Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002566

Physical Location & Seq

Genomic Coordinates Forward (+)

6544311 .. 6547211

Gene Structure 2901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g08440.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGAGAGAGGCCAATCTGCTGCGCCGAGCAGCTTAGAGATAAAGGTGGTGAGTCCACGGCGGAGCGACAACGTTGTGCACCAGGGGGGACAGCCTCCGGAGACGACGACTCCGCGGCGGTCGTTCAGTGACTACAACCCGTTGAAGAGGTGGGTGTCATGGCTGGTGCCGTCGATTGTGGTTGCCAACATTGTGGTTTTTGTGGTGACCATGTTCGTGAACGATTGCCCCAAGAACTCCGACACTTGCATTGGTCGGTTCCTTGGCGGCCTCTCTTTTCAGCCCTTCAAGGAAAACCCACTTCTTGGGCCGTCTTCAACCACATTAGAAAAGATGGGTGCTCTAGACGCGCAGAGAGTGGTTCATCAACACCAGGGATGGCGACTGATCTCTTGTATGTGGTTACATGCTGGAGTTTTCCATGTGCTTGCCAATATGCTCAGTCTTGTATTCATTGGAATTCAGCTTGAGCAAGAGTTTGGATTTGTTCGAATTGGTTTCCTATATCTCATGTCTGGTTTTGGTGGGAGTTTGCTTTCAGCTCTTTTTATTCAATATGGTATTTCTGTTGGTGCTTCTGGTGCACTTTTTGGTTTACTAGGAAGCATGCTTTCAGAGCTCATATCAAATTGGACAATGTATGTAAATAAGTTAGCAGCATTGCTTACTCTCCTTTTCATCATCATAATAAACTTAGCAGTGGGGATTCTACCACATGTGGACAACTTTGCTCATATTGGAGGATTTGTCTCCGGATTTCTTCTTGGATTTTTGTTTTTGATCCGCCCCCAGTTTGAATGGCTTACCCAAGGGAATGCTTCCCCTGGACCTGTTACTACTCCAGTTAAATCTAAACACAAGACATATCAATATGTATTGTGGGTCCTCTCTTTGATACTATTGATTGTTGGGTATACTCTTGGCCTGGTTACTCTTTTTCGAGGGTCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006928 GO:0008150 GO:0008283 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

318

Amino Acids

34.86

Weight (kDa)

9.35

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29050 AT2G29050
fragaria_vesca	FvH4_3g36420 FvH4_3g36420 FvH4_3g36420 FvH4_3g36420
malus_domestica	MD00G1013900.v1.1 MD00G1178600.v1.1 MD00G1178800.v1.1 MD03G1090500.v1.1 MD11G1100200.v1.1 MD11G1101200.v1.1 MD11G1101800.v1.1 MD11G1102100.v1.1 MD11G1104300.v1.1 MD11G1105000.v1.1 MD11G1106000.v1.1 MD11G1106300.v1.1 MD11G1106700.v1.1 MD11G1106900.v1.1 MD11G1107000.v1.1 MD11G1107900.v1.1 MD11G1261200.v1.1 MD15G1402100.v1.1
prunus_persica	Prupe.6G074600_v2.0.a1
pyrus_communis	pycom03g07200 pycom11g08440
rosa_chinensis	RchiOBHm_Chr5g0065311
rosa_laevigata	RLG00000035780 RLG00000035781 RLG00000035782
rosa_multiflora	Rmu_sc0009942.1_g000006 Rmu_sc0013827.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015870
rosa_rugosa	Rorug05G0371200
rosa_samantha	Rh5AG429000 Rh5BG444300 Rh5CG466500 Rh5DG456600
rosa_wichuraiana	Rw5G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	166
AccB7I	CCANNNNNTGG	1 cut(s)	305
AccI	GTMKAC	1 cut(s)	914
AccII	CGCG	2 cut(s)	115, 350
AccIII	TCCGGA	2 cut(s)	97, 752
AciI	CCGC	6 cut(s)	61, 113, 115, 118, 267, 784
AclI	AACGTT	1 cut(s)	72
AclWI	GGATC	1 cut(s)	775
AcsI	RAATTY	1 cut(s)	459
AfiI	CCNNNNNNNGG	1 cut(s)	305
AflIII	ACRYGT	1 cut(s)	715
AgsI	TTSAA	5 cut(s)	145, 289, 318, 554, 797
AjnI	CCWGG	4 cut(s)	81, 372, 823, 924
AluBI	AGCT	4 cut(s)	33, 466, 542, 619
AluI	AGCT	4 cut(s)	33, 466, 542, 619
Alw21I	GWGCWC	4 cut(s)	81, 343, 586, 621
Alw26I	GTCTC	2 cut(s)	95, 754
Alw44I	GTGCAC	2 cut(s)	77, 582
AlwI	GGATC	1 cut(s)	775
Aor13HI	TCCGGA	2 cut(s)	97, 752
AoxI	GGCC	4 cut(s)	10, 268, 308, 922
ApaLI	GTGCAC	2 cut(s)	77, 582
ApeKI	GCWGC	3 cut(s)	20, 30, 656
ApoI	RAATTY	1 cut(s)	459
AspLEI	GCGC	2 cut(s)	25, 352
AspS9I	GGNCC	3 cut(s)	308, 827, 883
AsuHPI	GGTGA	2 cut(s)	61, 217
AsuII	TTCGAA	1 cut(s)	490
AvaII	GGWCC	2 cut(s)	827, 883
BaeGI	GKGCMC	2 cut(s)	81, 586
BanI	GGYRCC	1 cut(s)	166
BanII	GRGCYC	1 cut(s)	621
BbsI	GAAGAC	1 cut(s)	306
Bbv12I	GWGCWC	4 cut(s)	81, 343, 586, 621
BbvI	GCAGC	3 cut(s)	7, 42, 668
BccI	CCATC	2 cut(s)	328, 372
BceAI	ACGGC	3 cut(s)	74, 154, 295
BciT130I	CCWGG	4 cut(s)	83, 374, 825, 926
BcoDI	GTCTC	2 cut(s)	95, 754
BfaI	CTAG	2 cut(s)	344, 599
BisI	GCNGC	5 cut(s)	21, 31, 116, 268, 657
BlsI	GCNGC	5 cut(s)	22, 32, 117, 269, 658
Bme1390I	CCNGG	4 cut(s)	83, 374, 825, 926
Bme18I	GGWCC	2 cut(s)	827, 883
BmgT120I	GGNCC	3 cut(s)	308, 827, 883
BmiI	GGNNCC	3 cut(s)	168, 260, 884
BmrFI	CCNGG	4 cut(s)	83, 374, 825, 926
BmrI	ACTGGG	1 cut(s)	784
BmuI	ACTGGG	1 cut(s)	784
BpiI	GAAGAC	1 cut(s)	306
BpmI	CTGGAG	2 cut(s)	432, 825
Bpu14I	TTCGAA	1 cut(s)	490
BpuEI	CTTGAG	1 cut(s)	488
BsaJI	CCNNGG	7 cut(s)	56, 82, 113, 262, 373, 808, 823
BsaWI	WCCGGW	2 cut(s)	97, 752
BsaXI	ACNNNNNCTCC	4 cut(s)	94, 124, 732, 762
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
Bse1I	ACTGG	2 cut(s)	790, 842
Bse3DI	GCAATG	1 cut(s)	659
BseAI	TCCGGA	2 cut(s)	97, 752
BseBI	CCWGG	4 cut(s)	83, 374, 825, 926
BseDI	CCNNGG	7 cut(s)	56, 82, 113, 262, 373, 808, 823
BseGI	GGATG	1 cut(s)	383
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseMI	GCAATG	1 cut(s)	659
BseMII	CTCAG	1 cut(s)	454
BseNI	ACTGG	2 cut(s)	790, 842
BseSI	GKGCMC	2 cut(s)	81, 586
BseXI	GCAGC	3 cut(s)	7, 42, 668
Bsh1236I	CGCG	2 cut(s)	115, 350
Bsh1285I	CGRYCG	1 cut(s)	122
BshFI	GGCC	4 cut(s)	12, 270, 310, 924
BshNI	GGYRCC	1 cut(s)	166
BsiEI	CGRYCG	1 cut(s)	122
BsiHKAI	GWGCWC	4 cut(s)	81, 343, 586, 621
BsiSI	CCGG	2 cut(s)	98, 753
BslFI	GGGAC	1 cut(s)	102
BslI	CCNNNNNNNGG	1 cut(s)	305
BsmAI	GTCTC	2 cut(s)	95, 754
BsmBI	CGTCTC	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	102
BsmI	GAATGC	1 cut(s)	820
BsnI	GGCC	4 cut(s)	12, 270, 310, 924
Bsp119I	TTCGAA	1 cut(s)	490
Bsp1286I	GDGCHC	4 cut(s)	81, 343, 586, 621
Bsp13I	TCCGGA	2 cut(s)	97, 752
Bsp143I	GATC	2 cut(s)	387, 780
BspACI	CCGC	6 cut(s)	61, 113, 115, 118, 267, 784
BspANI	GGCC	4 cut(s)	12, 270, 310, 924
BspCNI	CTCAG	1 cut(s)	453
BspEI	TCCGGA	2 cut(s)	97, 752
BspFNI	CGCG	2 cut(s)	115, 350
BspLI	GGNNCC	3 cut(s)	168, 260, 884
BspPI	GGATC	1 cut(s)	775
BspT104I	TTCGAA	1 cut(s)	490
BspT107I	GGYRCC	1 cut(s)	166
BsrDI	GCAATG	1 cut(s)	659
BsrI	ACTGG	2 cut(s)	790, 842
BssECI	CCNNGG	7 cut(s)	56, 82, 113, 262, 373, 808, 823
BssMI	GATC	2 cut(s)	387, 780
BssNAI	GTATAC	1 cut(s)	915
BssT1I	CCWWGG	2 cut(s)	262, 808
Bst1107I	GTATAC	1 cut(s)	915
Bst2UI	CCWGG	4 cut(s)	83, 374, 825, 926
Bst6I	CTCTTC	1 cut(s)	140
BstBI	TTCGAA	1 cut(s)	490
BstC8I	GCNNGC	2 cut(s)	429, 608
BstDEI	CTNAG	3 cut(s)	34, 440, 694
BstDSI	CCRYGG	2 cut(s)	56, 113
BstEII	GGTNACC	1 cut(s)	205
BstF5I	GGATG	1 cut(s)	383
BstFNI	CGCG	2 cut(s)	115, 350
BstHHI	GCGC	2 cut(s)	25, 352
BstKTI	GATC	2 cut(s)	390, 783
BstMAI	GTCTC	2 cut(s)	95, 754
BstMBI	GATC	2 cut(s)	387, 780
BstMCI	CGRYCG	1 cut(s)	122
BstMWI	GCNNNNNNNGC	3 cut(s)	347, 581, 616
BstNI	CCWGG	4 cut(s)	83, 374, 825, 926
BstNSI	RCATGY	3 cut(s)	410, 610, 719
BstPI	GGTNACC	1 cut(s)	205
BstSCI	CCNGG	4 cut(s)	81, 372, 823, 924
BstSLI	GKGCMC	2 cut(s)	81, 586
BstUI	CGCG	2 cut(s)	115, 350
BstV1I	GCAGC	3 cut(s)	7, 42, 668
BstV2I	GAAGAC	1 cut(s)	306
BstXI	CCANNNNNNTGG	1 cut(s)	193
BstZ17I	GTATAC	1 cut(s)	915
BsuRI	GGCC	4 cut(s)	12, 270, 310, 924
BtgI	CCRYGG	2 cut(s)	56, 113
BtsCI	GGATG	1 cut(s)	383
BtsI	GCAGTG	1 cut(s)	705
BtsIMutI	CAGTG	2 cut(s)	133, 705
Cac8I	GCNNGC	2 cut(s)	429, 608
CfoI	GCGC	2 cut(s)	25, 352
Cfr13I	GGNCC	3 cut(s)	308, 827, 883
Cfr42I	CCGCGG	1 cut(s)	116
CseI	GACGC	1 cut(s)	356
CviAII	CATG	7 cut(s)	159, 211, 407, 422, 511, 607, 716
DdeI	CTNAG	3 cut(s)	34, 440, 694
DpnI	GATC	2 cut(s)	389, 782
DpnII	GATC	2 cut(s)	387, 780
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
EciI	GGCGGA	2 cut(s)	76, 773
Ecl136II	GAGCTC	1 cut(s)	619
Eco130I	CCWWGG	2 cut(s)	262, 808
Eco24I	GRGCYC	1 cut(s)	621
Eco47I	GGWCC	2 cut(s)	827, 883
Eco53kI	GAGCTC	1 cut(s)	619
Eco91I	GGTNACC	1 cut(s)	205
EcoICRI	GAGCTC	1 cut(s)	619
EcoO109I	RGGNCCY	1 cut(s)	883
EcoO65I	GGTNACC	1 cut(s)	205
EcoRI	GAATTC	1 cut(s)	459
EcoRII	CCWGG	4 cut(s)	81, 372, 823, 924
EcoT14I	CCWWGG	2 cut(s)	262, 808
EcoT38I	GRGCYC	1 cut(s)	621
ErhI	CCWWGG	2 cut(s)	262, 808
Esp3I	CGTCTC	1 cut(s)	95
FaeI	CATG	7 cut(s)	162, 214, 410, 425, 514, 610, 719
FaqI	GGGAC	1 cut(s)	102
FatI	CATG	7 cut(s)	158, 210, 406, 421, 510, 606, 715
FblI	GTMKAC	1 cut(s)	914
Fnu4HI	GCNGC	5 cut(s)	21, 31, 116, 268, 657
FokI	GGATG	1 cut(s)	390
FriOI	GRGCYC	1 cut(s)	621
Fsp4HI	GCNGC	5 cut(s)	21, 31, 116, 268, 657
FspBI	CTAG	2 cut(s)	344, 599
GlaI	GCGC	2 cut(s)	24, 351
GluI	GCNGC	5 cut(s)	21, 31, 116, 268, 657
GsuI	CTGGAG	2 cut(s)	432, 825
HaeIII	GGCC	4 cut(s)	12, 270, 310, 924
HapII	CCGG	2 cut(s)	98, 753
HgaI	GACGC	1 cut(s)	356
HhaI	GCGC	2 cut(s)	25, 352
Hin1II	CATG	7 cut(s)	162, 214, 410, 425, 514, 610, 719
Hin6I	GCGC	2 cut(s)	23, 350
HinP1I	GCGC	2 cut(s)	23, 350
HinfI	GANTC	3 cut(s)	52, 109, 706
HpaII	CCGG	2 cut(s)	98, 753
HphI	GGTGA	2 cut(s)	61, 217
Hpy166II	GTNNAC	7 cut(s)	56, 79, 220, 584, 596, 721, 915
Hpy188I	TCNGA	2 cut(s)	241, 616
Hpy188III	TCNNGA	4 cut(s)	98, 217, 344, 753
Hpy8I	GTNNAC	7 cut(s)	56, 79, 220, 584, 596, 721, 915
Hpy99I	CGWCG	2 cut(s)	109, 175
HpyAV	CCTTC	1 cut(s)	295
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	3 cut(s)	79, 249, 584
HpyF10VI	GCNNNNNNNGC	3 cut(s)	347, 581, 616
HpyF3I	CTNAG	3 cut(s)	34, 440, 694
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	7 cut(s)	162, 214, 410, 425, 514, 610, 719
HspAI	GCGC	2 cut(s)	23, 350
Kpn2I	TCCGGA	2 cut(s)	97, 752
KspI	CCGCGG	1 cut(s)	116
Kzo9I	GATC	2 cut(s)	387, 780
LmnI	GCTCC	1 cut(s)	63
Lsp1109I	GCAGC	3 cut(s)	7, 42, 668
MaeI	CTAG	2 cut(s)	344, 599
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	5 cut(s)	128, 205, 402, 832, 928
MalI	GATC	2 cut(s)	389, 782
MboI	GATC	2 cut(s)	387, 780
MboII	GAAGA	3 cut(s)	157, 306, 752
MhlI	GDGCHC	4 cut(s)	81, 343, 586, 621
MluCI	AATT	3 cut(s)	459, 492, 628
MlyI	GAGTC	2 cut(s)	61, 103
MmeI	TCCRAC	1 cut(s)	264
MnlI	CCTC	6 cut(s)	105, 141, 281, 734, 896, 935
MroI	TCCGGA	2 cut(s)	97, 752
MseI	TTAA	1 cut(s)	846
MslI	CAYNNNNRTG	1 cut(s)	215
MspA1I	CMGCKG	1 cut(s)	115
MspI	CCGG	2 cut(s)	98, 753
MspR9I	CCNGG	4 cut(s)	83, 374, 825, 926
Mva1269I	GAATGC	1 cut(s)	820
MvaI	CCWGG	4 cut(s)	83, 374, 825, 926
MvnI	CGCG	2 cut(s)	115, 350
MwoI	GCNNNNNNNGC	3 cut(s)	347, 581, 616
NdeII	GATC	2 cut(s)	387, 780
NlaIII	CATG	7 cut(s)	162, 214, 410, 425, 514, 610, 719
NlaIV	GGNNCC	3 cut(s)	168, 260, 884
NmeAIII	GCCGAG	1 cut(s)	51
NmuCI	GTSAC	2 cut(s)	128, 205
NspI	RCATGY	3 cut(s)	410, 610, 719
NspV	TTCGAA	1 cut(s)	490
PaeI	GCATGC	1 cut(s)	610
PciI	ACATGT	1 cut(s)	715
PctI	GAATGC	1 cut(s)	820
PfeI	GAWTC	1 cut(s)	706
PflMI	CCANNNNNTGG	1 cut(s)	305
PkrI	GCNGC	5 cut(s)	22, 32, 117, 269, 658
PleI	GAGTC	2 cut(s)	60, 103
PpsI	GAGTC	2 cut(s)	60, 103
PpuMI	RGGWCCY	1 cut(s)	883
PscI	ACATGT	1 cut(s)	715
Psp124BI	GAGCTC	1 cut(s)	621
Psp1406I	AACGTT	1 cut(s)	72
Psp5II	RGGWCCY	1 cut(s)	883
Psp6I	CCWGG	4 cut(s)	81, 372, 823, 924
PspEI	GGTNACC	1 cut(s)	205
PspGI	CCWGG	4 cut(s)	81, 372, 823, 924
PspN4I	GGNNCC	3 cut(s)	168, 260, 884
PspPI	GGNCC	3 cut(s)	308, 827, 883
PspPPI	RGGWCCY	1 cut(s)	883
RseI	CAYNNNNRTG	1 cut(s)	215
SacI	GAGCTC	1 cut(s)	621
SacII	CCGCGG	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	846
SatI	GCNGC	5 cut(s)	21, 31, 116, 268, 657
Sau3AI	GATC	2 cut(s)	387, 780
Sau96I	GGNCC	3 cut(s)	308, 827, 883
SchI	GAGTC	2 cut(s)	61, 103
ScrFI	CCNGG	4 cut(s)	83, 374, 825, 926
SduI	GDGCHC	4 cut(s)	81, 343, 586, 621
SetI	ASST	8 cut(s)	35, 48, 75, 152, 468, 544, 621, 832
Sfr303I	CCGCGG	1 cut(s)	116
SfuI	TTCGAA	1 cut(s)	490
SgrBI	CCGCGG	1 cut(s)	116
SinI	GGWCC	2 cut(s)	827, 883
SmiMI	CAYNNNNRTG	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	467
SmoI	CTYRAG	1 cut(s)	467
SphI	GCATGC	1 cut(s)	610
Sse9I	AATT	3 cut(s)	459, 492, 628
SsiI	CCGC	6 cut(s)	61, 113, 115, 118, 267, 784
SspMI	CTAG	2 cut(s)	344, 599
SstI	GAGCTC	1 cut(s)	621
StyD4I	CCNGG	4 cut(s)	81, 372, 823, 924
StyI	CCWWGG	2 cut(s)	262, 808
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	3 cut(s)	173, 490, 940
TasI	AATT	3 cut(s)	459, 492, 628
TauI	GCSGC	2 cut(s)	118, 270
TfiI	GAWTC	1 cut(s)	706
Tru1I	TTAA	1 cut(s)	846
Tru9I	TTAA	1 cut(s)	846
TscAI	CASTG	2 cut(s)	133, 705
TseFI	GTSAC	2 cut(s)	128, 205
TseI	GCWGC	3 cut(s)	20, 30, 656
Tsp45I	GTSAC	2 cut(s)	128, 205
TspDTI	ATGAA	3 cut(s)	353, 442, 667
TspRI	CASTG	2 cut(s)	133, 705
Van91I	CCANNNNNTGG	1 cut(s)	305
VneI	GTGCAC	2 cut(s)	77, 582
VpaK11BI	GGWCC	2 cut(s)	827, 883
XapI	RAATTY	1 cut(s)	459
XbaI	TCTAGA	1 cut(s)	343
XceI	RCATGY	3 cut(s)	410, 610, 719
XmiI	GTMKAC	1 cut(s)	914
XspI	CTAG	2 cut(s)	344, 599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.