Rorug05G0371200
NAC Family

Xyloglucan galactosyltransferase KATAMARI1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002566
Physical Location & Seq
Reverse (-)
49974906 .. 49977996
3091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0371200.1

Sequence Viewer

Length: 1128 bp
ATGGACAATCTCCAATCCAATTACATGGACGAAGACGAGGAAGAAGACGAACAATCCAAAACCACCGCCGCCGCCGTCGCAATCACCGAGCTCGTTGAGCCGGCGACGACAACGGAGCCCGCAAACGACGACGAGCCCAGTTCGGAGCCCATAATTAACCCACCGCCCACCGACCCGCTCAACGGCAACAAAACCGAGACCGAAGCCTCCGAAGACCTCTCCGAGTCCGTCAAATCCCTCGAAAACGACGTCGACGTCGACATCGAAGACGAAGACCCGCCTCCCAAGAAGCAAAAGCAGCTCTCTTCTCTCACCGCCATTGCCTCCGCCGCGGCGACCACCCCACCCGCTTCTTCGGACCCGGACCAGGCCCAATTGCCCCAACCCGCACCCGAAGCCAACGGCAACGGCAACGGCAACGGCGCTCTCCTCCTCCCGGCGCAACCCTCCAAGAAGTCCACCAAGAAGAAGAACAACAATGTGTGGGTCACCAAGTCGACGCGGAAAGGGAAGAAGAAGACCAAGCCCAGCACCAACAACAATGCCCCCGGAGAGGACAAGGTTCTCGTCACTCCGGTCACCAGATTCCCCGACAAGACGGACGACACGCCGGAGATGACTATCTGCCTCTCCAAGGTCTACAAGGCCGAGAAAGTTGAGGTCAGCGAGGACCGAATGAGTGCCGGGAGTACTAAAGGGTATAGAATGGTTAGGGCCACCAGGGGAGTTGTGGAAGGTGCTTGGTACTTTGAAATTAGGGTAGTCAGCTTGGGAGAGACCGGCCACACCCGCCTCGGCTGGTCCACTGACAAAGGTGACCTTCAGGCTCCGGTTGGATATGATGGGAATAGTTTCGGGTATCGGGACATTGATGGGAGTAAGGTGCATAAGGCTTTGAGGGAGAAGTATGGCGACGAAGGGTATAAGGAAGGTGATGTTATAGGGTTCTATATAAATTTGCCGGATGGGGGGTCTTATGCCCCCAAACCTCCGCATTTGGTTTGGTATAAGGGGCAGAGGTATGCTACAGCACCTGAAGCCAAGGAGGATGCTGTCAAAGTAGTGCCTGGTGAGTGCAGTGTTAATGTTTTCTTCCAGTGTTCAAGCCTTTCATTATCTCGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

375

Amino Acids

40.66

Weight (kDa)

4.8

Isoelectric Point (pI)

43.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPRY PF00622 248 - 323 2e-09 SPRY domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 254
AatII GACGTC 2 cut(s) 252, 258
AccBSI CCGCTC 1 cut(s) 178
AccI GTMKAC 4 cut(s) 252, 258, 497, 639
AccII CGCG 2 cut(s) 332, 502
AcoI YGGCCR 1 cut(s) 781
AcsI RAATTY 1 cut(s) 955
AcuI CTGAAG 2 cut(s) 806, 1056
AcyI GRCGYC 2 cut(s) 249, 255
AfaI GTAC 2 cut(s) 691, 746
AfiI CCNNNNNNNGG 6 cut(s) 182, 367, 436, 553, 634, 968
AgsI TTSAA 2 cut(s) 752, 1104
AjnI CCWGG 3 cut(s) 366, 719, 1066
AluBI AGCT 3 cut(s) 91, 301, 768
AluI AGCT 3 cut(s) 91, 301, 768
Alw21I GWGCWC 1 cut(s) 93
Alw26I GTCTC 2 cut(s) 191, 770
AlwNI CAGNNNCTG 1 cut(s) 1034
AoxI GGCC 4 cut(s) 369, 645, 714, 781
ApeKI GCWGC 1 cut(s) 298
ApoI RAATTY 1 cut(s) 955
ArsI GACNNNNNNTTYG 2 cut(s) 234, 266
Asp700I GAANNNNTTC 1 cut(s) 851
AspLEI GCGC 2 cut(s) 425, 442
AspS9I GGNCC 6 cut(s) 358, 364, 370, 670, 714, 801
AsuC2I CCSGG 4 cut(s) 362, 437, 549, 685
AsuHPI GGTGA 7 cut(s) 76, 304, 481, 571, 827, 944, 1082
AvaII GGWCC 4 cut(s) 358, 364, 670, 801
BanII GRGCYC 4 cut(s) 93, 120, 138, 150
BbsI GAAGAC 6 cut(s) 39, 51, 219, 273, 279, 524
Bbv12I GWGCWC 1 cut(s) 93
BbvI GCAGC 1 cut(s) 310
BccI CCATC 3 cut(s) 836, 866, 959
BceAI ACGGC 6 cut(s) 59, 199, 418, 424, 430, 436
BciT130I CCWGG 3 cut(s) 368, 721, 1068
BcnI CCSGG 4 cut(s) 362, 437, 549, 685
BcoDI GTCTC 2 cut(s) 191, 770
BfmI CTRYAG 1 cut(s) 1026
BfoI RGCGCY 1 cut(s) 426
BisI GCNGC 5 cut(s) 69, 72, 299, 330, 333
BlsI GCNGC 5 cut(s) 70, 73, 300, 331, 334
BmcAI AGTACT 1 cut(s) 691
Bme1390I CCNGG 7 cut(s) 362, 368, 437, 549, 685, 721, 1068
Bme18I GGWCC 4 cut(s) 358, 364, 670, 801
BmgT120I GGNCC 6 cut(s) 358, 364, 370, 670, 714, 801
BmiI GGNNCC 4 cut(s) 117, 147, 360, 828
BmrFI CCNGG 7 cut(s) 362, 368, 437, 549, 685, 721, 1068
BmrI ACTGGG 1 cut(s) 132
BmsI GCATC 1 cut(s) 1039
BmuI ACTGGG 1 cut(s) 132
BpiI GAAGAC 6 cut(s) 39, 51, 219, 273, 279, 524
BpuMI CCSGG 4 cut(s) 362, 437, 549, 685
BsaBI GATNNNNATC 1 cut(s) 620
BsaHI GRCGYC 2 cut(s) 249, 255
BsaI GGTCTC 2 cut(s) 191, 770
BsaJI CCNNGG 6 cut(s) 330, 547, 633, 720, 793, 1041
BsaWI WCCGGW 2 cut(s) 574, 829
Bsc4I CCNNNNNNNGG 6 cut(s) 182, 367, 436, 553, 634, 968
Bse118I RCCGGY 2 cut(s) 100, 779
Bse1I ACTGG 2 cut(s) 138, 1096
Bse3DI GCAATG 1 cut(s) 318
Bse8I GATNNNNATC 1 cut(s) 620
BseBI CCWGG 3 cut(s) 368, 721, 1068
BseDI CCNNGG 6 cut(s) 330, 547, 633, 720, 793, 1041
BseGI GGATG 2 cut(s) 970, 1054
BseJI GATNNNNATC 1 cut(s) 620
BseLI CCNNNNNNNGG 6 cut(s) 182, 367, 436, 553, 634, 968
BseMI GCAATG 1 cut(s) 318
BseNI ACTGG 2 cut(s) 138, 1096
BseRI GAGGAG 2 cut(s) 419, 422
BseXI GCAGC 1 cut(s) 310
BseYI CCCAGC 1 cut(s) 527
BsgI GTGCAG 1 cut(s) 1096
Bsh1236I CGCG 2 cut(s) 332, 502
BshFI GGCC 4 cut(s) 371, 647, 716, 783
BsiHKAI GWGCWC 1 cut(s) 93
BslFI GGGAC 1 cut(s) 878
BslI CCNNNNNNNGG 6 cut(s) 182, 367, 436, 553, 634, 968
BsmAI GTCTC 2 cut(s) 191, 770
BsmFI GGGAC 1 cut(s) 878
BsnI GGCC 4 cut(s) 371, 647, 716, 783
Bso31I GGTCTC 2 cut(s) 191, 770
Bsp1286I GDGCHC 4 cut(s) 93, 120, 138, 150
BspANI GGCC 4 cut(s) 371, 647, 716, 783
BspFNI CGCG 2 cut(s) 332, 502
BspLI GGNNCC 4 cut(s) 117, 147, 360, 828
BspTNI GGTCTC 2 cut(s) 191, 770
BsrBI CCGCTC 1 cut(s) 178
BsrDI GCAATG 1 cut(s) 318
BsrFI RCCGGY 2 cut(s) 100, 779
BsrI ACTGG 2 cut(s) 138, 1096
BssAI RCCGGY 2 cut(s) 100, 779
BssECI CCNNGG 6 cut(s) 330, 547, 633, 720, 793, 1041
BssNI GRCGYC 2 cut(s) 249, 255
BssT1I CCWWGG 2 cut(s) 633, 1041
Bst2UI CCWGG 3 cut(s) 368, 721, 1068
Bst6I CTCTTC 1 cut(s) 310
BstACI GRCGYC 2 cut(s) 249, 255
BstC8I GCNNGC 2 cut(s) 102, 120
BstDSI CCRYGG 1 cut(s) 330
BstEII GGTNACC 3 cut(s) 487, 577, 815
BstENI CCTNNNNNAGG 1 cut(s) 632
BstF5I GGATG 2 cut(s) 970, 1054
BstFNI CGCG 2 cut(s) 332, 502
BstH2I RGCGCY 1 cut(s) 426
BstHHI GCGC 2 cut(s) 425, 442
BstMAI GTCTC 2 cut(s) 191, 770
BstMWI GCNNNNNNNGC 7 cut(s) 77, 97, 298, 329, 395, 789, 1037
BstNI CCWGG 3 cut(s) 368, 721, 1068
BstPI GGTNACC 3 cut(s) 487, 577, 815
BstSCI CCNGG 7 cut(s) 360, 366, 435, 547, 683, 719, 1066
BstSFI CTRYAG 1 cut(s) 1026
BstUI CGCG 2 cut(s) 332, 502
BstV1I GCAGC 1 cut(s) 310
BstV2I GAAGAC 6 cut(s) 39, 51, 219, 273, 279, 524
BstXI CCANNNNNNTGG 1 cut(s) 25
BsuRI GGCC 4 cut(s) 371, 647, 716, 783
BtgI CCRYGG 1 cut(s) 330
BtsCI GGATG 2 cut(s) 970, 1054
BtsI GCAGTG 1 cut(s) 1084
BtsIMutI CAGTG 3 cut(s) 804, 1084, 1103
Cac8I GCNNGC 2 cut(s) 102, 120
CaiI CAGNNNCTG 1 cut(s) 1034
CfoI GCGC 2 cut(s) 425, 442
Cfr10I RCCGGY 2 cut(s) 100, 779
Cfr13I GGNCC 6 cut(s) 358, 364, 370, 670, 714, 801
Cfr42I CCGCGG 1 cut(s) 333
CseI GACGC 1 cut(s) 508
Csp6I GTAC 2 cut(s) 690, 745
CviAII CATG 1 cut(s) 25
CviQI GTAC 2 cut(s) 690, 745
DrdI GACNNNNNNGTC 1 cut(s) 254
DseDI GACNNNNNNGTC 1 cut(s) 254
EaeI YGGCCR 1 cut(s) 781
Eam1104I CTCTTC 1 cut(s) 310
EarI CTCTTC 1 cut(s) 310
EciI GGCGGA 1 cut(s) 316
Ecl136II GAGCTC 1 cut(s) 91
Eco130I CCWWGG 2 cut(s) 633, 1041
Eco24I GRGCYC 4 cut(s) 93, 120, 138, 150
Eco31I GGTCTC 2 cut(s) 191, 770
Eco47I GGWCC 4 cut(s) 358, 364, 670, 801
Eco53kI GAGCTC 1 cut(s) 91
Eco57I CTGAAG 2 cut(s) 806, 1056
Eco91I GGTNACC 3 cut(s) 487, 577, 815
EcoICRI GAGCTC 1 cut(s) 91
EcoNI CCTNNNNNAGG 1 cut(s) 632
EcoO65I GGTNACC 3 cut(s) 487, 577, 815
EcoRII CCWGG 3 cut(s) 366, 719, 1066
EcoT14I CCWWGG 2 cut(s) 633, 1041
EcoT38I GRGCYC 4 cut(s) 93, 120, 138, 150
ErhI CCWWGG 2 cut(s) 633, 1041
FaeI CATG 1 cut(s) 28
FalI AAGNNNNNCTT 2 cut(s) 804, 836
FaqI GGGAC 1 cut(s) 878
FatI CATG 1 cut(s) 24
FauI CCCGC 6 cut(s) 127, 183, 285, 355, 394, 797
FblI GTMKAC 4 cut(s) 252, 258, 497, 639
Fnu4HI GCNGC 5 cut(s) 69, 72, 299, 330, 333
FokI GGATG 2 cut(s) 977, 1061
FriOI GRGCYC 4 cut(s) 93, 120, 138, 150
Fsp4HI GCNGC 5 cut(s) 69, 72, 299, 330, 333
GlaI GCGC 2 cut(s) 424, 441
GluI GCNGC 5 cut(s) 69, 72, 299, 330, 333
GsaI CCCAGC 1 cut(s) 531
HaeII RGCGCY 1 cut(s) 426
HaeIII GGCC 4 cut(s) 371, 647, 716, 783
HgaI GACGC 1 cut(s) 508
HhaI GCGC 2 cut(s) 425, 442
Hin1I GRCGYC 2 cut(s) 249, 255
Hin1II CATG 1 cut(s) 28
Hin6I GCGC 2 cut(s) 423, 440
HinP1I GCGC 2 cut(s) 423, 440
HincII GTYRAC 3 cut(s) 253, 259, 498
HindII GTYRAC 3 cut(s) 253, 259, 498
HinfI GANTC 2 cut(s) 224, 585
HphI GGTGA 7 cut(s) 76, 304, 481, 571, 827, 944, 1082
Hpy166II GTNNAC 6 cut(s) 253, 259, 459, 498, 640, 804
Hpy188I TCNGA 4 cut(s) 145, 211, 223, 358
Hpy188III TCNNGA 1 cut(s) 863
Hpy8I GTNNAC 6 cut(s) 253, 259, 459, 498, 640, 804
HpyAV CCTTC 4 cut(s) 728, 830, 911, 923
HpyCH4IV ACGT 2 cut(s) 249, 255
HpyCH4V TGCA 2 cut(s) 886, 1077
HpyF10VI GCNNNNNNNGC 7 cut(s) 77, 97, 298, 329, 395, 789, 1037
HpySE526I ACGT 2 cut(s) 249, 255
Hsp92I GRCGYC 2 cut(s) 249, 255
Hsp92II CATG 1 cut(s) 28
HspAI GCGC 2 cut(s) 423, 440
KroI GCCGGC 1 cut(s) 100
KroNI GCCGGC 1 cut(s) 102
KspI CCGCGG 1 cut(s) 333
LmnI GCTCC 3 cut(s) 115, 145, 832
Lsp1109I GCAGC 1 cut(s) 310
LweI GCATC 1 cut(s) 1039
MaeII ACGT 2 cut(s) 249, 255
MaeIII GTNAC 4 cut(s) 487, 568, 577, 815
MbiI CCGCTC 1 cut(s) 178
MfeI CAATTG 1 cut(s) 374
MhlI GDGCHC 4 cut(s) 93, 120, 138, 150
MluCI AATT 5 cut(s) 19, 153, 374, 753, 955
MlyI GAGTC 1 cut(s) 233
MmeI TCCRAC 1 cut(s) 814
MroNI GCCGGC 1 cut(s) 100
MroXI GAANNNNTTC 1 cut(s) 851
MseI TTAA 2 cut(s) 156, 1083
MspA1I CMGCKG 1 cut(s) 332
MspR9I CCNGG 7 cut(s) 362, 368, 437, 549, 685, 721, 1068
MunI CAATTG 1 cut(s) 374
MvaI CCWGG 3 cut(s) 368, 721, 1068
MvnI CGCG 2 cut(s) 332, 502
MwoI GCNNNNNNNGC 7 cut(s) 77, 97, 298, 329, 395, 789, 1037
NaeI GCCGGC 1 cut(s) 102
NciI CCSGG 4 cut(s) 362, 437, 549, 685
NgoMIV GCCGGC 1 cut(s) 100
NlaIII CATG 1 cut(s) 28
NlaIV GGNNCC 4 cut(s) 117, 147, 360, 828
NmeAIII GCCGAG 2 cut(s) 673, 774
NmuCI GTSAC 4 cut(s) 487, 568, 577, 815
PcsI WCGNNNNNNNCGW 5 cut(s) 84, 246, 252, 255, 261
PdiI GCCGGC 1 cut(s) 102
PdmI GAANNNNTTC 1 cut(s) 851
PfeI GAWTC 1 cut(s) 585
PkrI GCNGC 5 cut(s) 70, 73, 300, 331, 334
PleI GAGTC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 232
Psp124BI GAGCTC 1 cut(s) 93
Psp6I CCWGG 3 cut(s) 366, 719, 1066
PspEI GGTNACC 3 cut(s) 487, 577, 815
PspFI CCCAGC 1 cut(s) 527
PspGI CCWGG 3 cut(s) 366, 719, 1066
PspN4I GGNNCC 4 cut(s) 117, 147, 360, 828
PspPI GGNCC 6 cut(s) 358, 364, 370, 670, 714, 801
PstNI CAGNNNCTG 1 cut(s) 1034
RsaI GTAC 2 cut(s) 691, 746
RsaNI GTAC 2 cut(s) 690, 745
SacI GAGCTC 1 cut(s) 93
SacII CCGCGG 1 cut(s) 333
SalI GTCGAC 3 cut(s) 251, 257, 496
SaqAI TTAA 2 cut(s) 156, 1083
SatI GCNGC 5 cut(s) 69, 72, 299, 330, 333
Sau96I GGNCC 6 cut(s) 358, 364, 370, 670, 714, 801
ScaI AGTACT 1 cut(s) 691
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 7 cut(s) 362, 368, 437, 549, 685, 721, 1068
SduI GDGCHC 4 cut(s) 93, 120, 138, 150
SfaNI GCATC 1 cut(s) 1039
SfcI CTRYAG 1 cut(s) 1026
Sfr303I CCGCGG 1 cut(s) 333
SgrBI CCGCGG 1 cut(s) 333
SgrDI CGTCGACG 1 cut(s) 251
SinI GGWCC 4 cut(s) 358, 364, 670, 801
Sse9I AATT 5 cut(s) 19, 153, 374, 753, 955
SstI GAGCTC 1 cut(s) 93
StyD4I CCNGG 7 cut(s) 360, 366, 435, 547, 683, 719, 1066
StyI CCWWGG 2 cut(s) 633, 1041
TaiI ACGT 2 cut(s) 252, 258
TaqI TCGA 5 cut(s) 240, 252, 258, 264, 497
TaqII GACCGA 2 cut(s) 215, 687
TasI AATT 5 cut(s) 19, 153, 374, 753, 955
TatI WGTACW 1 cut(s) 689
TauI GCSGC 4 cut(s) 71, 74, 332, 335
TfiI GAWTC 1 cut(s) 585
Tru1I TTAA 2 cut(s) 156, 1083
Tru9I TTAA 2 cut(s) 156, 1083
TscAI CASTG 3 cut(s) 811, 1084, 1103
TseFI GTSAC 4 cut(s) 487, 568, 577, 815
TseI GCWGC 1 cut(s) 298
Tsp45I GTSAC 4 cut(s) 487, 568, 577, 815
TspDTI ATGAA 1 cut(s) 1101
TspGWI ACGGA 3 cut(s) 128, 217, 614
TspRI CASTG 3 cut(s) 811, 1084, 1103
VpaK11BI GGWCC 4 cut(s) 358, 364, 670, 801
XagI CCTNNNNNAGG 1 cut(s) 632
XapI RAATTY 1 cut(s) 955
XcmI CCANNNNNNNNNTGG 1 cut(s) 727
XmiI GTMKAC 4 cut(s) 252, 258, 497, 639
XmnI GAANNNNTTC 1 cut(s) 851
ZraI GACGTC 2 cut(s) 250, 256
ZrmI AGTACT 1 cut(s) 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.