Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002566

Physical Location & Seq

Genomic Coordinates Forward (+)

12477966 .. 12480374

Gene Structure 2409 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G29050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGCTCGCGATCGGCGGGAAGGTCTGGAGATCAAGGTGGTGAATCCACCGGCGGCGGCGACAAACAATGTGGCTGTAGAAACGTCTCCGGCGACGGCGACGAGGAGACGGAGACAACAACAACGAGCTTCGTTCGCTGAGTTTAGACCGTTTAAGCTTTGGTTTCCATGGCTTGTTCCAGCTATCGTGGTGGCTAACATTGCCCTTTTCGCCATTTCGATGTTTATTAACAATTGTCCTAAGAACTCGGCTTATTGCTTAGCTAGGTTTCTTGGGAGATTTGCTTTTCAGCCTATGAAAGAGAATCCTCTTCTGGGTCCTTCTTCTTTGACATTGGAGAAGATGGGGGCTTTAGATGTATCAATGGTGGTTCATAAGCACGAGGTGTGGCGCTTGTTCACTTGTATATGGCTACATGCTGGGGTTTTTCATGTTCTTGCCAACATGTTGAGCCTTATCTTCATTGGCATTCGACTTGAGCAAGAATTTGGATTTGTACGCATTGGATTGCTTTATATGATATCTGGATTTGGTGGAAGTTTGTTATCTTCTCTATTTAACCGGGCTGGTATATCCGTTGGTGCCTCTGGAGCATTATTCGGCTTGCTTGGTGCTATGCTTTCAGAGCTTCTCACTAATTGGACTATTTACGCTAATAAGTTTGCAGCTCTTTTGACACTCATCTTCATCATAGCCATTAATTTAGCAGTAGGTATTCTTCCACATGTAGACAACTTTGCCCATCTTGGAGGATTCACATCAGGGTTTCTTCTAGGCTTTGTTTTCTTGATACGTCCTCAGTATGGATACTTCAACCAGCGGAACAATCCTCGGGGTTATGCTGCACCGTCTGCTAAATCCAAACACAAGCCATACCAATACGTTCTTTGGATCACCTCTTTAGTGCTTTTAATAGCAGGATATACCGCTGGACTCGTAGTGCTTCTTCGAGGAACGGATCTAAACAAGCATTGTTCATGGTGCCATTATCTCAGCTGTATTCCTACGTCGCTTTGGAGCTGTAAATCTCAAAATGTCTACTGTGAGTCGAGCCAAATTGGGCAGCAGATGAACTTGACATGTATCACGAATGGGAAAACAGAGATGTACAAGCTCTCTAACGATATACCGTCTCGGATTCAGCAGTTGTGTTCCCAATTGTGCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0005911 GO:0006928 GO:0008150 GO:0008283 GO:0009506 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030054 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0055044 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0071944 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

389

Amino Acids

43.36

Weight (kDa)

9.64

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	127 - 263	1.2e-43	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29050 AT2G29050
fragaria_vesca	FvH4_3g36420 FvH4_3g36420 FvH4_3g36420 FvH4_3g36420
malus_domestica	MD00G1013900.v1.1 MD00G1178600.v1.1 MD00G1178800.v1.1 MD03G1090500.v1.1 MD11G1100200.v1.1 MD11G1101200.v1.1 MD11G1101800.v1.1 MD11G1102100.v1.1 MD11G1104300.v1.1 MD11G1105000.v1.1 MD11G1106000.v1.1 MD11G1106300.v1.1 MD11G1106700.v1.1 MD11G1106900.v1.1 MD11G1107000.v1.1 MD11G1107900.v1.1 MD11G1261200.v1.1 MD15G1402100.v1.1
prunus_persica	Prupe.6G074600_v2.0.a1
pyrus_communis	pycom03g07200 pycom11g08440
rosa_chinensis	RchiOBHm_Chr5g0065311
rosa_laevigata	RLG00000035780 RLG00000035781 RLG00000035782
rosa_multiflora	Rmu_sc0009942.1_g000006 Rmu_sc0013827.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015870
rosa_rugosa	Rorug05G0371200
rosa_samantha	Rh5AG429000 Rh5BG444300 Rh5CG466500 Rh5DG456600
rosa_wichuraiana	Rw5G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	581, 981
AccI	GTMKAC	2 cut(s)	729, 1038
AccII	CGCG	1 cut(s)	9
AciI	CCGC	5 cut(s)	16, 53, 56, 820, 927
AclWI	GGATC	2 cut(s)	899, 966
AcsI	RAATTY	1 cut(s)	485
AdeI	CACNNNGTG	1 cut(s)	385
AfaI	GTAC	2 cut(s)	498, 1109
AfiI	CCNNNNNNNGG	2 cut(s)	314, 803
AflIII	ACRYGT	3 cut(s)	444, 724, 1079
AgsI	TTSAA	1 cut(s)	814
AluBI	AGCT	9 cut(s)	128, 157, 182, 263, 628, 668, 996, 1020, 1114
AluI	AGCT	9 cut(s)	128, 157, 182, 263, 628, 668, 996, 1020, 1114
Alw26I	GTCTC	4 cut(s)	90, 100, 106, 1137
AlwI	GGATC	2 cut(s)	899, 966
Ama87I	CYCGRG	1 cut(s)	831
ApeKI	GCWGC	3 cut(s)	665, 842, 1063
ApoI	RAATTY	1 cut(s)	485
AseI	ATTAAT	1 cut(s)	699
AspLEI	GCGC	1 cut(s)	393
AspS9I	GGNCC	1 cut(s)	317
AsuC2I	CCSGG	1 cut(s)	563
AsuHPI	GGTGA	2 cut(s)	52, 886
AvaI	CYCGRG	1 cut(s)	831
AvaII	GGWCC	1 cut(s)	317
BanI	GGYRCC	2 cut(s)	581, 981
BarI	GAAGNNNNNNTAC	6 cut(s)	702, 734, 794, 826, 930, 962
BauI	CACGAG	1 cut(s)	380
BbvI	GCAGC	3 cut(s)	677, 829, 1075
BccI	CCATC	2 cut(s)	337, 750
BceAI	ACGGC	1 cut(s)	111
BciVI	GTATCC	1 cut(s)	800
BcnI	CCSGG	1 cut(s)	563
BcoDI	GTCTC	4 cut(s)	90, 100, 106, 1137
BfaI	CTAG	2 cut(s)	264, 773
BfmI	CTRYAG	1 cut(s)	75
BfoI	RGCGCY	1 cut(s)	394
BfuI	GTATCC	1 cut(s)	800
BisI	GCNGC	5 cut(s)	54, 57, 666, 843, 1064
BlpI	GCTNAGC	1 cut(s)	259
BlsI	GCNGC	5 cut(s)	55, 58, 667, 844, 1065
Bme1390I	CCNGG	1 cut(s)	563
Bme18I	GGWCC	1 cut(s)	317
BmeT110I	CYCGRG	1 cut(s)	831
BmgT120I	GGNCC	1 cut(s)	317
BmiI	GGNNCC	3 cut(s)	318, 583, 983
BmrFI	CCNGG	1 cut(s)	563
BpmI	CTGGAG	2 cut(s)	47, 609
Bpu1102I	GCTNAGC	1 cut(s)	259
BpuEI	CTTGAG	1 cut(s)	497
BpuMI	CCSGG	1 cut(s)	563
BsaBI	GATNNNNATC	1 cut(s)	757
BsaJI	CCNNGG	2 cut(s)	167, 830
Bsc4I	CCNNNNNNNGG	2 cut(s)	314, 803
Bse118I	RCCGGY	1 cut(s)	49
Bse3DI	GCAATG	1 cut(s)	198
Bse8I	GATNNNNATC	1 cut(s)	757
BseDI	CCNNGG	2 cut(s)	167, 830
BseJI	GATNNNNATC	1 cut(s)	757
BseLI	CCNNNNNNNGG	2 cut(s)	314, 803
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	3 cut(s)	129, 812, 1006
BseRI	GAGGAG	1 cut(s)	118
BseXI	GCAGC	3 cut(s)	677, 829, 1075
BseYI	CCCAGC	1 cut(s)	419
BsgI	GTGCAG	1 cut(s)	828
Bsh1236I	CGCG	1 cut(s)	9
Bsh1285I	CGRYCG	1 cut(s)	13
BshNI	GGYRCC	2 cut(s)	581, 981
BsiEI	CGRYCG	1 cut(s)	13
BsiHKCI	CYCGRG	1 cut(s)	831
BsiSI	CCGG	3 cut(s)	50, 89, 562
BslI	CCNNNNNNNGG	2 cut(s)	314, 803
BsmAI	GTCTC	4 cut(s)	90, 100, 106, 1137
BsmBI	CGTCTC	3 cut(s)	90, 100, 1137
BsmI	GAATGC	1 cut(s)	468
BsoBI	CYCGRG	1 cut(s)	831
Bsp1407I	TGTACA	1 cut(s)	1107
Bsp143I	GATC	4 cut(s)	10, 30, 891, 958
Bsp1720I	GCTNAGC	1 cut(s)	259
Bsp19I	CCATGG	1 cut(s)	167
Bsp68I	TCGCGA	1 cut(s)	9
BspACI	CCGC	5 cut(s)	16, 53, 56, 820, 927
BspCNI	CTCAG	3 cut(s)	130, 811, 1005
BspFNI	CGCG	1 cut(s)	9
BspLI	GGNNCC	3 cut(s)	318, 583, 983
BspPI	GGATC	2 cut(s)	899, 966
BspT107I	GGYRCC	2 cut(s)	581, 981
BsrDI	GCAATG	1 cut(s)	198
BsrFI	RCCGGY	1 cut(s)	49
BsrGI	TGTACA	1 cut(s)	1107
BssAI	RCCGGY	1 cut(s)	49
BssECI	CCNNGG	2 cut(s)	167, 830
BssMI	GATC	4 cut(s)	10, 30, 891, 958
BssSI	CACGAG	1 cut(s)	380
BssT1I	CCWWGG	1 cut(s)	167
Bst2BI	CACGAG	1 cut(s)	380
Bst4CI	ACNGT	4 cut(s)	150, 849, 1043, 1131
Bst6I	CTCTTC	1 cut(s)	315
BstAPI	GCANNNNNTGC	1 cut(s)	851
BstAUI	TGTACA	1 cut(s)	1107
BstC8I	GCNNGC	2 cut(s)	7, 605
BstDEI	CTNAG	5 cut(s)	138, 240, 259, 798, 992
BstDSI	CCRYGG	1 cut(s)	167
BstFNI	CGCG	1 cut(s)	9
BstH2I	RGCGCY	1 cut(s)	394
BstHHI	GCGC	1 cut(s)	393
BstKTI	GATC	4 cut(s)	13, 33, 894, 961
BstMAI	GTCTC	4 cut(s)	90, 100, 106, 1137
BstMBI	GATC	4 cut(s)	10, 30, 891, 958
BstMCI	CGRYCG	1 cut(s)	13
BstMWI	GCNNNNNNNGC	6 cut(s)	134, 200, 209, 590, 625, 851
BstNSI	RCATGY	4 cut(s)	419, 448, 728, 1083
BstSCI	CCNGG	1 cut(s)	561
BstSFI	CTRYAG	1 cut(s)	75
BstUI	CGCG	1 cut(s)	9
BstV1I	GCAGC	3 cut(s)	677, 829, 1075
BstX2I	RGATCY	1 cut(s)	958
BstYI	RGATCY	1 cut(s)	958
BsuI	GTATCC	1 cut(s)	800
BtgI	CCRYGG	1 cut(s)	167
BtuMI	TCGCGA	1 cut(s)	9
Cac8I	GCNNGC	2 cut(s)	7, 605
CfoI	GCGC	1 cut(s)	393
Cfr10I	RCCGGY	1 cut(s)	49
Cfr13I	GGNCC	1 cut(s)	317
Csp6I	GTAC	2 cut(s)	497, 1108
CspCI	CAANNNNNGTGG	2 cut(s)	51, 86
CviAII	CATG	7 cut(s)	168, 416, 431, 445, 725, 978, 1080
CviQI	GTAC	2 cut(s)	497, 1108
DdeI	CTNAG	5 cut(s)	138, 240, 259, 798, 992
DpnI	GATC	4 cut(s)	12, 32, 893, 960
DpnII	GATC	4 cut(s)	10, 30, 891, 958
DraIII	CACNNNGTG	1 cut(s)	385
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
Eco130I	CCWWGG	1 cut(s)	167
Eco32I	GATATC	1 cut(s)	522
Eco47I	GGWCC	1 cut(s)	317
Eco88I	CYCGRG	1 cut(s)	831
EcoO109I	RGGNCCY	1 cut(s)	317
EcoRV	GATATC	1 cut(s)	522
EcoT14I	CCWWGG	1 cut(s)	167
ErhI	CCWWGG	1 cut(s)	167
Esp3I	CGTCTC	3 cut(s)	90, 100, 1137
FaeI	CATG	7 cut(s)	171, 419, 434, 448, 728, 981, 1083
FatI	CATG	7 cut(s)	167, 415, 430, 444, 724, 977, 1079
FauI	CCCGC	1 cut(s)	9
FblI	GTMKAC	2 cut(s)	729, 1038
Fnu4HI	GCNGC	5 cut(s)	54, 57, 666, 843, 1064
Fsp4HI	GCNGC	5 cut(s)	54, 57, 666, 843, 1064
FspBI	CTAG	2 cut(s)	264, 773
GlaI	GCGC	1 cut(s)	392
GluI	GCNGC	5 cut(s)	54, 57, 666, 843, 1064
GsaI	CCCAGC	1 cut(s)	423
GsuI	CTGGAG	2 cut(s)	47, 609
HaeII	RGCGCY	1 cut(s)	394
HapII	CCGG	3 cut(s)	50, 89, 562
HhaI	GCGC	1 cut(s)	393
Hin1II	CATG	7 cut(s)	171, 419, 434, 448, 728, 981, 1083
Hin6I	GCGC	1 cut(s)	391
HinP1I	GCGC	1 cut(s)	391
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	6 cut(s)	43, 304, 753, 933, 1046, 1138
HpaII	CCGG	3 cut(s)	50, 89, 562
HphI	GGTGA	2 cut(s)	52, 886
Hpy166II	GTNNAC	3 cut(s)	399, 730, 1039
Hpy188I	TCNGA	2 cut(s)	625, 1137
Hpy188III	TCNNGA	6 cut(s)	8, 26, 525, 588, 787, 1087
Hpy8I	GTNNAC	3 cut(s)	399, 730, 1039
Hpy99I	CGWCG	3 cut(s)	97, 103, 1012
HpyAV	CCTTC	2 cut(s)	14, 330
HpyCH4III	ACNGT	4 cut(s)	150, 849, 1043, 1131
HpyCH4IV	ACGT	4 cut(s)	83, 793, 882, 1007
HpyCH4V	TGCA	3 cut(s)	665, 845, 1164
HpyF10VI	GCNNNNNNNGC	6 cut(s)	134, 200, 209, 590, 625, 851
HpyF3I	CTNAG	5 cut(s)	138, 240, 259, 798, 992
HpySE526I	ACGT	4 cut(s)	83, 793, 882, 1007
Hsp92II	CATG	7 cut(s)	171, 419, 434, 448, 728, 981, 1083
HspAI	GCGC	1 cut(s)	391
Kzo9I	GATC	4 cut(s)	10, 30, 891, 958
LmnI	GCTCC	2 cut(s)	590, 1017
Lsp1109I	GCAGC	3 cut(s)	677, 829, 1075
MaeI	CTAG	2 cut(s)	264, 773
MaeII	ACGT	4 cut(s)	83, 793, 882, 1007
MalI	GATC	4 cut(s)	12, 32, 893, 960
MboI	GATC	4 cut(s)	10, 30, 891, 958
MboII	GAAGA	9 cut(s)	302, 315, 352, 451, 540, 676, 710, 761, 938
MfeI	CAATTG	2 cut(s)	232, 1157
MflI	RGATCY	1 cut(s)	958
MluCI	AATT	6 cut(s)	232, 485, 637, 700, 1056, 1157
MlyI	GAGTC	2 cut(s)	927, 1055
MnlI	CCTC	9 cut(s)	96, 318, 376, 595, 743, 807, 840, 907, 944
MseI	TTAA	5 cut(s)	153, 228, 558, 699, 911
MslI	CAYNNNNRTG	1 cut(s)	218
MspA1I	CMGCKG	3 cut(s)	820, 929, 996
MspI	CCGG	3 cut(s)	50, 89, 562
MspR9I	CCNGG	1 cut(s)	563
MunI	CAATTG	2 cut(s)	232, 1157
Mva1269I	GAATGC	1 cut(s)	468
MvnI	CGCG	1 cut(s)	9
MwoI	GCNNNNNNNGC	6 cut(s)	134, 200, 209, 590, 625, 851
NciI	CCSGG	1 cut(s)	563
NcoI	CCATGG	1 cut(s)	167
NdeII	GATC	4 cut(s)	10, 30, 891, 958
NlaIII	CATG	7 cut(s)	171, 419, 434, 448, 728, 981, 1083
NlaIV	GGNNCC	3 cut(s)	318, 583, 983
NmeAIII	GCCGAG	1 cut(s)	227
NruI	TCGCGA	1 cut(s)	9
NspI	RCATGY	4 cut(s)	419, 448, 728, 1083
PciI	ACATGT	3 cut(s)	444, 724, 1079
PcsI	WCGNNNNNNNCGW	1 cut(s)	89
PctI	GAATGC	1 cut(s)	468
PfeI	GAWTC	4 cut(s)	43, 304, 753, 1138
PkrI	GCNGC	5 cut(s)	55, 58, 667, 844, 1065
Ple19I	CGATCG	1 cut(s)	13
PleI	GAGTC	2 cut(s)	927, 1054
PpsI	GAGTC	2 cut(s)	927, 1054
PpuMI	RGGWCCY	1 cut(s)	317
PscI	ACATGT	3 cut(s)	444, 724, 1079
PshBI	ATTAAT	1 cut(s)	699
Psp5II	RGGWCCY	1 cut(s)	317
PspFI	CCCAGC	1 cut(s)	419
PspN4I	GGNNCC	3 cut(s)	318, 583, 983
PspPI	GGNCC	1 cut(s)	317
PspPPI	RGGWCCY	1 cut(s)	317
PsuI	RGATCY	1 cut(s)	958
PvuI	CGATCG	1 cut(s)	13
PvuII	CAGCTG	1 cut(s)	996
RruI	TCGCGA	1 cut(s)	9
RsaI	GTAC	2 cut(s)	498, 1109
RsaNI	GTAC	2 cut(s)	497, 1108
RseI	CAYNNNNRTG	1 cut(s)	218
SaqAI	TTAA	5 cut(s)	153, 228, 558, 699, 911
SatI	GCNGC	5 cut(s)	54, 57, 666, 843, 1064
Sau3AI	GATC	4 cut(s)	10, 30, 891, 958
Sau96I	GGNCC	1 cut(s)	317
SchI	GAGTC	2 cut(s)	927, 1055
ScrFI	CCNGG	1 cut(s)	563
SfcI	CTRYAG	1 cut(s)	75
SgrAI	CRCCGGYG	1 cut(s)	49
SinI	GGWCC	1 cut(s)	317
SmiMI	CAYNNNNRTG	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
Sse9I	AATT	6 cut(s)	232, 485, 637, 700, 1056, 1157
SsiI	CCGC	5 cut(s)	16, 53, 56, 820, 927
SspMI	CTAG	2 cut(s)	264, 773
StyD4I	CCNGG	1 cut(s)	561
StyI	CCWWGG	1 cut(s)	167
TaaI	ACNGT	4 cut(s)	150, 849, 1043, 1131
TaiI	ACGT	4 cut(s)	86, 796, 885, 1010
TaqI	TCGA	4 cut(s)	218, 472, 949, 1049
TasI	AATT	6 cut(s)	232, 485, 637, 700, 1056, 1157
TatI	WGTACW	1 cut(s)	1107
TauI	GCSGC	2 cut(s)	56, 59
TfiI	GAWTC	4 cut(s)	43, 304, 753, 1138
Tru1I	TTAA	5 cut(s)	153, 228, 558, 699, 911
Tru9I	TTAA	5 cut(s)	153, 228, 558, 699, 911
TseI	GCWGC	3 cut(s)	665, 842, 1063
TspDTI	ATGAA	7 cut(s)	311, 362, 419, 451, 676, 966, 1085
TspGWI	ACGGA	3 cut(s)	124, 565, 971
VpaK11BI	GGWCC	1 cut(s)	317
VspI	ATTAAT	1 cut(s)	699
XapI	RAATTY	1 cut(s)	485
XceI	RCATGY	4 cut(s)	419, 448, 728, 1083
XmiI	GTMKAC	2 cut(s)	729, 1038
XspI	CTAG	2 cut(s)	264, 773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.