Rmu_sc0010875.1_g000002

Xyloglucan galactosyltransferase KATAMARI1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010875.1
OG0015061
Physical Location & Seq
Reverse (-)
1220 .. 2986
1767 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010875.1_g000002.1.cds

Sequence Viewer

Length: 1767 bp
atgggaaggcctttagtgacaaccggaatatgccgccaatcatggttcgtcgttttagccggttctcttttatggtttttattgattggtgcatactattcccagtttatggtcagcaagggtgtcatgatcacctttttcaatcacaacatcttcgacaacaatgtcgctactgttgcttcaaattctgttgatcctttgctagataaaaaacccaatgttgaaaggaaagttgttttcaaggacgaaagtggggctgtgagaaccaaagatgttaatgattctgaagagcatggaaatttgacgaaagaaacagatcgagaagcacatgataattctagagggaataaagaaactcaacttgatgtgaaaggggttaccaaaatacccatcaaggaggaagatattcatgctgatattaaatcagatttcaaatctgaatctgaatctgatctgtgcctaggtaagtacatctatgtccatgaaatccctagcaagtttaatcaggatttgatccagcattgtggttcacttagcaattggactaatatgtgtgagttgtcatcaaacttgggtcttggccctcattttccaaataatgagagagtctactccaaaactggttggtttgctacaaaccagttcttgttagaggtcatattccacaataggttgaagcagtacaactgtttgacaaatgactcctctcaagcttcagcaatatttgtaccttactatgctggcctagacgtgtcgcggtacctttggggttccagctttagaatgagagattctggctcacttgaacttgtgaagtggctgagagaaaaaccagaatggaagagaatgtggggtagagatcattttatggtggcaggaagaatcacttgggattttcggagatttactgatgaggattcaaattgggggaacaagcttatgcttttgcctgagtcgaagaatatgaccattttgacaattgaatcaagcccttggaatagtaatgactttgcaataccatatccaacatacttccacccttcaatggacactgaagtgtttcactggcagaaccgaatgagaagacagcgaaggaggatcttgttctcatttgcaggcggcccgaggcctaatcttcaggactctatccgaaacgacatcatcgaccagtgtaaagctgcaagaagaaaatgcaagttgctagaatgctctacagggccagacaagtgtcacaagccggttttcgtgatgaaaatgtttcaaggttctgtgttctgcttgcagcctcctggtgattctttgaccagaagatcaatctttgattctattctagctgggtgcataccggttttctttcatcctggttcggcctatgtccaatatgtttggcacttaccaaaggagcacaccaaatactctgtgcttatctcacagtttgacgtaaaaaacaagacggtcagcattgagagggtcttgagtggaatttcaagccaggaaatcgtgaaaatgagggaagaggttataagattgataccgacagttgtgtatgctgacccaagtaacaaattgaagactcatgatgatgcatttgatatttctgttaagggggttcttgaaagagttgacacaattggaaaggacatgagggaagggaagaatactagttttgattttgcagaaaaggtgagttggaagtacaatttgtttgggatagtgggagaacatgaatgggatcctttctttgaaggccaggatttaaaaggctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

588

Amino Acids

67.73

Weight (kDa)

7.92

Isoelectric Point (pI)

38.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015061)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29040
fragaria_vesca FvH4_3g36470
malus_domestica MD03G1090400.v1.1 MD11G1100100.v1.1
prunus_persica Prupe.6G074500_v2.0.a1
pyrus_communis pycom11g08430
rosa_chinensis RchiOBHm_Chr5g0065321
rosa_laevigata RLG00000035783
rosa_multiflora Rmu_sc0010875.1_g000002
rosa_roxburghii Rroxscaffold_1G00015860
rosa_rugosa Rorug05G0371200
rosa_samantha Rh5AG429100 Rh5BG444400 Rh5CG466700 Rh5DG456700
rosa_wichuraiana Rw5G040280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1523
AasI GACNNNNNNGTC 1 cut(s) 164
Acc65I GGTACC 1 cut(s) 759
AccB1I GGYRCC 1 cut(s) 759
AccB7I CCANNNNNTGG 1 cut(s) 109
AccI GTMKAC 1 cut(s) 609
AccII CGCG 1 cut(s) 757
AciI CCGC 3 cut(s) 34, 757, 1119
AclWI GGATC 5 cut(s) 188, 508, 1106, 1727, 1740
AcsI RAATTY 3 cut(s) 184, 298, 1482
AcuI CTGAAG 4 cut(s) 306, 699, 1074, 1121
AfaI GTAC 5 cut(s) 470, 683, 729, 761, 1697
AfiI CCNNNNNNNGG 2 cut(s) 109, 1045
AflIII ACRYGT 1 cut(s) 750
AgeI ACCGGT 1 cut(s) 1345
AhlI ACTAGT 1 cut(s) 1661
AjiI CACGTC 1 cut(s) 751
AjnI CCWGG 4 cut(s) 1288, 1360, 1491, 1749
AjuI GAANNNNNNNTTGG 2 cut(s) 871, 903
AleI CACNNNNGTG 1 cut(s) 1055
AluBI AGCT 5 cut(s) 713, 777, 937, 1178, 1334
AluI AGCT 5 cut(s) 713, 777, 937, 1178, 1334
Alw21I GWGCWC 1 cut(s) 1407
AlwI GGATC 5 cut(s) 188, 508, 1106, 1727, 1740
Ama87I CYCGRG 1 cut(s) 1123
AoxI GGCC 8 cut(s) 8, 580, 742, 1120, 1127, 1217, 1368, 1747
ApeKI GCWGC 2 cut(s) 1178, 1282
ApoI RAATTY 3 cut(s) 184, 298, 1482
AsiGI ACCGGT 1 cut(s) 1345
Asp700I GAANNNNTTC 2 cut(s) 405, 1059
Asp718I GGTACC 1 cut(s) 759
AspA2I CCTAGG 1 cut(s) 460
AspS9I GGNCC 3 cut(s) 581, 1121, 1217
AsuHPI GGTGA 3 cut(s) 124, 1304, 1696
AvaI CYCGRG 1 cut(s) 1123
AvrII CCTAGG 1 cut(s) 460
BamHI GGATCC 1 cut(s) 1732
BanI GGYRCC 1 cut(s) 759
BbsI GAAGAC 2 cut(s) 1090, 1577
Bbv12I GWGCWC 1 cut(s) 1407
BbvI GCAGC 2 cut(s) 1165, 1294
BccI CCATC 1 cut(s) 398
BciT130I CCWGG 4 cut(s) 1290, 1362, 1493, 1751
BclI TGATCA 1 cut(s) 129
BcuI ACTAGT 1 cut(s) 1661
BfaI CTAG 9 cut(s) 203, 339, 461, 492, 746, 1202, 1331, 1662, 1765
BfmI CTRYAG 1 cut(s) 1212
BisI GCNGC 4 cut(s) 34, 1120, 1179, 1283
BlnI CCTAGG 1 cut(s) 460
BlsI GCNGC 4 cut(s) 35, 1121, 1180, 1284
Bme1390I CCNGG 4 cut(s) 1290, 1362, 1493, 1751
BmeT110I CYCGRG 1 cut(s) 1123
BmgBI CACGTC 1 cut(s) 751
BmgT120I GGNCC 3 cut(s) 581, 1121, 1217
BmiI GGNNCC 3 cut(s) 761, 772, 1734
BmrFI CCNGG 4 cut(s) 1290, 1362, 1493, 1751
BmrI ACTGGG 1 cut(s) 97
BmsI GCATC 1 cut(s) 1573
BmuI ACTGGG 1 cut(s) 97
BoxI GACNNNNGTC 1 cut(s) 1227
BpiI GAAGAC 2 cut(s) 1090, 1577
BpuEI CTTGAG 2 cut(s) 693, 1495
BsaJI CCNNGG 3 cut(s) 460, 992, 1124
BsaWI WCCGGW 2 cut(s) 23, 1345
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 1045
Bse118I RCCGGY 3 cut(s) 59, 1237, 1345
Bse1I ACTGG 5 cut(s) 103, 625, 640, 1070, 1168
BseBI CCWGG 4 cut(s) 1290, 1362, 1493, 1751
BseDI CCNNGG 3 cut(s) 460, 992, 1124
BseGI GGATG 1 cut(s) 1357
BseLI CCNNNNNNNGG 2 cut(s) 109, 1045
BseMII CTCAG 2 cut(s) 812, 942
BseNI ACTGG 5 cut(s) 103, 625, 640, 1070, 1168
BseRI GAGGAG 1 cut(s) 694
BseXI GCAGC 2 cut(s) 1165, 1294
BseYI CCCAGC 1 cut(s) 1334
Bsh1236I CGCG 1 cut(s) 757
BshFI GGCC 8 cut(s) 10, 582, 744, 1122, 1129, 1219, 1370, 1749
BshNI GGYRCC 1 cut(s) 759
BshTI ACCGGT 1 cut(s) 1345
BsiHKAI GWGCWC 1 cut(s) 1407
BsiHKCI CYCGRG 1 cut(s) 1123
BsiSI CCGG 4 cut(s) 24, 60, 1238, 1346
BslI CCNNNNNNNGG 2 cut(s) 109, 1045
BsmI GAATGC 1 cut(s) 1211
BsnI GGCC 8 cut(s) 10, 582, 744, 1122, 1129, 1219, 1370, 1749
BsoBI CYCGRG 1 cut(s) 1123
Bsp1286I GDGCHC 1 cut(s) 1407
Bsp143I GATC 9 cut(s) 129, 193, 316, 451, 513, 859, 1098, 1310, 1732
BspACI CCGC 3 cut(s) 34, 757, 1119
BspANI GGCC 8 cut(s) 10, 582, 744, 1122, 1129, 1219, 1370, 1749
BspCNI CTCAG 2 cut(s) 813, 943
BspFNI CGCG 1 cut(s) 757
BspHI TCATGA 2 cut(s) 126, 1576
BspLI GGNNCC 3 cut(s) 761, 772, 1734
BspPI GGATC 5 cut(s) 188, 508, 1106, 1727, 1740
BspQI GCTCTTC 1 cut(s) 282
BspT107I GGYRCC 1 cut(s) 759
BsrFI RCCGGY 3 cut(s) 59, 1237, 1345
BsrI ACTGG 5 cut(s) 103, 625, 640, 1070, 1168
BssAI RCCGGY 3 cut(s) 59, 1237, 1345
BssECI CCNNGG 3 cut(s) 460, 992, 1124
BssMI GATC 9 cut(s) 129, 193, 316, 451, 513, 859, 1098, 1310, 1732
BssT1I CCWWGG 2 cut(s) 460, 992
Bst2UI CCWGG 4 cut(s) 1290, 1362, 1493, 1751
Bst4CI ACNGT 5 cut(s) 175, 689, 1434, 1456, 1540
Bst6I CTCTTC 3 cut(s) 282, 836, 1509
BstC8I GCNNGC 3 cut(s) 742, 1117, 1280
BstDEI CTNAG 3 cut(s) 533, 821, 951
BstEII GGTNACC 1 cut(s) 376
BstF5I GGATG 1 cut(s) 1357
BstFNI CGCG 1 cut(s) 757
BstKTI GATC 9 cut(s) 132, 196, 319, 454, 516, 862, 1101, 1313, 1735
BstMBI GATC 9 cut(s) 129, 193, 316, 451, 513, 859, 1098, 1310, 1732
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstNI CCWGG 4 cut(s) 1290, 1362, 1493, 1751
BstPAI GACNNNNGTC 1 cut(s) 1227
BstPI GGTNACC 1 cut(s) 376
BstSCI CCNGG 4 cut(s) 1288, 1360, 1491, 1749
BstSFI CTRYAG 1 cut(s) 1212
BstUI CGCG 1 cut(s) 757
BstV1I GCAGC 2 cut(s) 1165, 1294
BstV2I GAAGAC 2 cut(s) 1090, 1577
BstX2I RGATCY 2 cut(s) 1098, 1732
BstXI CCANNNNNNTGG 1 cut(s) 524
BstYI RGATCY 2 cut(s) 1098, 1732
BsuRI GGCC 8 cut(s) 10, 582, 744, 1122, 1129, 1219, 1370, 1749
BtrI CACGTC 1 cut(s) 751
BtsCI GGATG 1 cut(s) 1357
BtsIMutI CAGTG 3 cut(s) 1050, 1063, 1175
Cac8I GCNNGC 3 cut(s) 742, 1117, 1280
CciI TCATGA 2 cut(s) 126, 1576
Cfr10I RCCGGY 3 cut(s) 59, 1237, 1345
Cfr13I GGNCC 3 cut(s) 581, 1121, 1217
Csp6I GTAC 5 cut(s) 469, 682, 728, 760, 1696
CspAI ACCGGT 1 cut(s) 1345
CviAII CATG 9 cut(s) 42, 127, 293, 329, 410, 482, 1577, 1642, 1724
CviQI GTAC 5 cut(s) 469, 682, 728, 760, 1696
DdeI CTNAG 3 cut(s) 533, 821, 951
DpnI GATC 9 cut(s) 131, 195, 318, 453, 515, 861, 1100, 1312, 1734
DpnII GATC 9 cut(s) 129, 193, 316, 451, 513, 859, 1098, 1310, 1732
DraI TTTAAA 1 cut(s) 1758
DrdI GACNNNNNNGTC 1 cut(s) 164
DseDI GACNNNNNNGTC 1 cut(s) 164
Eam1104I CTCTTC 3 cut(s) 282, 836, 1509
EarI CTCTTC 3 cut(s) 282, 836, 1509
Eco130I CCWWGG 2 cut(s) 460, 992
Eco147I AGGCCT 2 cut(s) 10, 1129
Eco57I CTGAAG 4 cut(s) 306, 699, 1074, 1121
Eco88I CYCGRG 1 cut(s) 1123
Eco91I GGTNACC 1 cut(s) 376
EcoO65I GGTNACC 1 cut(s) 376
EcoRII CCWGG 4 cut(s) 1288, 1360, 1491, 1749
EcoT14I CCWWGG 2 cut(s) 460, 992
EcoT22I ATGCAT 1 cut(s) 1588
ErhI CCWWGG 2 cut(s) 460, 992
FaeI CATG 9 cut(s) 45, 130, 296, 332, 413, 485, 1580, 1645, 1727
FalI AAGNNNNNCTT 2 cut(s) 871, 903
FatI CATG 9 cut(s) 41, 126, 292, 328, 409, 481, 1576, 1641, 1723
FbaI TGATCA 1 cut(s) 129
FblI GTMKAC 1 cut(s) 609
Fnu4HI GCNGC 4 cut(s) 34, 1120, 1179, 1283
FokI GGATG 1 cut(s) 1344
Fsp4HI GCNGC 4 cut(s) 34, 1120, 1179, 1283
FspBI CTAG 9 cut(s) 203, 339, 461, 492, 746, 1202, 1331, 1662, 1765
GluI GCNGC 4 cut(s) 34, 1120, 1179, 1283
GsaI CCCAGC 1 cut(s) 1338
HaeIII GGCC 8 cut(s) 10, 582, 744, 1122, 1129, 1219, 1370, 1749
HapII CCGG 4 cut(s) 24, 60, 1238, 1346
Hin1II CATG 9 cut(s) 45, 130, 296, 332, 413, 485, 1580, 1645, 1727
HincII GTYRAC 1 cut(s) 1624
HindII GTYRAC 1 cut(s) 1624
HindIII AAGCTT 2 cut(s) 711, 935
HpaII CCGG 4 cut(s) 24, 60, 1238, 1346
HphI GGTGA 3 cut(s) 124, 1304, 1696
Hpy166II GTNNAC 3 cut(s) 530, 610, 1624
Hpy188I TCNGA 7 cut(s) 286, 427, 439, 445, 451, 900, 1151
Hpy8I GTNNAC 3 cut(s) 530, 610, 1624
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 4 cut(s) 1050, 1086, 1643, 1739
HpyCH4III ACNGT 5 cut(s) 175, 689, 1434, 1456, 1540
HpyCH4IV ACGT 2 cut(s) 750, 1440
HpyCH4V TGCA 9 cut(s) 92, 1013, 1115, 1181, 1194, 1282, 1341, 1586, 1676
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 3 cut(s) 533, 821, 951
HpySE526I ACGT 2 cut(s) 750, 1440
Hsp92II CATG 9 cut(s) 45, 130, 296, 332, 413, 485, 1580, 1645, 1727
KpnI GGTACC 1 cut(s) 763
Ksp22I TGATCA 1 cut(s) 129
Kzo9I GATC 9 cut(s) 129, 193, 316, 451, 513, 859, 1098, 1310, 1732
LguI GCTCTTC 1 cut(s) 282
LmnI GCTCC 1 cut(s) 1402
Lsp1109I GCAGC 2 cut(s) 1165, 1294
LweI GCATC 1 cut(s) 1573
MaeI CTAG 9 cut(s) 203, 339, 461, 492, 746, 1202, 1331, 1662, 1765
MaeII ACGT 2 cut(s) 750, 1440
MaeIII GTNAC 4 cut(s) 16, 376, 1229, 1559
MalI GATC 9 cut(s) 131, 195, 318, 453, 515, 861, 1100, 1312, 1734
MboI GATC 9 cut(s) 129, 193, 316, 451, 513, 859, 1098, 1310, 1732
MfeI CAATTG 3 cut(s) 538, 978, 1629
MflI RGATCY 2 cut(s) 1098, 1732
MhlI GDGCHC 1 cut(s) 1407
MlyI GAGTC 5 cut(s) 615, 695, 962, 1136, 1567
MmeI TCCRAC 2 cut(s) 1049, 1670
Mph1103I ATGCAT 1 cut(s) 1588
MroXI GAANNNNTTC 2 cut(s) 405, 1059
MseI TTAA 5 cut(s) 276, 420, 501, 1602, 1757
MslI CAYNNNNRTG 2 cut(s) 1055, 1581
MspI CCGG 4 cut(s) 24, 60, 1238, 1346
MspR9I CCNGG 4 cut(s) 1290, 1362, 1493, 1751
MunI CAATTG 3 cut(s) 538, 978, 1629
Mva1269I GAATGC 1 cut(s) 1211
MvaI CCWGG 4 cut(s) 1290, 1362, 1493, 1751
MvnI CGCG 1 cut(s) 757
MwoI GCNNNNNNNGC 1 cut(s) 176
NdeII GATC 9 cut(s) 129, 193, 316, 451, 513, 859, 1098, 1310, 1732
NlaIII CATG 9 cut(s) 45, 130, 296, 332, 413, 485, 1580, 1645, 1727
NlaIV GGNNCC 3 cut(s) 761, 772, 1734
NmuCI GTSAC 2 cut(s) 16, 1229
NsiI ATGCAT 1 cut(s) 1588
OliI CACNNNNGTG 1 cut(s) 1055
PagI TCATGA 2 cut(s) 126, 1576
PceI AGGCCT 2 cut(s) 10, 1129
PciSI GCTCTTC 1 cut(s) 282
PcsI WCGNNNNNNNCGW 1 cut(s) 1161
PctI GAATGC 1 cut(s) 1211
PdmI GAANNNNTTC 2 cut(s) 405, 1059
PfeI GAWTC 9 cut(s) 281, 440, 446, 791, 882, 917, 983, 1295, 1322
PflMI CCANNNNNTGG 1 cut(s) 109
PinAI ACCGGT 1 cut(s) 1345
PkrI GCNGC 4 cut(s) 35, 1121, 1180, 1284
PleI GAGTC 5 cut(s) 614, 695, 961, 1136, 1567
PpsI GAGTC 5 cut(s) 614, 695, 961, 1136, 1567
PshAI GACNNNNGTC 1 cut(s) 1227
PsiI TTATAA 1 cut(s) 1523
Psp6I CCWGG 4 cut(s) 1288, 1360, 1491, 1749
PspEI GGTNACC 1 cut(s) 376
PspFI CCCAGC 1 cut(s) 1334
PspGI CCWGG 4 cut(s) 1288, 1360, 1491, 1749
PspN4I GGNNCC 3 cut(s) 761, 772, 1734
PspPI GGNCC 3 cut(s) 581, 1121, 1217
PsuI RGATCY 2 cut(s) 1098, 1732
RsaI GTAC 5 cut(s) 470, 683, 729, 761, 1697
RsaNI GTAC 5 cut(s) 469, 682, 728, 760, 1696
RseI CAYNNNNRTG 2 cut(s) 1055, 1581
SapI GCTCTTC 1 cut(s) 282
SaqAI TTAA 5 cut(s) 276, 420, 501, 1602, 1757
SatI GCNGC 4 cut(s) 34, 1120, 1179, 1283
Sau3AI GATC 9 cut(s) 129, 193, 316, 451, 513, 859, 1098, 1310, 1732
Sau96I GGNCC 3 cut(s) 581, 1121, 1217
SchI GAGTC 5 cut(s) 615, 695, 962, 1136, 1567
ScrFI CCNGG 4 cut(s) 1290, 1362, 1493, 1751
SduI GDGCHC 1 cut(s) 1407
SfaNI GCATC 1 cut(s) 1573
SfcI CTRYAG 1 cut(s) 1212
SmiMI CAYNNNNRTG 2 cut(s) 1055, 1581
SmlI CTYRAG 2 cut(s) 708, 1474
SmoI CTYRAG 2 cut(s) 708, 1474
SpeI ACTAGT 1 cut(s) 1661
SseBI AGGCCT 2 cut(s) 10, 1129
SsiI CCGC 3 cut(s) 34, 757, 1119
SspI AATATT 1 cut(s) 723
SspMI CTAG 9 cut(s) 203, 339, 461, 492, 746, 1202, 1331, 1662, 1765
StuI AGGCCT 2 cut(s) 10, 1129
StyD4I CCNGG 4 cut(s) 1288, 1360, 1491, 1749
StyI CCWWGG 2 cut(s) 460, 992
TaaI ACNGT 5 cut(s) 175, 689, 1434, 1456, 1540
TaiI ACGT 2 cut(s) 753, 1443
TaqI TCGA 4 cut(s) 156, 319, 956, 1164
TatI WGTACW 3 cut(s) 468, 681, 1695
TauI GCSGC 2 cut(s) 36, 1122
TfiI GAWTC 9 cut(s) 281, 440, 446, 791, 882, 917, 983, 1295, 1322
Tru1I TTAA 5 cut(s) 276, 420, 501, 1602, 1757
Tru9I TTAA 5 cut(s) 276, 420, 501, 1602, 1757
TscAI CASTG 3 cut(s) 1057, 1070, 1175
TseFI GTSAC 2 cut(s) 16, 1229
TseI GCWGC 2 cut(s) 1178, 1282
Tsp45I GTSAC 2 cut(s) 16, 1229
TspDTI ATGAA 5 cut(s) 398, 498, 1265, 1346, 1740
TspRI CASTG 3 cut(s) 1057, 1070, 1175
Van91I CCANNNNNTGG 1 cut(s) 109
XapI RAATTY 3 cut(s) 184, 298, 1482
XbaI TCTAGA 1 cut(s) 338
XmaJI CCTAGG 1 cut(s) 460
XmiI GTMKAC 1 cut(s) 609
XmnI GAANNNNTTC 2 cut(s) 405, 1059
XspI CTAG 9 cut(s) 203, 339, 461, 492, 746, 1202, 1331, 1662, 1765
Zsp2I ATGCAT 1 cut(s) 1588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.