcuI CTGAAG 1 cut(s) 102
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 3 cut(s) 132, 434, 776
AfiI CCNNNNNNNGG 2 cut(s) 396, 577
AgsI TTSAA 4 cut(s) 53, 447, 729, 782
AjnI CCWGG 1 cut(s) 763
AjuI GAANNNNNNNTTGG 2 cut(s) 274, 306
AluBI AGCT 4 cut(s) 10, 116, 340, 601
AluI AGCT 4 cut(s) 10, 116, 340, 601
Alw21I GWGCWC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 692
Aor13HI TCCGGA 1 cut(s) 622
AoxI GGCC 3 cut(s) 145, 497, 523
ApeKI GCWGC 3 cut(s) 581, 685, 741
ApoI RAATTY 1 cut(s) 46
Asp700I GAANNNNTTC 1 cut(s) 659
AspS9I GGNCC 6 cut(s) 32, 173, 498, 524, 620, 768
AsuC2I CCSGG 2 cut(s) 693, 694
AsuII TTCGAA 1 cut(s) 44
AvaI CYCGRG 1 cut(s) 692
AvaII GGWCC 4 cut(s) 32, 173, 620, 768
BanII GRGCYC 1 cut(s) 12
BbsI GAAGAC 1 cut(s) 667
Bbv12I GWGCWC 1 cut(s) 12
BbvCI CCTCAGC 1 cut(s) 224
BbvI GCAGC 3 cut(s) 593, 697, 728
BccI CCATC 2 cut(s) 45, 300
BcgI CGANNNNNNTGC 2 cut(s) 325, 359
BciT130I CCWGG 1 cut(s) 765
BcnI CCSGG 2 cut(s) 693, 694
BfaI CTAG 4 cut(s) 113, 149, 528, 605
BfmI CTRYAG 1 cut(s) 683
BisI GCNGC 4 cut(s) 497, 582, 686, 742
BlsI GCNGC 4 cut(s) 498, 583, 687, 743
Bme1390I CCNGG 3 cut(s) 693, 694, 765
Bme18I GGWCC 4 cut(s) 32, 173, 620, 768
BmeT110I CYCGRG 1 cut(s) 692
BmgT120I GGNCC 6 cut(s) 32, 173, 498, 524, 620, 768
BmiI GGNNCC 4 cut(s) 34, 174, 670, 769
BmrFI CCNGG 3 cut(s) 693, 694, 765
BmsI GCATC 2 cut(s) 23, 802
BpiI GAAGAC 1 cut(s) 667
BpmI CTGGAG 1 cut(s) 540
Bpu10I CCTNAGC 1 cut(s) 224
Bpu14I TTCGAA 1 cut(s) 44
BpuEI CTTGAG 1 cut(s) 227
BpuMI CCSGG 2 cut(s) 693, 694
BsaHI GRCGYC 1 cut(s) 153
BsaJI CCNNGG 7 cut(s) 395, 664, 692, 693, 763, 764, 801
BsaWI WCCGGW 2 cut(s) 617, 622
BsaXI ACNNNNNCTCC 2 cut(s) 522, 552
Bsc4I CCNNNNNNNGG 2 cut(s) 396, 577
Bse1I ACTGG 1 cut(s) 76
Bse3DI GCAATG 2 cut(s) 387, 412
BseAI TCCGGA 1 cut(s) 622
BseBI CCWGG 1 cut(s) 765
BseDI CCNNGG 7 cut(s) 395, 664, 692, 693, 763, 764, 801
BseGI GGATG 2 cut(s) 107, 614
BseLI CCNNNNNNNGG 2 cut(s) 396, 577
BseMI GCAATG 2 cut(s) 387, 412
BseMII CTCAG 1 cut(s) 215
BseNI ACTGG 1 cut(s) 76
BseXI GCAGC 3 cut(s) 593, 697, 728
Bsh1236I CGCG 1 cut(s) 773
BshFI GGCC 3 cut(s) 147, 499, 525
BsiHKAI GWGCWC 1 cut(s) 12
BsiHKCI CYCGRG 1 cut(s) 692
BsiSI CCGG 3 cut(s) 618, 623, 693
BsiWI CGTACG 1 cut(s) 774
BslFI GGGAC 3 cut(s) 18, 186, 710
BslI CCNNNNNNNGG 2 cut(s) 396, 577
BsmFI GGGAC 3 cut(s) 18, 186, 710
BsmI GAATGC 2 cut(s) 614, 744
BsnI GGCC 3 cut(s) 147, 499, 525
BsoBI CYCGRG 1 cut(s) 692
Bsp119I TTCGAA 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 12
Bsp13I TCCGGA 1 cut(s) 622
Bsp143I GATC 2 cut(s) 262, 713
BspACI CCGC 3 cut(s) 496, 553, 771
BspANI GGCC 3 cut(s) 147, 499, 525
BspCNI CTCAG 1 cut(s) 216
BspEI TCCGGA 1 cut(s) 622
BspFNI CGCG 1 cut(s) 773
BspHI TCATGA 1 cut(s) 651
BspLI GGNNCC 4 cut(s) 34, 174, 670, 769
BspMAI CTGCAG 1 cut(s) 687
BspT104I TTCGAA 1 cut(s) 44
BsrDI GCAATG 2 cut(s) 387, 412
BsrI ACTGG 1 cut(s) 76
BssECI CCNNGG 7 cut(s) 395, 664, 692, 693, 763, 764, 801
BssMI GATC 2 cut(s) 262, 713
BssNI GRCGYC 1 cut(s) 153
BssT1I CCWWGG 3 cut(s) 395, 664, 801
Bst2UI CCWGG 1 cut(s) 765
BstACI GRCGYC 1 cut(s) 153
BstBI TTCGAA 1 cut(s) 44
BstC8I GCNNGC 7 cut(s) 12, 145, 160, 203, 599, 683, 739
BstDEI CTNAG 1 cut(s) 224
BstF5I GGATG 2 cut(s) 107, 614
BstFNI CGCG 1 cut(s) 773
BstKTI GATC 2 cut(s) 265, 716
BstMBI GATC 2 cut(s) 262, 713
BstMWI GCNNNNNNNGC 1 cut(s) 496
BstNI CCWGG 1 cut(s) 765
BstSCI CCNGG 3 cut(s) 691, 692, 763
BstSFI CTRYAG 1 cut(s) 683
BstUI CGCG 1 cut(s) 773
BstV1I GCAGC 3 cut(s) 593, 697, 728
BstV2I GAAGAC 1 cut(s) 667
BsuRI GGCC 3 cut(s) 147, 499, 525
BtsCI GGATG 2 cut(s) 107, 614
BtsIMutI CAGTG 1 cut(s) 69
Cac8I GCNNGC 7 cut(s) 12, 145, 160, 203, 599, 683, 739
CciI TCATGA 1 cut(s) 651
Cfr13I GGNCC 6 cut(s) 32, 173, 498, 524, 620, 768
Cfr9I CCCGGG 1 cut(s) 692
CpoI CGGWCCG 1 cut(s) 620
Csp6I GTAC 3 cut(s) 131, 433, 775
CspI CGGWCCG 1 cut(s) 620
CviAII CATG 3 cut(s) 187, 367, 652
CviQI GTAC 3 cut(s) 131, 433, 775
DdeI CTNAG 1 cut(s) 224
DpnI GATC 2 cut(s) 264, 715
DpnII GATC 2 cut(s) 262, 713
Ecl136II GAGCTC 1 cut(s) 10
Eco130I CCWWGG 3 cut(s) 395, 664, 801
Eco24I GRGCYC 1 cut(s) 12
Eco47I GGWCC 4 cut(s) 32, 173, 620, 768
Eco53kI GAGCTC 1 cut(s) 10
Eco57I CTGAAG 1 cut(s) 102
Eco88I CYCGRG 1 cut(s) 692
EcoICRI GAGCTC 1 cut(s) 10
EcoO109I RGGNCCY 1 cut(s) 524
EcoRII CCWGG 1 cut(s) 763
EcoT14I CCWWGG 3 cut(s) 395, 664, 801
EcoT38I GRGCYC 1 cut(s) 12
ErhI CCWWGG 3 cut(s) 395, 664, 801
FaeI CATG 3 cut(s) 190, 370, 655
FalI AAGNNNNNCTT 2 cut(s) 274, 306
FaqI GGGAC 3 cut(s) 18, 186, 710
FatI CATG 3 cut(s) 186, 366, 651
Fnu4HI GCNGC 4 cut(s) 497, 582, 686, 742
FokI GGATG 2 cut(s) 94, 601
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 4 cut(s) 497, 582, 686, 742
FspBI CTAG 4 cut(s) 113, 149, 528, 605
GluI GCNGC 4 cut(s) 497, 582, 686, 742
GsuI CTGGAG 1 cut(s) 540
HaeIII GGCC 3 cut(s) 147, 499, 525
HapII CCGG 3 cut(s) 618, 623, 693
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 3 cut(s) 190, 370, 655
HindIII AAGCTT 1 cut(s) 338
HinfI GANTC 6 cut(s) 194, 320, 356, 386, 698, 725
HpaII CCGG 3 cut(s) 618, 623, 693
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 2 cut(s) 303, 325
Hpy188III TCNNGA 2 cut(s) 623, 652
Hpy8I GTNNAC 1 cut(s) 61
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 2 cut(s) 453, 523
HpyCH4IV ACGT 3 cut(s) 153, 431, 777
HpyCH4V TGCA 5 cut(s) 576, 597, 612, 685, 744
HpyF10VI GCNNNNNNNGC 1 cut(s) 496
HpyF3I CTNAG 1 cut(s) 224
HpySE526I ACGT 3 cut(s) 153, 431, 777
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 3 cut(s) 190, 370, 655
Kpn2I TCCGGA 1 cut(s) 622
Kzo9I GATC 2 cut(s) 262, 713
LmnI GCTCC 2 cut(s) 606, 674
Lsp1109I GCAGC 3 cut(s) 593, 697, 728
LweI GCATC 2 cut(s) 23, 802
MaeI CTAG 4 cut(s) 113, 149, 528, 605
MaeII ACGT 3 cut(s) 153, 431, 777
MalI GATC 2 cut(s) 264, 715
MboI GATC 2 cut(s) 262, 713
MboII GAAGA 6 cut(s) 256, 294, 667, 712, 723, 748
MhlI GDGCHC 1 cut(s) 12
MluCI AATT 3 cut(s) 46, 88, 285
MlyI GAGTC 1 cut(s) 692
MmeI TCCRAC 1 cut(s) 452
MnlI CCTC 6 cut(s) 219, 451, 477, 515, 699, 743
MroI TCCGGA 1 cut(s) 622
MroXI GAANNNNTTC 1 cut(s) 659
MslI CAYNNNNRTG 5 cut(s) 185, 371, 458, 656, 749
MspI CCGG 3 cut(s) 618, 623, 693
MspR9I CCNGG 3 cut(s) 693, 694, 765
Mva1269I GAATGC 2 cut(s) 614, 744
MvaI CCWGG 1 cut(s) 765
MvnI CGCG 1 cut(s) 773
MwoI GCNNNNNNNGC 1 cut(s) 496
NciI CCSGG 2 cut(s) 693, 694
NdeII GATC 2 cut(s) 262, 713
NlaIII CATG 3 cut(s) 190, 370, 655
NlaIV GGNNCC 4 cut(s) 34, 174, 670, 769
NspV TTCGAA 1 cut(s) 44
PagI TCATGA 1 cut(s) 651
PasI CCCWGGG 1 cut(s) 764
PctI GAATGC 2 cut(s) 614, 744
PdmI GAANNNNTTC 1 cut(s) 659
PfeI GAWTC 5 cut(s) 194, 320, 356, 386, 725
Pfl23II CGTACG 1 cut(s) 774
PflMI CCANNNNNTGG 1 cut(s) 396
PkrI GCNGC 4 cut(s) 498, 583, 687, 743
PleI GAGTC 1 cut(s) 692
PpsI GAGTC 1 cut(s) 692
Psp124BI GAGCTC 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 763
PspGI CCWGG 1 cut(s) 763
PspLI CGTACG 1 cut(s) 774
PspN4I GGNNCC 4 cut(s) 34, 174, 670, 769
PspPI GGNCC 6 cut(s) 32, 173, 498, 524, 620, 768
PstI CTGCAG 1 cut(s) 687
RsaI GTAC 3 cut(s) 132, 434, 776
RsaNI GTAC 3 cut(s) 131, 433, 775
RseI CAYNNNNRTG 5 cut(s) 185, 371, 458, 656, 749
Rsr2I CGGWCCG 1 cut(s) 620
RsrII CGGWCCG 1 cut(s) 620
SacI GAGCTC 1 cut(s) 12
SatI GCNGC 4 cut(s) 497, 582, 686, 742
Sau3AI GATC 2 cut(s) 262, 713
Sau96I GGNCC 6 cut(s) 32, 173, 498, 524, 620, 768
SchI GAGTC 1 cut(s) 692
ScrFI CCNGG 3 cut(s) 693, 694, 765
SduI GDGCHC 1 cut(s) 12
SfaNI GCATC 2 cut(s) 23, 802
SfcI CTRYAG 1 cut(s) 683
SfuI TTCGAA 1 cut(s) 44
SinI GGWCC 4 cut(s) 32, 173, 620, 768
SmaI CCCGGG 1 cut(s) 694
SmiMI CAYNNNNRTG 5 cut(s) 185, 371, 458, 656, 749
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 3 cut(s) 46, 88, 285
SsiI CCGC 3 cut(s) 496, 553, 771
SspMI CTAG 4 cut(s) 113, 149, 528, 605
SstI GAGCTC 1 cut(s) 12
StyD4I CCNGG 3 cut(s) 691, 692, 763
StyI CCWWGG 3 cut(s) 395, 664, 801
TaiI ACGT 3 cut(s) 156, 434, 780
TaqI TCGA 3 cut(s) 44, 359, 723
TaqII GACCGA 1 cut(s) 190
TasI AATT 3 cut(s) 46, 88, 285
TauI GCSGC 1 cut(s) 499
TfiI GAWTC 5 cut(s) 194, 320, 356, 386, 725
TscAI CASTG 1 cut(s) 76
TseI GCWGC 3 cut(s) 581, 685, 741
TspDTI ATGAA 1 cut(s) 668
TspGWI ACGGA 1 cut(s) 661
TspMI CCCGGG 1 cut(s) 692
TspRI CASTG 1 cut(s) 76
Van91I CCANNNNNTGG 1 cut(s) 396
VpaK11BI GGWCC 4 cut(s) 32, 173, 620, 768
XapI RAATTY 1 cut(s) 46
XmaI CCCGGG 1 cut(s) 692
XmnI GAANNNNTTC 1 cut(s) 659
XspI CTAG 4 cut(s) 113, 149, 528, 605
ZraI GACGTC 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.