Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0002566

Physical Location & Seq

Genomic Coordinates Forward (+)

42030884 .. 42032127

Gene Structure 1244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1178800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGTATTTTCTGTTGGTGCTTCTGGTGCACTTTTTGGTTTACTAGGAAGCATGCTTTCAGAGCTCACATCAAATTGGACAATGTATCATTGCTTACTCTCCTTTTCATCATCATATCTTGGATTTTTGTTTTTGATCCGCCCCCAGTTTAAATGGCTTACCCAACAGAATGCTCCCCTTGGACGTGTTACTACTCCAGTTAAATCTAAACACAAGACGTGTCAATATGTATTGTGGGTCCTCTCTTTGATACTATTGATTGTTGGGTATACTCTTGGCTTGGTTACTCCTTTTCGAGGGTTCAATCTAAACAACCATTGTTCCTGGTGTCATTATTTGAGCTGTGTCCCTACATCAAAATGGAATTGCAAGTCACAAAATATTTATTGTCTGATAATATGCTTCGAGCCAGATAGGGAATCAGCTGAACTTAACGTGCGTAAGCAATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006928 GO:0008150 GO:0008283 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

151

Amino Acids

17.15

Weight (kDa)

9.11

Isoelectric Point (pI)

36.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29050 AT2G29050
fragaria_vesca	FvH4_3g36420 FvH4_3g36420 FvH4_3g36420 FvH4_3g36420
malus_domestica	MD00G1013900.v1.1 MD00G1178600.v1.1 MD00G1178800.v1.1 MD03G1090500.v1.1 MD11G1100200.v1.1 MD11G1101200.v1.1 MD11G1101800.v1.1 MD11G1102100.v1.1 MD11G1104300.v1.1 MD11G1105000.v1.1 MD11G1106000.v1.1 MD11G1106300.v1.1 MD11G1106700.v1.1 MD11G1106900.v1.1 MD11G1107000.v1.1 MD11G1107900.v1.1 MD11G1261200.v1.1 MD15G1402100.v1.1
prunus_persica	Prupe.6G074600_v2.0.a1
pyrus_communis	pycom03g07200 pycom11g08440
rosa_chinensis	RchiOBHm_Chr5g0065311
rosa_laevigata	RLG00000035780 RLG00000035781 RLG00000035782
rosa_multiflora	Rmu_sc0009942.1_g000006 Rmu_sc0013827.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015870
rosa_rugosa	Rorug05G0371200
rosa_samantha	Rh5AG429000 Rh5BG444300 Rh5CG466500 Rh5DG456600
rosa_wichuraiana	Rw5G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	269
AciI	CCGC	1 cut(s)	139
AclWI	GGATC	1 cut(s)	130
AfiI	CCNNNNNNNGG	1 cut(s)	296
AflIII	ACRYGT	2 cut(s)	184, 218
AgsI	TTSAA	1 cut(s)	304
AjiI	CACGTC	2 cut(s)	185, 219
AjnI	CCWGG	1 cut(s)	323
AluBI	AGCT	3 cut(s)	64, 342, 425
AluI	AGCT	3 cut(s)	64, 342, 425
Alw21I	GWGCWC	2 cut(s)	31, 66
Alw44I	GTGCAC	1 cut(s)	27
AlwI	GGATC	1 cut(s)	130
ApaLI	GTGCAC	1 cut(s)	27
AspS9I	GGNCC	1 cut(s)	238
AvaII	GGWCC	1 cut(s)	238
BaeGI	GKGCMC	1 cut(s)	31
BanII	GRGCYC	1 cut(s)	66
Bbv12I	GWGCWC	2 cut(s)	31, 66
BciT130I	CCWGG	1 cut(s)	325
BfaI	CTAG	1 cut(s)	44
Bme1390I	CCNGG	1 cut(s)	325
Bme18I	GGWCC	1 cut(s)	238
BmgBI	CACGTC	2 cut(s)	185, 219
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	1 cut(s)	239
BmrFI	CCNGG	1 cut(s)	325
BmrI	ACTGGG	1 cut(s)	139
BmuI	ACTGGG	1 cut(s)	139
BpmI	CTGGAG	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	1 cut(s)	296
Bse1I	ACTGG	2 cut(s)	145, 197
Bse3DI	GCAATG	2 cut(s)	88, 452
BseBI	CCWGG	1 cut(s)	325
BseDI	CCNNGG	1 cut(s)	178
BseLI	CCNNNNNNNGG	1 cut(s)	296
BseMI	GCAATG	2 cut(s)	88, 452
BseNI	ACTGG	2 cut(s)	145, 197
BseSI	GKGCMC	1 cut(s)	31
BsiHKAI	GWGCWC	2 cut(s)	31, 66
BslFI	GGGAC	1 cut(s)	332
BslI	CCNNNNNNNGG	1 cut(s)	296
BsmFI	GGGAC	1 cut(s)	332
BsmI	GAATGC	1 cut(s)	175
Bsp1286I	GDGCHC	2 cut(s)	31, 66
Bsp143I	GATC	1 cut(s)	135
BspACI	CCGC	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	239
BspPI	GGATC	1 cut(s)	130
BsrDI	GCAATG	2 cut(s)	88, 452
BsrI	ACTGG	2 cut(s)	145, 197
BssECI	CCNNGG	1 cut(s)	178
BssMI	GATC	1 cut(s)	135
BssNAI	GTATAC	1 cut(s)	270
BssT1I	CCWWGG	1 cut(s)	178
Bst1107I	GTATAC	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	325
BstC8I	GCNNGC	1 cut(s)	53
BstENI	CCTNNNNNAGG	1 cut(s)	294
BstKTI	GATC	1 cut(s)	138
BstMBI	GATC	1 cut(s)	135
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 61
BstNI	CCWGG	1 cut(s)	325
BstNSI	RCATGY	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	323
BstSLI	GKGCMC	1 cut(s)	31
BstZ17I	GTATAC	1 cut(s)	270
BtrI	CACGTC	2 cut(s)	185, 219
Cac8I	GCNNGC	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	238
CviAII	CATG	1 cut(s)	52
CviJI	RGCY	6 cut(s)	64, 157, 279, 342, 409, 425
CviKI_1	RGCY	6 cut(s)	64, 157, 279, 342, 409, 425
DpnI	GATC	1 cut(s)	137
DpnII	GATC	1 cut(s)	135
DraI	TTTAAA	1 cut(s)	151
EciI	GGCGGA	1 cut(s)	128
Ecl136II	GAGCTC	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	178
Eco24I	GRGCYC	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	238
Eco53kI	GAGCTC	1 cut(s)	64
EcoICRI	GAGCTC	1 cut(s)	64
EcoNI	CCTNNNNNAGG	1 cut(s)	294
EcoO109I	RGGNCCY	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	323
EcoT14I	CCWWGG	1 cut(s)	178
EcoT38I	GRGCYC	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	178
FaeI	CATG	1 cut(s)	55
FaiI	YATR	5 cut(s)	53, 115, 228, 270, 400
FaqI	GGGAC	1 cut(s)	332
FatI	CATG	1 cut(s)	51
FblI	GTMKAC	1 cut(s)	269
FriOI	GRGCYC	1 cut(s)	66
FspBI	CTAG	1 cut(s)	44
GsuI	CTGGAG	1 cut(s)	180
Hin1II	CATG	1 cut(s)	55
HinfI	GANTC	1 cut(s)	419
Hpy166II	GTNNAC	3 cut(s)	29, 41, 270
Hpy188I	TCNGA	2 cut(s)	61, 393
Hpy8I	GTNNAC	3 cut(s)	29, 41, 270
HpyCH4IV	ACGT	3 cut(s)	184, 218, 435
HpyCH4V	TGCA	2 cut(s)	29, 369
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 61
HpySE526I	ACGT	3 cut(s)	184, 218, 435
Hsp92II	CATG	1 cut(s)	55
Kzo9I	GATC	1 cut(s)	135
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	6 cut(s)	9, 158, 210, 310, 337, 423
MaeI	CTAG	1 cut(s)	44
MaeII	ACGT	3 cut(s)	184, 218, 435
MaeIII	GTNAC	3 cut(s)	187, 283, 372
MalI	GATC	1 cut(s)	137
MboI	GATC	1 cut(s)	135
MhlI	GDGCHC	2 cut(s)	31, 66
MluCI	AATT	2 cut(s)	73, 364
MnlI	CCTC	2 cut(s)	251, 290
MseI	TTAA	3 cut(s)	150, 201, 432
MslI	CAYNNNNRTG	1 cut(s)	358
MspA1I	CMGCKG	1 cut(s)	425
MspR9I	CCNGG	1 cut(s)	325
Mva1269I	GAATGC	1 cut(s)	175
MvaI	CCWGG	1 cut(s)	325
MwoI	GCNNNNNNNGC	2 cut(s)	26, 61
NdeII	GATC	1 cut(s)	135
NlaIII	CATG	1 cut(s)	55
NlaIV	GGNNCC	1 cut(s)	239
NmuCI	GTSAC	1 cut(s)	372
NspI	RCATGY	1 cut(s)	55
PaeI	GCATGC	1 cut(s)	55
PctI	GAATGC	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	419
PpuMI	RGGWCCY	1 cut(s)	238
Psp124BI	GAGCTC	1 cut(s)	66
Psp5II	RGGWCCY	1 cut(s)	238
Psp6I	CCWGG	1 cut(s)	323
PspGI	CCWGG	1 cut(s)	323
PspN4I	GGNNCC	1 cut(s)	239
PspPI	GGNCC	1 cut(s)	238
PspPPI	RGGWCCY	1 cut(s)	238
PvuII	CAGCTG	1 cut(s)	425
RseI	CAYNNNNRTG	1 cut(s)	358
SacI	GAGCTC	1 cut(s)	66
SaqAI	TTAA	3 cut(s)	150, 201, 432
Sau3AI	GATC	1 cut(s)	135
Sau96I	GGNCC	1 cut(s)	238
ScrFI	CCNGG	1 cut(s)	325
SduI	GDGCHC	2 cut(s)	31, 66
SetI	ASST	6 cut(s)	66, 187, 221, 344, 427, 438
SinI	GGWCC	1 cut(s)	238
SmiMI	CAYNNNNRTG	1 cut(s)	358
SphI	GCATGC	1 cut(s)	55
Sse9I	AATT	2 cut(s)	73, 364
SsiI	CCGC	1 cut(s)	139
SspI	AATATT	1 cut(s)	382
SspMI	CTAG	1 cut(s)	44
SstI	GAGCTC	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	323
StyI	CCWWGG	1 cut(s)	178
TaiI	ACGT	3 cut(s)	187, 221, 438
TaqI	TCGA	2 cut(s)	295, 405
TasI	AATT	2 cut(s)	73, 364
TfiI	GAWTC	1 cut(s)	419
Tru1I	TTAA	3 cut(s)	150, 201, 432
Tru9I	TTAA	3 cut(s)	150, 201, 432
TseFI	GTSAC	1 cut(s)	372
Tsp45I	GTSAC	1 cut(s)	372
TspDTI	ATGAA	1 cut(s)	96
VneI	GTGCAC	1 cut(s)	27
VpaK11BI	GGWCC	1 cut(s)	238
XagI	CCTNNNNNAGG	1 cut(s)	294
XceI	RCATGY	1 cut(s)	55
XmiI	GTMKAC	1 cut(s)	269
XspI	CTAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.