Prupe.6G074500_v2.0.a1

Xyloglucan galactosyltransferase KATAMARI1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0015061
Physical Location & Seq
Reverse (-)
5088820 .. 5090496
1677 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G074500.1

Sequence Viewer

Length: 1677 bp
ATGGTGGGGAAGAACCTGATTGACCTGTTAGGCAATCACAACCCCGGCATTGCTGTCAATGTCACCAAAGATTCTGGTTCTGTTGATTCTGTTTCTTTGCCTAAAGAAATTACGGAAAGTAGTAGCACCAAATTGAGAGATGAAGGGCATCATATTAATGTTGTTTTCAATGATCAAAGTGGGGATTTTAATTTGAGAACCAAAGATGTTTTCGGGCAACATTCGGTTTCTAAGAAGGAATTAGAGCCTGATGACCATAATGATCAGGCACGTGATCTTATTGAGAATGAGGCTCAATCTGATAAGAATTTGGTTGAGGCTGTTGATCCAGGGAAATATATAGATCAAAGGATTAAATCTAACTCTGATTCATGCTTAGGTAAATACATTTATGTCCATGACATCCCTAGCAAATTTTACAAGGACTTGCTGCAGAAATGTGGTTCACTTAGCAATTGGACTAATATGTGTGATTTTGCATCAAACTCTGGTCTTGGCCCCCATCTTCCGAATTTCGAGAGAGTCTACTCAAATACTGGTTGGTTTTCTACAAACCAGTTCTTGTTAGAGGTCATATTCCACAACAGAATGAAGCAATACAACTGTTTGACAAAAGACTCATCCCAAGCTTCGGCAATCTTTGTACCTTATTATGCCGGCCTAGACGTGGCGCGGTACCTCTGGGGTTCCAACATGTCTATGAGAGATTCTGGTTCACTTGAAATTGTCAAGTGGCTGAGAGAAAAACCAGAGTGGAACAAAATGTGGGGTAGAGATCATTTTATGGTGGCAGGAAGAATTACTTGGGATTTTAGGAGATGGACCGACACTGATTCGGAGTGGGGTAACAAGCTCATGCTCTTACCTGAATCAAAGAACATGACCATGTTGACAATTGAATCAAGCCCTTGGAATAGTAATGACTTTGCCATACCATATCCAACATATTTTCACCCTTCAAAGGACAATGAGGTGTTTCAATGGCAGAACAGAATGAGGAGGCAGAGAAGGCGCATTCTGTTCTCATTTGCCGGTGGCCCCAGGCCTAATCTTCAAAGCTCAATCCGAAACGAAATCATTGACCAGTGTAGGGCTGCAAGGAGGAAATGCAAGTTGCTAGAATGCACTTCTGGTCCAGACAAGTGCCACAAGCCGGTGTTTGTGATGAAAATGTTTCAAGGTTCTGTGTTCTGCTTACAGCCTCCGGGTGATTCTTTAACTAGGAGATCAATTTTCGATTCGATTCTGGCTGGTTGTATTCCGGTGTTCTTTCATCCCGGTTCAGCCTACGTCCAATATCTGTGGCATTTACGAAGAGACTACACCAAATACTCCGTGTTTATATCGGCATTTGACATAAAGAATGGGAGGGTCAGCATTGAGAGCATCCTGCAAAGAATTCCAAGACAAAAAGTTGTGGAAATGAGAGAAGGCGTTATAAAACTGATACCAAAAGTGATATATGCAGACCCAAGTTCTAGATTGGAGACTCTTGAGGATGCATTTGATATTGTAGTTAAAGGGGTTCTTGAAAGAGTAGACACAATCAGGAGGGACATGAGAGAGGGGAAGAACACAAGTTTTGATTATGCAGAAAAAGTGAGCTGGAAATACAATCTGTTTGGGACAGTGGAGGAACATGAATGGGATCCTTTCTTTGAAAGGGGTAAAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

559

Amino Acids

64.56

Weight (kDa)

8.36

Isoelectric Point (pI)

48.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015061)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29040
fragaria_vesca FvH4_3g36470
malus_domestica MD03G1090400.v1.1 MD11G1100100.v1.1
prunus_persica Prupe.6G074500_v2.0.a1
pyrus_communis pycom11g08430
rosa_chinensis RchiOBHm_Chr5g0065321
rosa_laevigata RLG00000035783
rosa_multiflora Rmu_sc0010875.1_g000002
rosa_roxburghii Rroxscaffold_1G00015860
rosa_rugosa Rorug05G0371200
rosa_samantha Rh5AG429100 Rh5BG444400 Rh5CG466700 Rh5DG456700
rosa_wichuraiana Rw5G040280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1439
Acc65I GGTACC 1 cut(s) 675
AccB1I GGYRCC 1 cut(s) 675
AccI GTMKAC 2 cut(s) 525, 1539
AccII CGCG 1 cut(s) 673
AciI CCGC 1 cut(s) 673
AclWI GGATC 3 cut(s) 320, 1643, 1656
AcsI RAATTY 4 cut(s) 307, 413, 511, 1398
AcvI CACGTG 1 cut(s) 272
AfaI GTAC 2 cut(s) 645, 677
AfiI CCNNNNNNNGG 5 cut(s) 631, 667, 961, 1090, 1153
AflIII ACRYGT 1 cut(s) 693
AgsI TTSAA 9 cut(s) 169, 722, 899, 960, 980, 1055, 1178, 1532, 1661
AjiI CACGTC 1 cut(s) 667
AjnI CCWGG 2 cut(s) 328, 1040
AjuI GAANNNNNNNTTGG 4 cut(s) 194, 226, 787, 819
AluBI AGCT 4 cut(s) 629, 853, 1059, 1605
AluI AGCT 4 cut(s) 629, 853, 1059, 1605
Alw26I GTCTC 2 cut(s) 1311, 1481
AlwI GGATC 3 cut(s) 320, 1643, 1656
AoxI GGCC 4 cut(s) 496, 658, 1036, 1043
ApeKI GCWGC 2 cut(s) 430, 1094
ApoI RAATTY 4 cut(s) 307, 413, 511, 1398
AseI ATTAAT 1 cut(s) 156
Asp718I GGTACC 1 cut(s) 675
AspLEI GCGC 2 cut(s) 673, 1014
AspS9I GGNCC 4 cut(s) 497, 822, 1037, 1133
AsuC2I CCSGG 3 cut(s) 45, 1206, 1278
AsuHPI GGTGA 3 cut(s) 55, 944, 1220
AvaII GGWCC 2 cut(s) 822, 1133
BamHI GGATCC 1 cut(s) 1648
BanI GGYRCC 1 cut(s) 675
BbrPI CACGTG 1 cut(s) 272
BbvI GCAGC 2 cut(s) 417, 1081
BccI CCATC 2 cut(s) 510, 813
BciT130I CCWGG 2 cut(s) 330, 1042
BclI TGATCA 2 cut(s) 172, 262
BcnI CCSGG 3 cut(s) 45, 1206, 1278
BcoDI GTCTC 2 cut(s) 1311, 1481
BfaI CTAG 5 cut(s) 408, 662, 1118, 1221, 1479
BfmI CTRYAG 1 cut(s) 431
BisI GCNGC 2 cut(s) 431, 1095
BlsI GCNGC 2 cut(s) 432, 1096
Bme1390I CCNGG 5 cut(s) 45, 330, 1042, 1206, 1278
Bme18I GGWCC 2 cut(s) 822, 1133
BmgBI CACGTC 1 cut(s) 667
BmgT120I GGNCC 4 cut(s) 497, 822, 1037, 1133
BmiI GGNNCC 5 cut(s) 499, 677, 688, 1039, 1650
BmrFI CCNGG 5 cut(s) 45, 330, 1042, 1206, 1278
BmsI GCATC 4 cut(s) 157, 488, 1395, 1489
Bpu10I CCTNAGC 1 cut(s) 376
BpuEI CTTGAG 1 cut(s) 1514
BpuMI CCSGG 3 cut(s) 45, 1206, 1278
BsaAI YACGTR 1 cut(s) 272
BsaJI CCNNGG 4 cut(s) 43, 329, 908, 1040
BsaWI WCCGGW 1 cut(s) 1261
Bsc4I CCNNNNNNNGG 5 cut(s) 631, 667, 961, 1090, 1153
Bse118I RCCGGY 3 cut(s) 656, 1031, 1153
Bse1I ACTGG 3 cut(s) 541, 556, 1084
Bse3DI GCAATG 1 cut(s) 48
BseBI CCWGG 2 cut(s) 330, 1042
BseDI CCNNGG 4 cut(s) 43, 329, 908, 1040
BseGI GGATG 5 cut(s) 402, 620, 1273, 1386, 1504
BseLI CCNNNNNNNGG 5 cut(s) 631, 667, 961, 1090, 1153
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 1 cut(s) 728
BseNI ACTGG 3 cut(s) 541, 556, 1084
BseRI GAGGAG 1 cut(s) 1012
BseXI GCAGC 2 cut(s) 417, 1081
Bsh1236I CGCG 1 cut(s) 673
BshFI GGCC 4 cut(s) 498, 660, 1038, 1045
BshNI GGYRCC 1 cut(s) 675
BsiSI CCGG 7 cut(s) 45, 657, 1032, 1154, 1205, 1262, 1278
BslFI GGGAC 2 cut(s) 1568, 1639
BslI CCNNNNNNNGG 5 cut(s) 631, 667, 961, 1090, 1153
BsmAI GTCTC 2 cut(s) 1311, 1481
BsmFI GGGAC 2 cut(s) 1568, 1639
BsmI GAATGC 2 cut(s) 1014, 1127
BsnI GGCC 4 cut(s) 498, 660, 1038, 1045
Bsp143I GATC 8 cut(s) 172, 262, 274, 325, 343, 775, 1226, 1648
BspACI CCGC 1 cut(s) 673
BspANI GGCC 4 cut(s) 498, 660, 1038, 1045
BspCNI CTCAG 1 cut(s) 729
BspFNI CGCG 1 cut(s) 673
BspLI GGNNCC 5 cut(s) 499, 677, 688, 1039, 1650
BspMAI CTGCAG 1 cut(s) 435
BspPI GGATC 3 cut(s) 320, 1643, 1656
BspT107I GGYRCC 1 cut(s) 675
BsrDI GCAATG 1 cut(s) 48
BsrFI RCCGGY 3 cut(s) 656, 1031, 1153
BsrI ACTGG 3 cut(s) 541, 556, 1084
BssAI RCCGGY 3 cut(s) 656, 1031, 1153
BssECI CCNNGG 4 cut(s) 43, 329, 908, 1040
BssMI GATC 8 cut(s) 172, 262, 274, 325, 343, 775, 1226, 1648
BssT1I CCWWGG 1 cut(s) 908
Bst2UI CCWGG 2 cut(s) 330, 1042
Bst4CI ACNGT 2 cut(s) 605, 1630
Bst6I CTCTTC 1 cut(s) 1309
BstBAI YACGTR 1 cut(s) 272
BstC8I GCNNGC 1 cut(s) 658
BstDEI CTNAG 4 cut(s) 231, 376, 449, 737
BstF5I GGATG 5 cut(s) 402, 620, 1273, 1386, 1504
BstFNI CGCG 1 cut(s) 673
BstHHI GCGC 2 cut(s) 673, 1014
BstKTI GATC 8 cut(s) 175, 265, 277, 328, 346, 778, 1229, 1651
BstMAI GTCTC 2 cut(s) 1311, 1481
BstMBI GATC 8 cut(s) 172, 262, 274, 325, 343, 775, 1226, 1648
BstMWI GCNNNNNNNGC 2 cut(s) 1009, 1383
BstNI CCWGG 2 cut(s) 330, 1042
BstNSI RCATGY 1 cut(s) 697
BstSCI CCNGG 5 cut(s) 43, 328, 1040, 1204, 1276
BstSFI CTRYAG 1 cut(s) 431
BstUI CGCG 1 cut(s) 673
BstV1I GCAGC 2 cut(s) 417, 1081
BstX2I RGATCY 1 cut(s) 1648
BstYI RGATCY 1 cut(s) 1648
BsuRI GGCC 4 cut(s) 498, 660, 1038, 1045
BtrI CACGTC 1 cut(s) 667
BtsCI GGATG 5 cut(s) 402, 620, 1273, 1386, 1504
BtsIMutI CAGTG 3 cut(s) 828, 1091, 1635
Cac8I GCNNGC 1 cut(s) 658
CfoI GCGC 2 cut(s) 673, 1014
Cfr10I RCCGGY 3 cut(s) 656, 1031, 1153
Cfr13I GGNCC 4 cut(s) 497, 822, 1037, 1133
Csp6I GTAC 2 cut(s) 644, 676
CspCI CAANNNNNGTGG 2 cut(s) 1283, 1318
CviAII CATG 8 cut(s) 372, 398, 694, 856, 880, 886, 1558, 1640
CviQI GTAC 2 cut(s) 644, 676
DdeI CTNAG 4 cut(s) 231, 376, 449, 737
DpnI GATC 8 cut(s) 174, 264, 276, 327, 345, 777, 1228, 1650
DpnII GATC 8 cut(s) 172, 262, 274, 325, 343, 775, 1226, 1648
Eam1104I CTCTTC 1 cut(s) 1309
EarI CTCTTC 1 cut(s) 1309
Eco130I CCWWGG 1 cut(s) 908
Eco147I AGGCCT 1 cut(s) 1045
Eco47I GGWCC 2 cut(s) 822, 1133
Eco72I CACGTG 1 cut(s) 272
EcoRI GAATTC 1 cut(s) 1398
EcoRII CCWGG 2 cut(s) 328, 1040
EcoT14I CCWWGG 1 cut(s) 908
EcoT22I ATGCAT 1 cut(s) 1504
ErhI CCWWGG 1 cut(s) 908
FaeI CATG 8 cut(s) 375, 401, 697, 859, 883, 889, 1561, 1643
FalI AAGNNNNNCTT 4 cut(s) 787, 819, 1512, 1544
FaqI GGGAC 2 cut(s) 1568, 1639
FatI CATG 8 cut(s) 371, 397, 693, 855, 879, 885, 1557, 1639
FbaI TGATCA 2 cut(s) 172, 262
FblI GTMKAC 2 cut(s) 525, 1539
Fnu4HI GCNGC 2 cut(s) 431, 1095
FokI GGATG 5 cut(s) 389, 607, 1260, 1373, 1511
Fsp4HI GCNGC 2 cut(s) 431, 1095
FspBI CTAG 5 cut(s) 408, 662, 1118, 1221, 1479
GlaI GCGC 2 cut(s) 672, 1013
GluI GCNGC 2 cut(s) 431, 1095
HaeIII GGCC 4 cut(s) 498, 660, 1038, 1045
HapII CCGG 7 cut(s) 45, 657, 1032, 1154, 1205, 1262, 1278
HhaI GCGC 2 cut(s) 673, 1014
Hin1II CATG 8 cut(s) 375, 401, 697, 859, 883, 889, 1561, 1643
Hin6I GCGC 2 cut(s) 671, 1012
HinP1I GCGC 2 cut(s) 671, 1012
HincII GTYRAC 1 cut(s) 891
HindII GTYRAC 1 cut(s) 891
HindIII AAGCTT 1 cut(s) 627
HpaII CCGG 7 cut(s) 45, 657, 1032, 1154, 1205, 1262, 1278
HphI GGTGA 3 cut(s) 55, 944, 1220
Hpy166II GTNNAC 5 cut(s) 446, 526, 716, 891, 1540
Hpy188I TCNGA 5 cut(s) 301, 367, 510, 838, 1067
Hpy188III TCNNGA 6 cut(s) 517, 1136, 1479, 1493, 1529, 1549
Hpy8I GTNNAC 5 cut(s) 446, 526, 716, 891, 1540
HpyAV CCTTC 5 cut(s) 137, 229, 966, 1002, 1424
HpyCH4III ACNGT 2 cut(s) 605, 1630
HpyCH4IV ACGT 3 cut(s) 271, 666, 1290
HpyCH4V TGCA 9 cut(s) 433, 479, 1097, 1110, 1125, 1393, 1466, 1502, 1592
HpyF10VI GCNNNNNNNGC 2 cut(s) 1009, 1383
HpyF3I CTNAG 4 cut(s) 231, 376, 449, 737
HpySE526I ACGT 3 cut(s) 271, 666, 1290
Hsp92II CATG 8 cut(s) 375, 401, 697, 859, 883, 889, 1561, 1643
HspAI GCGC 2 cut(s) 671, 1012
KpnI GGTACC 1 cut(s) 679
KroI GCCGGC 1 cut(s) 656
KroNI GCCGGC 1 cut(s) 658
Ksp22I TGATCA 2 cut(s) 172, 262
Kzo9I GATC 8 cut(s) 172, 262, 274, 325, 343, 775, 1226, 1648
Lsp1109I GCAGC 2 cut(s) 417, 1081
LweI GCATC 4 cut(s) 157, 488, 1395, 1489
MaeI CTAG 5 cut(s) 408, 662, 1118, 1221, 1479
MaeII ACGT 3 cut(s) 271, 666, 1290
MaeIII GTNAC 2 cut(s) 61, 845
MalI GATC 8 cut(s) 174, 264, 276, 327, 345, 777, 1228, 1650
MboI GATC 8 cut(s) 172, 262, 274, 325, 343, 775, 1226, 1648
MboII GAAGA 6 cut(s) 22, 497, 807, 1043, 1326, 1582
MfeI CAATTG 2 cut(s) 454, 894
MflI RGATCY 1 cut(s) 1648
MlyI GAGTC 3 cut(s) 531, 611, 1483
MmeI TCCRAC 2 cut(s) 714, 965
Mph1103I ATGCAT 1 cut(s) 1504
MroNI GCCGGC 1 cut(s) 656
MseI TTAA 5 cut(s) 156, 189, 354, 1217, 1518
MslI CAYNNNNRTG 3 cut(s) 156, 698, 884
MspI CCGG 7 cut(s) 45, 657, 1032, 1154, 1205, 1262, 1278
MspR9I CCNGG 5 cut(s) 45, 330, 1042, 1206, 1278
MunI CAATTG 2 cut(s) 454, 894
Mva1269I GAATGC 2 cut(s) 1014, 1127
MvaI CCWGG 2 cut(s) 330, 1042
MvnI CGCG 1 cut(s) 673
MwoI GCNNNNNNNGC 2 cut(s) 1009, 1383
NaeI GCCGGC 1 cut(s) 658
NciI CCSGG 3 cut(s) 45, 1206, 1278
NdeII GATC 8 cut(s) 172, 262, 274, 325, 343, 775, 1226, 1648
NgoMIV GCCGGC 1 cut(s) 656
NlaIII CATG 8 cut(s) 375, 401, 697, 859, 883, 889, 1561, 1643
NlaIV GGNNCC 5 cut(s) 499, 677, 688, 1039, 1650
NmuCI GTSAC 1 cut(s) 61
NsiI ATGCAT 1 cut(s) 1504
NspI RCATGY 1 cut(s) 697
PceI AGGCCT 1 cut(s) 1045
PciI ACATGT 1 cut(s) 693
PctI GAATGC 2 cut(s) 1014, 1127
PdiI GCCGGC 1 cut(s) 658
PkrI GCNGC 2 cut(s) 432, 1096
PleI GAGTC 3 cut(s) 530, 611, 1483
PmaCI CACGTG 1 cut(s) 272
PmlI CACGTG 1 cut(s) 272
PpsI GAGTC 3 cut(s) 530, 611, 1483
Ppu21I YACGTR 1 cut(s) 272
PscI ACATGT 1 cut(s) 693
PshBI ATTAAT 1 cut(s) 156
PsiI TTATAA 1 cut(s) 1439
Psp6I CCWGG 2 cut(s) 328, 1040
PspCI CACGTG 1 cut(s) 272
PspGI CCWGG 2 cut(s) 328, 1040
PspN4I GGNNCC 5 cut(s) 499, 677, 688, 1039, 1650
PspPI GGNCC 4 cut(s) 497, 822, 1037, 1133
PstI CTGCAG 1 cut(s) 435
PsuI RGATCY 1 cut(s) 1648
RsaI GTAC 2 cut(s) 645, 677
RsaNI GTAC 2 cut(s) 644, 676
RseI CAYNNNNRTG 3 cut(s) 156, 698, 884
SaqAI TTAA 5 cut(s) 156, 189, 354, 1217, 1518
SatI GCNGC 2 cut(s) 431, 1095
Sau3AI GATC 8 cut(s) 172, 262, 274, 325, 343, 775, 1226, 1648
Sau96I GGNCC 4 cut(s) 497, 822, 1037, 1133
SchI GAGTC 3 cut(s) 531, 611, 1483
ScrFI CCNGG 5 cut(s) 45, 330, 1042, 1206, 1278
SfaNI GCATC 4 cut(s) 157, 488, 1395, 1489
SfcI CTRYAG 1 cut(s) 431
SinI GGWCC 2 cut(s) 822, 1133
SmiMI CAYNNNNRTG 3 cut(s) 156, 698, 884
SmlI CTYRAG 1 cut(s) 1493
SmoI CTYRAG 1 cut(s) 1493
SseBI AGGCCT 1 cut(s) 1045
SsiI CCGC 1 cut(s) 673
SspMI CTAG 5 cut(s) 408, 662, 1118, 1221, 1479
StuI AGGCCT 1 cut(s) 1045
StyD4I CCNGG 5 cut(s) 43, 328, 1040, 1204, 1276
StyI CCWWGG 1 cut(s) 908
TaaI ACNGT 2 cut(s) 605, 1630
TaiI ACGT 3 cut(s) 274, 669, 1293
TaqI TCGA 3 cut(s) 516, 1236, 1241
TaqII GACCGA 1 cut(s) 839
Tru1I TTAA 5 cut(s) 156, 189, 354, 1217, 1518
Tru9I TTAA 5 cut(s) 156, 189, 354, 1217, 1518
TscAI CASTG 3 cut(s) 835, 1091, 1635
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 2 cut(s) 430, 1094
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 6 cut(s) 156, 360, 605, 1181, 1262, 1656
TspGWI ACGGA 2 cut(s) 128, 1324
TspRI CASTG 3 cut(s) 835, 1091, 1635
VpaK11BI GGWCC 2 cut(s) 822, 1133
VspI ATTAAT 1 cut(s) 156
XapI RAATTY 4 cut(s) 307, 413, 511, 1398
XbaI TCTAGA 1 cut(s) 1478
XceI RCATGY 1 cut(s) 697
XmiI GTMKAC 2 cut(s) 525, 1539
XspI CTAG 5 cut(s) 408, 662, 1118, 1221, 1479
Zsp2I ATGCAT 1 cut(s) 1504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.