Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002566

Physical Location & Seq

Genomic Coordinates Reverse (-)

9440546 .. 9441438

Gene Structure 893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1106700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGAAGCTTGATGTAATTCTGTTTTTAATCAATGTTGGACTTGGGAAACCTAGTGAATATACAAGCAAATCTACGATTAGTTATGCATCTGGATTTTTCCATGTGCTTTCCAATATGCTAAGTCTTGTATTCATTGAAATTCGGCTTGAGCAAGAATTTGGATTTGGGAAGTGGATCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006928 GO:0008150 GO:0008283 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

61

Amino Acids

6.83

Weight (kDa)

6.53

Isoelectric Point (pI)

35.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29050 AT2G29050
fragaria_vesca	FvH4_3g36420 FvH4_3g36420 FvH4_3g36420 FvH4_3g36420
malus_domestica	MD00G1013900.v1.1 MD00G1178600.v1.1 MD00G1178800.v1.1 MD03G1090500.v1.1 MD11G1100200.v1.1 MD11G1101200.v1.1 MD11G1101800.v1.1 MD11G1102100.v1.1 MD11G1104300.v1.1 MD11G1105000.v1.1 MD11G1106000.v1.1 MD11G1106300.v1.1 MD11G1106700.v1.1 MD11G1106900.v1.1 MD11G1107000.v1.1 MD11G1107900.v1.1 MD11G1261200.v1.1 MD15G1402100.v1.1
prunus_persica	Prupe.6G074600_v2.0.a1
pyrus_communis	pycom03g07200 pycom11g08440
rosa_chinensis	RchiOBHm_Chr5g0065311
rosa_laevigata	RLG00000035780 RLG00000035781 RLG00000035782
rosa_multiflora	Rmu_sc0009942.1_g000006 Rmu_sc0013827.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015870
rosa_rugosa	Rorug05G0371200
rosa_samantha	Rh5AG429000 Rh5BG444300 Rh5CG466500 Rh5DG456600
rosa_wichuraiana	Rw5G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	169, 182
AcsI	RAATTY	2 cut(s)	138, 155
AgsI	TTSAA	1 cut(s)	137
AjuI	GAANNNNNNNTTGG	2 cut(s)	147, 179
AluBI	AGCT	1 cut(s)	7
AluI	AGCT	1 cut(s)	7
AlwI	GGATC	2 cut(s)	169, 182
ApoI	RAATTY	2 cut(s)	138, 155
BamHI	GGATCC	1 cut(s)	174
BfaI	CTAG	1 cut(s)	51
BmiI	GGNNCC	1 cut(s)	176
BmsI	GCATC	1 cut(s)	95
BpuEI	CTTGAG	1 cut(s)	167
Bsp143I	GATC	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	176
BspPI	GGATC	2 cut(s)	169, 182
BssMI	GATC	1 cut(s)	174
BstDEI	CTNAG	1 cut(s)	119
BstKTI	GATC	1 cut(s)	177
BstMBI	GATC	1 cut(s)	174
BstX2I	RGATCY	1 cut(s)	174
BstYI	RGATCY	1 cut(s)	174
CviAII	CATG	1 cut(s)	101
CviJI	RGCY	2 cut(s)	7, 145
CviKI_1	RGCY	2 cut(s)	7, 145
DdeI	CTNAG	1 cut(s)	119
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
EcoT22I	ATGCAT	1 cut(s)	88
FaeI	CATG	1 cut(s)	104
FaiI	YATR	4 cut(s)	60, 84, 102, 116
FatI	CATG	1 cut(s)	100
FspBI	CTAG	1 cut(s)	51
Hin1II	CATG	1 cut(s)	104
HindIII	AAGCTT	1 cut(s)	5
Hpy188III	TCNNGA	1 cut(s)	90
HpyCH4V	TGCA	1 cut(s)	86
HpyF3I	CTNAG	1 cut(s)	119
Hsp92II	CATG	1 cut(s)	104
Kzo9I	GATC	1 cut(s)	174
LpnPI	CCDG	1 cut(s)	75
LweI	GCATC	1 cut(s)	95
MaeI	CTAG	1 cut(s)	51
MalI	GATC	1 cut(s)	176
MboI	GATC	1 cut(s)	174
MflI	RGATCY	1 cut(s)	174
MluCI	AATT	3 cut(s)	15, 138, 155
MmeI	TCCRAC	1 cut(s)	16
Mph1103I	ATGCAT	1 cut(s)	88
MseI	TTAA	2 cut(s)	26, 181
NdeII	GATC	1 cut(s)	174
NlaIII	CATG	1 cut(s)	104
NlaIV	GGNNCC	1 cut(s)	176
NsiI	ATGCAT	1 cut(s)	88
PspN4I	GGNNCC	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	174
SaqAI	TTAA	2 cut(s)	26, 181
Sau3AI	GATC	1 cut(s)	174
SetI	ASST	2 cut(s)	9, 52
SfaNI	GCATC	1 cut(s)	95
SgeI	CNNG	9 cut(s)	20, 53, 63, 75, 102, 113, 137, 158, 164
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	3 cut(s)	15, 138, 155
SspMI	CTAG	1 cut(s)	51
TasI	AATT	3 cut(s)	15, 138, 155
Tru1I	TTAA	2 cut(s)	26, 181
Tru9I	TTAA	2 cut(s)	26, 181
TspDTI	ATGAA	2 cut(s)	17, 121
XapI	RAATTY	2 cut(s)	138, 155
XspI	CTAG	1 cut(s)	51
Zsp2I	ATGCAT	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.