Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002566

Physical Location & Seq

Genomic Coordinates Forward (+)

8880653 .. 8883670

Gene Structure 3018 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1104300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGCGGTCCTATTTCATGTTAGAAAAGATGGGTGCTCTAGACGCGGCGGTGTGCAAAGAGTGGTTCATCAACACCAGAGATGGAGGCTGATCTCATGTATGTGGTTACATGCTGGAGTTTTCCATATGCTTGCCAATATGCTGAGTCTTGTATTCATTGGAAATTTGCTTGAGCAAGAATTTGGATTTGTTCGAATTGGTTTCCTATATCTCATGTCTGGTTTTGGTGGGAGTTTGCTTTCAGCTCTTTTTATTCAATATGGTATTTCTGTTGGTGCTTCTAGTGCACTTTTTGGTTTATTAGGAAGCATGCTTTCAGAGCTCATATCAAATTGGACAATGTATGTAAATAAGGAAAATAAAGTTTCTGTATACTCAATGATGTACCTCTTTATAGTATGTGCACGACCCTTTGATCTTACAGTTTCAGATTTTGATCCGCAGTTAGCAGCATTGCTTACTCTCCTTTTCATCATCATAATAAACTTAGCAGTGGGAATTCTACCACACGTGGACAACTTTGCTCATATTGGAGAATTTGTCTCCGGATTTCTTCTTGGATTTTTGTTTTTGATCCGCCCCCAATTTAAATGGCTTACCCAACGGAATGCTCCCCCTGGACGTGTTACTACTCCAGTTAAATCTAAACACAAGACGTATCAATATGTATTGTTGATCCTCTCTTTGATACTATTGGTTGTTGGCTTCTACTTCGCTGTTTTGGATTGCATATGTTGGCAGTATACTCTTGGCTTGGTTACTCTTTTTCGAGGGTTTAATCTAAACGACTTTTCCTGGTGTCATTATTTGAGCTATGTCCCTACATCAAAATGGAATTGCAAGTCACAAAATATTTATTTTCTGATAATATGCCGTACTTTTCTGCGCATAGTAACTTCCGCCTTAATATTTGATAGACATAAGTGCTTGCTTATTAATATGATCATGGAAATTGCTTCTGCAACGTACTTTCCGGATAGGGAATCAGCTGAACTTAACGTGGTAAGCAACAGTAGAAATGGAACATATTCATTGTCGGATTCCAGCCCCTCCCGGACTCAGCAGCTATATGCTGAGCTTTGCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006928 GO:0008150 GO:0008283 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

363

Amino Acids

41.19

Weight (kDa)

9.07

Isoelectric Point (pI)

38.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	25 - 191	5.5e-33	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29050 AT2G29050
fragaria_vesca	FvH4_3g36420 FvH4_3g36420 FvH4_3g36420 FvH4_3g36420
malus_domestica	MD00G1013900.v1.1 MD00G1178600.v1.1 MD00G1178800.v1.1 MD03G1090500.v1.1 MD11G1100200.v1.1 MD11G1101200.v1.1 MD11G1101800.v1.1 MD11G1102100.v1.1 MD11G1104300.v1.1 MD11G1105000.v1.1 MD11G1106000.v1.1 MD11G1106300.v1.1 MD11G1106700.v1.1 MD11G1106900.v1.1 MD11G1107000.v1.1 MD11G1107900.v1.1 MD11G1261200.v1.1 MD15G1402100.v1.1
prunus_persica	Prupe.6G074600_v2.0.a1
pyrus_communis	pycom03g07200 pycom11g08440
rosa_chinensis	RchiOBHm_Chr5g0065311
rosa_laevigata	RLG00000035780 RLG00000035781 RLG00000035782
rosa_multiflora	Rmu_sc0009942.1_g000006 Rmu_sc0013827.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015870
rosa_rugosa	Rorug05G0371200
rosa_samantha	Rh5AG429000 Rh5BG444300 Rh5CG466500 Rh5DG456600
rosa_wichuraiana	Rw5G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	887
AccI	GTMKAC	2 cut(s)	372, 743
AccII	CGCG	1 cut(s)	45
AccIII	TCCGGA	2 cut(s)	545, 973
AciI	CCGC	6 cut(s)	5, 45, 48, 440, 577, 900
AclWI	GGATC	3 cut(s)	431, 568, 670
AcsI	RAATTY	4 cut(s)	163, 179, 498, 536
AcvI	CACGTG	1 cut(s)	511
AfaI	GTAC	3 cut(s)	386, 877, 968
AflIII	ACRYGT	2 cut(s)	508, 622
AgsI	TTSAA	1 cut(s)	257
AjiI	CACGTC	1 cut(s)	623
AjnI	CCWGG	2 cut(s)	616, 794
AluBI	AGCT	6 cut(s)	245, 322, 813, 989, 1066, 1078
AluI	AGCT	6 cut(s)	245, 322, 813, 989, 1066, 1078
Alw21I	GWGCWC	4 cut(s)	38, 289, 324, 406
Alw26I	GTCTC	1 cut(s)	547
Alw44I	GTGCAC	2 cut(s)	285, 402
AlwI	GGATC	3 cut(s)	431, 568, 670
Aor13HI	TCCGGA	2 cut(s)	545, 973
ApaLI	GTGCAC	2 cut(s)	285, 402
ApeKI	GCWGC	2 cut(s)	449, 1063
ApoI	RAATTY	4 cut(s)	163, 179, 498, 536
AseI	ATTAAT	1 cut(s)	936
Asp700I	GAANNNNTTC	1 cut(s)	1027
AspLEI	GCGC	1 cut(s)	888
AspS9I	GGNCC	1 cut(s)	7
AsuC2I	CCSGG	1 cut(s)	1054
AsuII	TTCGAA	1 cut(s)	193
AvaII	GGWCC	1 cut(s)	7
BaeGI	GKGCMC	2 cut(s)	289, 406
BanII	GRGCYC	1 cut(s)	324
BbrPI	CACGTG	1 cut(s)	511
Bbv12I	GWGCWC	4 cut(s)	38, 289, 324, 406
BbvI	GCAGC	2 cut(s)	461, 1075
BccI	CCATC	2 cut(s)	23, 75
BceAI	ACGGC	1 cut(s)	858
BciT130I	CCWGG	2 cut(s)	618, 796
BclI	TGATCA	1 cut(s)	942
BcnI	CCSGG	1 cut(s)	1054
BcoDI	GTCTC	1 cut(s)	547
BfaI	CTAG	2 cut(s)	39, 282
BisI	GCNGC	3 cut(s)	46, 450, 1064
BlpI	GCTNAGC	1 cut(s)	1074
BlsI	GCNGC	3 cut(s)	47, 451, 1065
Bme1390I	CCNGG	3 cut(s)	618, 796, 1054
Bme18I	GGWCC	1 cut(s)	7
BmgBI	CACGTC	1 cut(s)	623
BmgT120I	GGNCC	1 cut(s)	7
BmrFI	CCNGG	3 cut(s)	618, 796, 1054
BpmI	CTGGAG	2 cut(s)	135, 618
Bpu1102I	GCTNAGC	1 cut(s)	1074
Bpu14I	TTCGAA	1 cut(s)	193
BpuEI	CTTGAG	1 cut(s)	191
BpuMI	CCSGG	1 cut(s)	1054
BsaAI	YACGTR	1 cut(s)	511
BsaBI	GATNNNNATC	1 cut(s)	435
BsaJI	CCNNGG	1 cut(s)	616
BsaWI	WCCGGW	2 cut(s)	545, 973
BsaXI	ACNNNNNCTCC	2 cut(s)	525, 555
Bse1I	ACTGG	1 cut(s)	635
Bse3DI	GCAATG	1 cut(s)	452
Bse8I	GATNNNNATC	1 cut(s)	435
BseAI	TCCGGA	2 cut(s)	545, 973
BseBI	CCWGG	2 cut(s)	618, 796
BseDI	CCNNGG	1 cut(s)	616
BseJI	GATNNNNATC	1 cut(s)	435
BseMI	GCAATG	1 cut(s)	452
BseMII	CTCAG	3 cut(s)	134, 1065, 1073
BseNI	ACTGG	1 cut(s)	635
BseSI	GKGCMC	2 cut(s)	289, 406
BseXI	GCAGC	2 cut(s)	461, 1075
Bsh1236I	CGCG	1 cut(s)	45
BsiHKAI	GWGCWC	4 cut(s)	38, 289, 324, 406
BsiSI	CCGG	3 cut(s)	546, 974, 1054
BslFI	GGGAC	1 cut(s)	803
BsmAI	GTCTC	1 cut(s)	547
BsmFI	GGGAC	1 cut(s)	803
BsmI	GAATGC	1 cut(s)	613
Bsp119I	TTCGAA	1 cut(s)	193
Bsp1286I	GDGCHC	4 cut(s)	38, 289, 324, 406
Bsp13I	TCCGGA	2 cut(s)	545, 973
Bsp143I	GATC	6 cut(s)	90, 415, 436, 573, 675, 942
Bsp1720I	GCTNAGC	1 cut(s)	1074
BspACI	CCGC	6 cut(s)	5, 45, 48, 440, 577, 900
BspCNI	CTCAG	3 cut(s)	135, 1066, 1072
BspEI	TCCGGA	2 cut(s)	545, 973
BspFNI	CGCG	1 cut(s)	45
BspPI	GGATC	3 cut(s)	431, 568, 670
BspT104I	TTCGAA	1 cut(s)	193
BsrDI	GCAATG	1 cut(s)	452
BsrI	ACTGG	1 cut(s)	635
BssECI	CCNNGG	1 cut(s)	616
BssMI	GATC	6 cut(s)	90, 415, 436, 573, 675, 942
BssNAI	GTATAC	2 cut(s)	373, 744
Bst1107I	GTATAC	2 cut(s)	373, 744
Bst2UI	CCWGG	2 cut(s)	618, 796
Bst4CI	ACNGT	2 cut(s)	424, 1013
BstBAI	YACGTR	1 cut(s)	511
BstBI	TTCGAA	1 cut(s)	193
BstC8I	GCNNGC	3 cut(s)	132, 311, 929
BstDEI	CTNAG	4 cut(s)	143, 487, 1059, 1074
BstFNI	CGCG	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	888
BstKTI	GATC	6 cut(s)	93, 418, 439, 576, 678, 945
BstMAI	GTCTC	1 cut(s)	547
BstMBI	GATC	6 cut(s)	90, 415, 436, 573, 675, 942
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 284, 319
BstNI	CCWGG	2 cut(s)	618, 796
BstNSI	RCATGY	2 cut(s)	113, 313
BstSCI	CCNGG	3 cut(s)	616, 794, 1052
BstSLI	GKGCMC	2 cut(s)	289, 406
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	2 cut(s)	461, 1075
BstZ17I	GTATAC	2 cut(s)	373, 744
BtrI	CACGTC	1 cut(s)	623
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	1 cut(s)	498
Cac8I	GCNNGC	3 cut(s)	132, 311, 929
CfoI	GCGC	1 cut(s)	888
Cfr13I	GGNCC	1 cut(s)	7
CseI	GACGC	1 cut(s)	51
Csp6I	GTAC	3 cut(s)	385, 876, 967
CviAII	CATG	6 cut(s)	17, 96, 110, 214, 310, 946
CviQI	GTAC	3 cut(s)	385, 876, 967
DdeI	CTNAG	4 cut(s)	143, 487, 1059, 1074
DpnI	GATC	6 cut(s)	92, 417, 438, 575, 677, 944
DpnII	GATC	6 cut(s)	90, 415, 436, 573, 675, 942
DraI	TTTAAA	1 cut(s)	589
EciI	GGCGGA	2 cut(s)	566, 889
Ecl136II	GAGCTC	1 cut(s)	322
Eco24I	GRGCYC	1 cut(s)	324
Eco47I	GGWCC	1 cut(s)	7
Eco53kI	GAGCTC	1 cut(s)	322
Eco72I	CACGTG	1 cut(s)	511
EcoICRI	GAGCTC	1 cut(s)	322
EcoRI	GAATTC	1 cut(s)	498
EcoRII	CCWGG	2 cut(s)	616, 794
EcoT38I	GRGCYC	1 cut(s)	324
FaeI	CATG	6 cut(s)	20, 99, 113, 217, 313, 949
FaqI	GGGAC	1 cut(s)	803
FatI	CATG	6 cut(s)	16, 95, 109, 213, 309, 945
FauNDI	CATATG	2 cut(s)	126, 731
FbaI	TGATCA	1 cut(s)	942
FblI	GTMKAC	2 cut(s)	372, 743
Fnu4HI	GCNGC	3 cut(s)	46, 450, 1064
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	3 cut(s)	46, 450, 1064
FspBI	CTAG	2 cut(s)	39, 282
FspI	TGCGCA	1 cut(s)	887
GlaI	GCGC	1 cut(s)	887
GluI	GCNGC	3 cut(s)	46, 450, 1064
GsuI	CTGGAG	2 cut(s)	135, 618
HapII	CCGG	3 cut(s)	546, 974, 1054
HgaI	GACGC	1 cut(s)	51
HhaI	GCGC	1 cut(s)	888
Hin1II	CATG	6 cut(s)	20, 99, 113, 217, 313, 949
Hin6I	GCGC	1 cut(s)	886
HinP1I	GCGC	1 cut(s)	886
HinfI	GANTC	4 cut(s)	145, 983, 1040, 1057
HpaII	CCGG	3 cut(s)	546, 974, 1054
Hpy166II	GTNNAC	5 cut(s)	287, 373, 404, 514, 744
Hpy188I	TCNGA	4 cut(s)	319, 430, 864, 1039
Hpy188III	TCNNGA	3 cut(s)	39, 546, 974
Hpy8I	GTNNAC	5 cut(s)	287, 373, 404, 514, 744
HpyCH4III	ACNGT	2 cut(s)	424, 1013
HpyCH4IV	ACGT	5 cut(s)	510, 622, 656, 965, 999
HpyCH4V	TGCA	7 cut(s)	55, 287, 404, 729, 840, 962, 1083
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 284, 319
HpyF3I	CTNAG	4 cut(s)	143, 487, 1059, 1074
HpySE526I	ACGT	5 cut(s)	510, 622, 656, 965, 999
Hsp92II	CATG	6 cut(s)	20, 99, 113, 217, 313, 949
HspAI	GCGC	1 cut(s)	886
Kpn2I	TCCGGA	2 cut(s)	545, 973
Ksp22I	TGATCA	1 cut(s)	942
Kzo9I	GATC	6 cut(s)	90, 415, 436, 573, 675, 942
LmnI	GCTCC	1 cut(s)	616
Lsp1109I	GCAGC	2 cut(s)	461, 1075
MaeI	CTAG	2 cut(s)	39, 282
MaeII	ACGT	5 cut(s)	510, 622, 656, 965, 999
MaeIII	GTNAC	5 cut(s)	105, 625, 757, 843, 892
MalI	GATC	6 cut(s)	92, 417, 438, 575, 677, 944
MboI	GATC	6 cut(s)	90, 415, 436, 573, 675, 942
MboII	GAAGA	1 cut(s)	545
MhlI	GDGCHC	4 cut(s)	38, 289, 324, 406
MluCI	AATT	9 cut(s)	163, 179, 195, 331, 498, 536, 584, 835, 951
MlyI	GAGTC	2 cut(s)	154, 1051
MmeI	TCCRAC	1 cut(s)	1017
MnlI	CCTC	5 cut(s)	78, 398, 689, 764, 1060
MroI	TCCGGA	2 cut(s)	545, 973
MroXI	GAANNNNTTC	1 cut(s)	1027
MseI	TTAA	6 cut(s)	588, 639, 777, 905, 936, 996
MslI	CAYNNNNRTG	2 cut(s)	100, 829
MspA1I	CMGCKG	1 cut(s)	989
MspI	CCGG	3 cut(s)	546, 974, 1054
MspR9I	CCNGG	3 cut(s)	618, 796, 1054
Mva1269I	GAATGC	1 cut(s)	613
MvaI	CCWGG	2 cut(s)	618, 796
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	3 cut(s)	42, 284, 319
NciI	CCSGG	1 cut(s)	1054
NdeI	CATATG	2 cut(s)	126, 731
NdeII	GATC	6 cut(s)	90, 415, 436, 573, 675, 942
NlaIII	CATG	6 cut(s)	20, 99, 113, 217, 313, 949
NmuCI	GTSAC	1 cut(s)	843
NsbI	TGCGCA	1 cut(s)	887
NspI	RCATGY	2 cut(s)	113, 313
NspV	TTCGAA	1 cut(s)	193
PaeI	GCATGC	1 cut(s)	313
PctI	GAATGC	1 cut(s)	613
PdmI	GAANNNNTTC	1 cut(s)	1027
PfeI	GAWTC	2 cut(s)	983, 1040
PfoI	TCCNGGA	1 cut(s)	1052
PkrI	GCNGC	3 cut(s)	47, 451, 1065
PleI	GAGTC	2 cut(s)	153, 1051
PmaCI	CACGTG	1 cut(s)	511
PmlI	CACGTG	1 cut(s)	511
PpsI	GAGTC	2 cut(s)	153, 1051
Ppu21I	YACGTR	1 cut(s)	511
PshBI	ATTAAT	1 cut(s)	936
Psp124BI	GAGCTC	1 cut(s)	324
Psp6I	CCWGG	2 cut(s)	616, 794
PspCI	CACGTG	1 cut(s)	511
PspGI	CCWGG	2 cut(s)	616, 794
PspPI	GGNCC	1 cut(s)	7
PvuII	CAGCTG	1 cut(s)	989
RsaI	GTAC	3 cut(s)	386, 877, 968
RsaNI	GTAC	3 cut(s)	385, 876, 967
RseI	CAYNNNNRTG	2 cut(s)	100, 829
SacI	GAGCTC	1 cut(s)	324
SaqAI	TTAA	6 cut(s)	588, 639, 777, 905, 936, 996
SatI	GCNGC	3 cut(s)	46, 450, 1064
Sau3AI	GATC	6 cut(s)	90, 415, 436, 573, 675, 942
Sau96I	GGNCC	1 cut(s)	7
SchI	GAGTC	2 cut(s)	154, 1051
ScrFI	CCNGG	3 cut(s)	618, 796, 1054
SduI	GDGCHC	4 cut(s)	38, 289, 324, 406
SfuI	TTCGAA	1 cut(s)	193
SinI	GGWCC	1 cut(s)	7
SmiI	ATTTAAAT	1 cut(s)	589
SmiMI	CAYNNNNRTG	2 cut(s)	100, 829
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
SphI	GCATGC	1 cut(s)	313
Sse9I	AATT	9 cut(s)	163, 179, 195, 331, 498, 536, 584, 835, 951
SsiI	CCGC	6 cut(s)	5, 45, 48, 440, 577, 900
SspI	AATATT	2 cut(s)	853, 909
SspMI	CTAG	2 cut(s)	39, 282
SstI	GAGCTC	1 cut(s)	324
StyD4I	CCNGG	3 cut(s)	616, 794, 1052
SwaI	ATTTAAAT	1 cut(s)	589
TaaI	ACNGT	2 cut(s)	424, 1013
TaiI	ACGT	5 cut(s)	513, 625, 659, 968, 1002
TaqI	TCGA	2 cut(s)	193, 769
TasI	AATT	9 cut(s)	163, 179, 195, 331, 498, 536, 584, 835, 951
TauI	GCSGC	1 cut(s)	48
TfiI	GAWTC	2 cut(s)	983, 1040
Tru1I	TTAA	6 cut(s)	588, 639, 777, 905, 936, 996
Tru9I	TTAA	6 cut(s)	588, 639, 777, 905, 936, 996
TscAI	CASTG	1 cut(s)	498
TseFI	GTSAC	1 cut(s)	843
TseI	GCWGC	2 cut(s)	449, 1063
Tsp45I	GTSAC	1 cut(s)	843
TspDTI	ATGAA	5 cut(s)	5, 56, 145, 460, 1020
TspGWI	ACGGA	1 cut(s)	619
TspRI	CASTG	1 cut(s)	498
VneI	GTGCAC	2 cut(s)	285, 402
VpaK11BI	GGWCC	1 cut(s)	7
VspI	ATTAAT	1 cut(s)	936
XapI	RAATTY	4 cut(s)	163, 179, 498, 536
XbaI	TCTAGA	1 cut(s)	38
XceI	RCATGY	2 cut(s)	113, 313
XmiI	GTMKAC	2 cut(s)	372, 743
XmnI	GAANNNNTTC	1 cut(s)	1027
XspI	CTAG	2 cut(s)	39, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.