Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009942.1

Orthogroup ID

OG0002566

Physical Location & Seq

Genomic Coordinates Forward (+)

37055 .. 40629

Gene Structure 3575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009942.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

atggcgagacggcaatcttcggcggagatagagataaaggtggtcactccgcagcggggtgacaacgtggtccacccggagggcccacctccggtaccgtcgccggcgctgtcgaggaccttcagcgactacaggcctttcaagaggtggaaatcgtggctggtgccgtggtttgttgtgatcaacattgtggtgtttgtgatcaccatgttcgtgaataactgccccaagaactctgatagatgcattgctcggtttctgggtcgcttttcgtttcagcccttcaaagaaaacccacttctggggccatcttcgtccacattagacaagatgggtgctctagaagtgcagaaaatgatccatggacgccaccaggcatggcggttgctctcctgtatgtggctacatgctggagttttccatgtactggccaatatgctgagtcttgtatttattggaattcggcttgagcaagaatttgggtttgtgggaattcttccacatgtggacaactttgctcatattggaggatttgtttctggatttctccttggatttgtgtttctgatccgcccccagtataaatgggttaatcaaatgaatgctcgccctggaagtattacaactccagttagatctaaacacaagacctatcagtatgtattgtgggttatctctctgatactactgattgctgggtatactcttgccctgatttatctcctaagaggagtcaatctgaatgactactgttcctggtgtcattatttgagctgtgtcccaacctccaaatggaagtgccagccacgccaaattgagtgtttgacaaaccagcttggaaatcaactgaacttgacttgctcaagcaacgggagaatgggcacatattcattggcagataacagcccttcccggattcagcagctatgtacggagctttgcagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006928 GO:0008150 GO:0008283 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

315

Amino Acids

35.84

Weight (kDa)

9.54

Isoelectric Point (pI)

53.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29050 AT2G29050
fragaria_vesca	FvH4_3g36420 FvH4_3g36420 FvH4_3g36420 FvH4_3g36420
malus_domestica	MD00G1013900.v1.1 MD00G1178600.v1.1 MD00G1178800.v1.1 MD03G1090500.v1.1 MD11G1100200.v1.1 MD11G1101200.v1.1 MD11G1101800.v1.1 MD11G1102100.v1.1 MD11G1104300.v1.1 MD11G1105000.v1.1 MD11G1106000.v1.1 MD11G1106300.v1.1 MD11G1106700.v1.1 MD11G1106900.v1.1 MD11G1107000.v1.1 MD11G1107900.v1.1 MD11G1261200.v1.1 MD15G1402100.v1.1
prunus_persica	Prupe.6G074600_v2.0.a1
pyrus_communis	pycom03g07200 pycom11g08440
rosa_chinensis	RchiOBHm_Chr5g0065311
rosa_laevigata	RLG00000035780 RLG00000035781 RLG00000035782
rosa_multiflora	Rmu_sc0009942.1_g000006 Rmu_sc0013827.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015870
rosa_rugosa	Rorug05G0371200
rosa_samantha	Rh5AG429000 Rh5BG444300 Rh5CG466500 Rh5DG456600
rosa_wichuraiana	Rw5G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	68
Acc65I	GGTACC	1 cut(s)	94
AccB1I	GGYRCC	2 cut(s)	94, 163
AccB7I	CCANNNNNTGG	1 cut(s)	427
AccI	GTMKAC	1 cut(s)	701
AciI	CCGC	5 cut(s)	23, 50, 55, 382, 571
AclWI	GGATC	2 cut(s)	352, 562
AcoI	YGGCCR	1 cut(s)	429
AcsI	RAATTY	3 cut(s)	459, 476, 492
AcuI	CTGAAG	1 cut(s)	106
AcyI	GRCGYC	1 cut(s)	367
AfaI	GTAC	3 cut(s)	96, 426, 931
AfiI	CCNNNNNNNGG	8 cut(s)	56, 79, 91, 301, 302, 399, 427, 792
AflIII	ACRYGT	1 cut(s)	502
AgsI	TTSAA	2 cut(s)	142, 286
AjnI	CCWGG	3 cut(s)	372, 610, 755
AluBI	AGCT	4 cut(s)	774, 835, 925, 937
AluI	AGCT	4 cut(s)	774, 835, 925, 937
Alw21I	GWGCWC	1 cut(s)	340
AlwI	GGATC	2 cut(s)	352, 562
AoxI	GGCC	4 cut(s)	82, 134, 305, 429
ApaI	GGGCCC	1 cut(s)	86
ApeKI	GCWGC	2 cut(s)	52, 922
ApoI	RAATTY	3 cut(s)	459, 476, 492
Asp718I	GGTACC	1 cut(s)	94
AspLEI	GCGC	1 cut(s)	109
AspS9I	GGNCC	5 cut(s)	70, 82, 83, 117, 305
AsuC2I	CCSGG	2 cut(s)	77, 913
AsuHPI	GGTGA	2 cut(s)	71, 196
AvaII	GGWCC	2 cut(s)	70, 117
BaeGI	GKGCMC	2 cut(s)	86, 884
BalI	TGGCCA	1 cut(s)	431
BanI	GGYRCC	2 cut(s)	94, 163
BanII	GRGCYC	1 cut(s)	86
Bbv12I	GWGCWC	1 cut(s)	340
BbvI	GCAGC	2 cut(s)	64, 934
BccI	CCATC	2 cut(s)	316, 325
BceAI	ACGGC	2 cut(s)	26, 151
BciT130I	CCWGG	3 cut(s)	374, 612, 757
BclI	TGATCA	2 cut(s)	180, 201
BcnI	CCSGG	2 cut(s)	77, 913
BfaI	CTAG	1 cut(s)	341
BfmI	CTRYAG	1 cut(s)	130
BfoI	RGCGCY	1 cut(s)	110
BglII	AGATCT	1 cut(s)	635
BisI	GCNGC	2 cut(s)	53, 923
BlsI	GCNGC	2 cut(s)	54, 924
Bme1390I	CCNGG	5 cut(s)	77, 374, 612, 757, 913
Bme18I	GGWCC	2 cut(s)	70, 117
BmgT120I	GGNCC	5 cut(s)	70, 82, 83, 117, 305
BmiI	GGNNCC	4 cut(s)	84, 96, 165, 306
BmrFI	CCNGG	5 cut(s)	77, 374, 612, 757, 913
BmrI	ACTGGG	1 cut(s)	571
BmsI	GCATC	1 cut(s)	233
BmuI	ACTGGG	1 cut(s)	571
BpmI	CTGGAG	2 cut(s)	432, 612
BpuEI	CTTGAG	2 cut(s)	488, 847
BpuMI	CCSGG	2 cut(s)	77, 913
BsaHI	GRCGYC	1 cut(s)	367
BsaJI	CCNNGG	4 cut(s)	167, 361, 550, 610
BsaWI	WCCGGW	1 cut(s)	91
BsaXI	ACNNNNNCTCC	2 cut(s)	519, 549
Bsc4I	CCNNNNNNNGG	8 cut(s)	56, 79, 91, 301, 302, 399, 427, 792
Bse118I	RCCGGY	1 cut(s)	103
Bse1I	ACTGG	3 cut(s)	432, 577, 629
Bse3DI	GCAATG	1 cut(s)	246
BseBI	CCWGG	3 cut(s)	374, 612, 757
BseDI	CCNNGG	4 cut(s)	167, 361, 550, 610
BseLI	CCNNNNNNNGG	8 cut(s)	56, 79, 91, 301, 302, 399, 427, 792
BseMI	GCAATG	1 cut(s)	246
BseMII	CTCAG	1 cut(s)	431
BseNI	ACTGG	3 cut(s)	432, 577, 629
BseRI	GAGGAG	1 cut(s)	744
BseSI	GKGCMC	2 cut(s)	86, 884
BseXI	GCAGC	2 cut(s)	64, 934
BseYI	CCCAGC	1 cut(s)	695
BsgI	GTGCAG	1 cut(s)	368
BshFI	GGCC	4 cut(s)	84, 136, 307, 431
BshNI	GGYRCC	2 cut(s)	94, 163
BsiHKAI	GWGCWC	1 cut(s)	340
BsiSI	CCGG	4 cut(s)	77, 92, 104, 913
BslFI	GGGAC	1 cut(s)	764
BslI	CCNNNNNNNGG	8 cut(s)	56, 79, 91, 301, 302, 399, 427, 792
BsmFI	GGGAC	1 cut(s)	764
BsmI	GAATGC	1 cut(s)	607
BsnI	GGCC	4 cut(s)	84, 136, 307, 431
Bsp120I	GGGCCC	1 cut(s)	82
Bsp1286I	GDGCHC	3 cut(s)	86, 340, 884
Bsp143I	GATC	5 cut(s)	180, 201, 357, 567, 635
Bsp19I	CCATGG	1 cut(s)	361
BspACI	CCGC	5 cut(s)	23, 50, 55, 382, 571
BspANI	GGCC	4 cut(s)	84, 136, 307, 431
BspCNI	CTCAG	1 cut(s)	432
BspLI	GGNNCC	4 cut(s)	84, 96, 165, 306
BspPI	GGATC	2 cut(s)	352, 562
BspT107I	GGYRCC	2 cut(s)	94, 163
BsrDI	GCAATG	1 cut(s)	246
BsrFI	RCCGGY	1 cut(s)	103
BsrI	ACTGG	3 cut(s)	432, 577, 629
BssAI	RCCGGY	1 cut(s)	103
BssECI	CCNNGG	4 cut(s)	167, 361, 550, 610
BssMI	GATC	5 cut(s)	180, 201, 357, 567, 635
BssNAI	GTATAC	1 cut(s)	702
BssNI	GRCGYC	1 cut(s)	367
BssT1I	CCWWGG	2 cut(s)	361, 550
Bst1107I	GTATAC	1 cut(s)	702
Bst2UI	CCWGG	3 cut(s)	374, 612, 757
Bst4CI	ACNGT	2 cut(s)	99, 752
BstACI	GRCGYC	1 cut(s)	367
BstC8I	GCNNGC	3 cut(s)	105, 607, 803
BstDEI	CTNAG	2 cut(s)	440, 725
BstDSI	CCRYGG	2 cut(s)	167, 361
BstH2I	RGCGCY	1 cut(s)	110
BstHHI	GCGC	1 cut(s)	109
BstKTI	GATC	5 cut(s)	183, 204, 360, 570, 638
BstMBI	GATC	5 cut(s)	180, 201, 357, 567, 635
BstMWI	GCNNNNNNNGC	1 cut(s)	807
BstNI	CCWGG	3 cut(s)	374, 612, 757
BstNSI	RCATGY	2 cut(s)	410, 506
BstSCI	CCNGG	5 cut(s)	75, 372, 610, 755, 911
BstSFI	CTRYAG	1 cut(s)	130
BstSLI	GKGCMC	2 cut(s)	86, 884
BstV1I	GCAGC	2 cut(s)	64, 934
BstX2I	RGATCY	1 cut(s)	635
BstYI	RGATCY	1 cut(s)	635
BstZ17I	GTATAC	1 cut(s)	702
BsuRI	GGCC	4 cut(s)	84, 136, 307, 431
BtgI	CCRYGG	2 cut(s)	167, 361
Cac8I	GCNNGC	3 cut(s)	105, 607, 803
CfoI	GCGC	1 cut(s)	109
Cfr10I	RCCGGY	1 cut(s)	103
Cfr13I	GGNCC	5 cut(s)	70, 82, 83, 117, 305
CseI	GACGC	1 cut(s)	375
Csp6I	GTAC	3 cut(s)	95, 425, 930
CviAII	CATG	6 cut(s)	208, 362, 378, 407, 422, 503
CviQI	GTAC	3 cut(s)	95, 425, 930
DdeI	CTNAG	2 cut(s)	440, 725
DpnI	GATC	5 cut(s)	182, 203, 359, 569, 637
DpnII	GATC	5 cut(s)	180, 201, 357, 567, 635
DrdI	GACNNNNNNGTC	1 cut(s)	68
DseDI	GACNNNNNNGTC	1 cut(s)	68
EaeI	YGGCCR	1 cut(s)	429
EciI	GGCGGA	2 cut(s)	38, 560
Eco130I	CCWWGG	2 cut(s)	361, 550
Eco147I	AGGCCT	1 cut(s)	136
Eco24I	GRGCYC	1 cut(s)	86
Eco47I	GGWCC	2 cut(s)	70, 117
Eco57I	CTGAAG	1 cut(s)	106
EcoO109I	RGGNCCY	2 cut(s)	82, 117
EcoRI	GAATTC	2 cut(s)	459, 492
EcoRII	CCWGG	3 cut(s)	372, 610, 755
EcoT14I	CCWWGG	2 cut(s)	361, 550
EcoT22I	ATGCAT	1 cut(s)	248
EcoT38I	GRGCYC	1 cut(s)	86
ErhI	CCWWGG	2 cut(s)	361, 550
FaeI	CATG	6 cut(s)	211, 365, 381, 410, 425, 506
FaqI	GGGAC	1 cut(s)	764
FatI	CATG	6 cut(s)	207, 361, 377, 406, 421, 502
FauI	CCCGC	1 cut(s)	48
FbaI	TGATCA	2 cut(s)	180, 201
FblI	GTMKAC	1 cut(s)	701
Fnu4HI	GCNGC	2 cut(s)	53, 923
FriOI	GRGCYC	1 cut(s)	86
Fsp4HI	GCNGC	2 cut(s)	53, 923
FspBI	CTAG	1 cut(s)	341
GlaI	GCGC	1 cut(s)	108
GluI	GCNGC	2 cut(s)	53, 923
GsaI	CCCAGC	1 cut(s)	699
GsuI	CTGGAG	2 cut(s)	432, 612
HaeII	RGCGCY	1 cut(s)	110
HaeIII	GGCC	4 cut(s)	84, 136, 307, 431
HapII	CCGG	4 cut(s)	77, 92, 104, 913
HgaI	GACGC	1 cut(s)	375
HhaI	GCGC	1 cut(s)	109
Hin1I	GRCGYC	1 cut(s)	367
Hin1II	CATG	6 cut(s)	211, 365, 381, 410, 425, 506
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HinfI	GANTC	3 cut(s)	442, 732, 916
HpaII	CCGG	4 cut(s)	77, 92, 104, 913
HphI	GGTGA	2 cut(s)	71, 196
Hpy166II	GTNNAC	4 cut(s)	73, 318, 508, 702
Hpy188I	TCNGA	4 cut(s)	238, 567, 681, 741
Hpy188III	TCNNGA	4 cut(s)	142, 214, 341, 540
Hpy8I	GTNNAC	4 cut(s)	73, 318, 508, 702
Hpy99I	CGWCG	1 cut(s)	103
HpyAV	CCTTC	3 cut(s)	130, 292, 918
HpyCH4III	ACNGT	2 cut(s)	99, 752
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	3 cut(s)	246, 349, 942
HpyF10VI	GCNNNNNNNGC	1 cut(s)	807
HpyF3I	CTNAG	2 cut(s)	440, 725
HpySE526I	ACGT	1 cut(s)	66
Hsp92I	GRCGYC	1 cut(s)	367
Hsp92II	CATG	6 cut(s)	211, 365, 381, 410, 425, 506
HspAI	GCGC	1 cut(s)	107
KpnI	GGTACC	1 cut(s)	98
KroI	GCCGGC	1 cut(s)	103
KroNI	GCCGGC	1 cut(s)	105
Ksp22I	TGATCA	2 cut(s)	180, 201
Kzo9I	GATC	5 cut(s)	180, 201, 357, 567, 635
LmnI	GCTCC	1 cut(s)	934
Lsp1109I	GCAGC	2 cut(s)	64, 934
LweI	GCATC	1 cut(s)	233
MaeI	CTAG	1 cut(s)	341
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	2 cut(s)	43, 59
MalI	GATC	5 cut(s)	182, 203, 359, 569, 637
MboI	GATC	5 cut(s)	180, 201, 357, 567, 635
MboII	GAAGA	3 cut(s)	9, 303, 488
MflI	RGATCY	1 cut(s)	635
MhlI	GDGCHC	3 cut(s)	86, 340, 884
MlsI	TGGCCA	1 cut(s)	431
MluCI	AATT	4 cut(s)	459, 476, 492, 813
MluNI	TGGCCA	1 cut(s)	431
MlyI	GAGTC	2 cut(s)	451, 741
MnlI	CCTC	7 cut(s)	73, 99, 108, 138, 521, 722, 796
Mox20I	TGGCCA	1 cut(s)	431
Mph1103I	ATGCAT	1 cut(s)	248
MreI	CGCCGGCG	1 cut(s)	103
MroNI	GCCGGC	1 cut(s)	103
MscI	TGGCCA	1 cut(s)	431
MseI	TTAA	1 cut(s)	591
MslI	CAYNNNNRTG	2 cut(s)	191, 212
Msp20I	TGGCCA	1 cut(s)	431
MspA1I	CMGCKG	1 cut(s)	55
MspI	CCGG	4 cut(s)	77, 92, 104, 913
MspR9I	CCNGG	5 cut(s)	77, 374, 612, 757, 913
Mva1269I	GAATGC	1 cut(s)	607
MvaI	CCWGG	3 cut(s)	374, 612, 757
MwoI	GCNNNNNNNGC	1 cut(s)	807
NaeI	GCCGGC	1 cut(s)	105
NciI	CCSGG	2 cut(s)	77, 913
NcoI	CCATGG	1 cut(s)	361
NdeII	GATC	5 cut(s)	180, 201, 357, 567, 635
NgoMIV	GCCGGC	1 cut(s)	103
NlaIII	CATG	6 cut(s)	211, 365, 381, 410, 425, 506
NlaIV	GGNNCC	4 cut(s)	84, 96, 165, 306
NmuCI	GTSAC	2 cut(s)	43, 59
NsiI	ATGCAT	1 cut(s)	248
NspI	RCATGY	2 cut(s)	410, 506
PceI	AGGCCT	1 cut(s)	136
PciI	ACATGT	1 cut(s)	502
PctI	GAATGC	1 cut(s)	607
PdiI	GCCGGC	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	916
PflMI	CCANNNNNTGG	1 cut(s)	427
PfoI	TCCNGGA	1 cut(s)	911
PkrI	GCNGC	2 cut(s)	54, 924
PleI	GAGTC	2 cut(s)	450, 740
PpsI	GAGTC	2 cut(s)	450, 740
PpuMI	RGGWCCY	1 cut(s)	117
PscI	ACATGT	1 cut(s)	502
Psp5II	RGGWCCY	1 cut(s)	117
Psp6I	CCWGG	3 cut(s)	372, 610, 755
PspFI	CCCAGC	1 cut(s)	695
PspGI	CCWGG	3 cut(s)	372, 610, 755
PspN4I	GGNNCC	4 cut(s)	84, 96, 165, 306
PspOMI	GGGCCC	1 cut(s)	82
PspPI	GGNCC	5 cut(s)	70, 82, 83, 117, 305
PspPPI	RGGWCCY	1 cut(s)	117
PsuI	RGATCY	1 cut(s)	635
RsaI	GTAC	3 cut(s)	96, 426, 931
RsaNI	GTAC	3 cut(s)	95, 425, 930
RseI	CAYNNNNRTG	2 cut(s)	191, 212
SaqAI	TTAA	1 cut(s)	591
SatI	GCNGC	2 cut(s)	53, 923
Sau3AI	GATC	5 cut(s)	180, 201, 357, 567, 635
Sau96I	GGNCC	5 cut(s)	70, 82, 83, 117, 305
SchI	GAGTC	2 cut(s)	451, 741
ScrFI	CCNGG	5 cut(s)	77, 374, 612, 757, 913
SduI	GDGCHC	3 cut(s)	86, 340, 884
SfaNI	GCATC	1 cut(s)	233
SfcI	CTRYAG	1 cut(s)	130
SgrAI	CRCCGGYG	1 cut(s)	103
SinI	GGWCC	2 cut(s)	70, 117
SmiMI	CAYNNNNRTG	2 cut(s)	191, 212
SmlI	CTYRAG	2 cut(s)	467, 862
SmoI	CTYRAG	2 cut(s)	467, 862
Sse9I	AATT	4 cut(s)	459, 476, 492, 813
SseBI	AGGCCT	1 cut(s)	136
SsiI	CCGC	5 cut(s)	23, 50, 55, 382, 571
SspMI	CTAG	1 cut(s)	341
StuI	AGGCCT	1 cut(s)	136
StyD4I	CCNGG	5 cut(s)	75, 372, 610, 755, 911
StyI	CCWWGG	2 cut(s)	361, 550
TaaI	ACNGT	2 cut(s)	99, 752
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	1 cut(s)	113
TasI	AATT	4 cut(s)	459, 476, 492, 813
TatI	WGTACW	1 cut(s)	424
TfiI	GAWTC	1 cut(s)	916
Tru1I	TTAA	1 cut(s)	591
Tru9I	TTAA	1 cut(s)	591
TseFI	GTSAC	2 cut(s)	43, 59
TseI	GCWGC	2 cut(s)	52, 922
Tsp45I	GTSAC	2 cut(s)	43, 59
TspDTI	ATGAA	2 cut(s)	614, 879
TspGWI	ACGGA	1 cut(s)	947
Van91I	CCANNNNNTGG	1 cut(s)	427
VpaK11BI	GGWCC	2 cut(s)	70, 117
XapI	RAATTY	3 cut(s)	459, 476, 492
XbaI	TCTAGA	1 cut(s)	340
XceI	RCATGY	2 cut(s)	410, 506
XcmI	CCANNNNNNNNNTGG	1 cut(s)	789
XmiI	GTMKAC	1 cut(s)	701
XspI	CTAG	1 cut(s)	341
Zsp2I	ATGCAT	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.