Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002566

Physical Location & Seq

Genomic Coordinates Reverse (-)

37604652 .. 37606691

Gene Structure 2040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1261200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGACAGGTCTACCTCAACCTACTCTGATTGAGACCGACAGAACAACCCTCCTAAGTGCGAATTACAGAAATGCCCATAACTTGTGGCCGTTGGATGTGGAATCAAGCAGGGAAAATGGTAATTTCACTTCCCCACTCTCACTCCGGAATCGAAGATCCGCACCAAATCTCTCAATCTCTGTCTCTCTCTGCAAGCGACATGGTTGTCCCCCTCTGTCTACTCTAGAAGCGGTTAGAAAAGGTGGGTACTCTAGACGCGCAGAGAGTGGTTCATCAACGATCTCATGTACGTGGTTACATGGTGGAGTTTTCCATGTGCTTGCCAATATGCTGAGTCTTGTATTCATTGGAATTTGGCTTGAGCAAGAATTTGGATTTTTTCGAATTGGTTTCCTATATCTCATGTCTGGTTTTGGTGGGAGTTTGCTTTCAGCTCTTTTTATTCAATATGGTATTTCTGTTGGTGCTTCTGGTGCACGTTTTGGTTTACTGGGAAGCATGCTTTCAGAGCTCATATCAAATTGGACAATGTATGTAAATAAGTTTAAATGGCTTACCCAACGGAATGCTCCCCCTAGACGTGTTACTACTCCAGTTAAATCTAAACCCAATACGTATCAATATGTATTGTGGGTCCTCTCTTTGATACTATTGATTGTTGGGTATACTCTTGGCCGGGTTACTCTTTTTCGAGGGGTCAATCTAAACAATCACTGTTCCTGGTGTCATTATTTGAGCAATGTCCCTACGTCAAAATGGAATTGCAAGTCAAAAAATATTTATTGTTTGGTATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006928 GO:0008150 GO:0008283 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

266

Amino Acids

29.73

Weight (kDa)

9.88

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	93 - 184	1e-23	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29050 AT2G29050
fragaria_vesca	FvH4_3g36420 FvH4_3g36420 FvH4_3g36420 FvH4_3g36420
malus_domestica	MD00G1013900.v1.1 MD00G1178600.v1.1 MD00G1178800.v1.1 MD03G1090500.v1.1 MD11G1100200.v1.1 MD11G1101200.v1.1 MD11G1101800.v1.1 MD11G1102100.v1.1 MD11G1104300.v1.1 MD11G1105000.v1.1 MD11G1106000.v1.1 MD11G1106300.v1.1 MD11G1106700.v1.1 MD11G1106900.v1.1 MD11G1107000.v1.1 MD11G1107900.v1.1 MD11G1261200.v1.1 MD15G1402100.v1.1
prunus_persica	Prupe.6G074600_v2.0.a1
pyrus_communis	pycom03g07200 pycom11g08440
rosa_chinensis	RchiOBHm_Chr5g0065311
rosa_laevigata	RLG00000035780 RLG00000035781 RLG00000035782
rosa_multiflora	Rmu_sc0009942.1_g000006 Rmu_sc0013827.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015870
rosa_rugosa	Rorug05G0371200
rosa_samantha	Rh5AG429000 Rh5BG444300 Rh5CG466500 Rh5DG456600
rosa_wichuraiana	Rw5G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	204
AccI	GTMKAC	3 cut(s)	10, 218, 665
AccII	CGCG	1 cut(s)	258
AccIII	TCCGGA	1 cut(s)	144
AciI	CCGC	2 cut(s)	159, 230
AclWI	GGATC	1 cut(s)	150
AcoI	YGGCCR	2 cut(s)	86, 673
AcsI	RAATTY	2 cut(s)	351, 368
AfaI	GTAC	2 cut(s)	248, 289
AflIII	ACRYGT	1 cut(s)	580
AgsI	TTSAA	1 cut(s)	446
AjiI	CACGTC	1 cut(s)	581
AjnI	CCWGG	1 cut(s)	719
AluBI	AGCT	2 cut(s)	434, 511
AluI	AGCT	2 cut(s)	434, 511
Alw21I	GWGCWC	2 cut(s)	478, 513
Alw26I	GTCTC	2 cut(s)	26, 187
Alw44I	GTGCAC	1 cut(s)	474
AlwI	GGATC	1 cut(s)	150
Aor13HI	TCCGGA	1 cut(s)	144
AoxI	GGCC	2 cut(s)	86, 673
ApaLI	GTGCAC	1 cut(s)	474
ApoI	RAATTY	2 cut(s)	351, 368
AspLEI	GCGC	1 cut(s)	260
AspS9I	GGNCC	1 cut(s)	634
AsuC2I	CCSGG	1 cut(s)	677
AsuII	TTCGAA	1 cut(s)	382
AvaII	GGWCC	1 cut(s)	634
BaeGI	GKGCMC	1 cut(s)	478
BanII	GRGCYC	1 cut(s)	513
BarI	GAAGNNNNNNTAC	2 cut(s)	112, 144
Bbv12I	GWGCWC	2 cut(s)	478, 513
BceAI	ACGGC	1 cut(s)	73
BciT130I	CCWGG	1 cut(s)	721
BcnI	CCSGG	1 cut(s)	677
BcoDI	GTCTC	2 cut(s)	26, 187
BfaI	CTAG	3 cut(s)	224, 252, 576
Bme1390I	CCNGG	2 cut(s)	677, 721
Bme18I	GGWCC	1 cut(s)	634
BmgBI	CACGTC	1 cut(s)	581
BmgT120I	GGNCC	1 cut(s)	634
BmiI	GGNNCC	1 cut(s)	635
BmrFI	CCNGG	2 cut(s)	677, 721
BmrI	ACTGGG	1 cut(s)	500
BmuI	ACTGGG	1 cut(s)	500
BpmI	CTGGAG	1 cut(s)	576
Bpu14I	TTCGAA	1 cut(s)	382
BpuEI	CTTGAG	1 cut(s)	380
BpuMI	CCSGG	1 cut(s)	677
BsaAI	YACGTR	2 cut(s)	291, 615
BsaI	GGTCTC	1 cut(s)	26
BsaWI	WCCGGW	1 cut(s)	144
BsaXI	ACNNNNNCTCC	2 cut(s)	126, 156
Bse1I	ACTGG	2 cut(s)	495, 593
Bse3DI	GCAATG	1 cut(s)	745
BseAI	TCCGGA	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	721
BseGI	GGATG	1 cut(s)	100
BseMI	GCAATG	1 cut(s)	745
BseMII	CTCAG	1 cut(s)	323
BseNI	ACTGG	2 cut(s)	495, 593
BseSI	GKGCMC	1 cut(s)	478
Bsh1236I	CGCG	1 cut(s)	258
BshFI	GGCC	2 cut(s)	88, 675
BsiHKAI	GWGCWC	2 cut(s)	478, 513
BsiSI	CCGG	2 cut(s)	145, 676
BslFI	GGGAC	2 cut(s)	192, 728
BsmAI	GTCTC	2 cut(s)	26, 187
BsmFI	GGGAC	2 cut(s)	192, 728
BsmI	GAATGC	1 cut(s)	571
BsnI	GGCC	2 cut(s)	88, 675
Bso31I	GGTCTC	1 cut(s)	26
Bsp119I	TTCGAA	1 cut(s)	382
Bsp1286I	GDGCHC	2 cut(s)	478, 513
Bsp13I	TCCGGA	1 cut(s)	144
Bsp143I	GATC	2 cut(s)	155, 279
BspACI	CCGC	2 cut(s)	159, 230
BspANI	GGCC	2 cut(s)	88, 675
BspCNI	CTCAG	1 cut(s)	324
BspEI	TCCGGA	1 cut(s)	144
BspFNI	CGCG	1 cut(s)	258
BspLI	GGNNCC	1 cut(s)	635
BspPI	GGATC	1 cut(s)	150
BspT104I	TTCGAA	1 cut(s)	382
BspTNI	GGTCTC	1 cut(s)	26
BsrDI	GCAATG	1 cut(s)	745
BsrI	ACTGG	2 cut(s)	495, 593
BssMI	GATC	2 cut(s)	155, 279
BssNAI	GTATAC	1 cut(s)	666
Bst1107I	GTATAC	1 cut(s)	666
Bst2UI	CCWGG	1 cut(s)	721
Bst4CI	ACNGT	1 cut(s)	716
BstBAI	YACGTR	2 cut(s)	291, 615
BstBI	TTCGAA	1 cut(s)	382
BstC8I	GCNNGC	3 cut(s)	194, 321, 500
BstDEI	CTNAG	2 cut(s)	53, 332
BstF5I	GGATG	1 cut(s)	100
BstFNI	CGCG	1 cut(s)	258
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	2 cut(s)	158, 282
BstMAI	GTCTC	2 cut(s)	26, 187
BstMBI	GATC	2 cut(s)	155, 279
BstMWI	GCNNNNNNNGC	2 cut(s)	473, 508
BstNI	CCWGG	1 cut(s)	721
BstNSI	RCATGY	1 cut(s)	502
BstSCI	CCNGG	2 cut(s)	675, 719
BstSLI	GKGCMC	1 cut(s)	478
BstSNI	TACGTA	1 cut(s)	615
BstUI	CGCG	1 cut(s)	258
BstX2I	RGATCY	1 cut(s)	155
BstYI	RGATCY	1 cut(s)	155
BstZ17I	GTATAC	1 cut(s)	666
BsuRI	GGCC	2 cut(s)	88, 675
BtrI	CACGTC	1 cut(s)	581
BtsCI	GGATG	1 cut(s)	100
BtsIMutI	CAGTG	1 cut(s)	712
Cac8I	GCNNGC	3 cut(s)	194, 321, 500
CfoI	GCGC	1 cut(s)	260
Cfr13I	GGNCC	1 cut(s)	634
CseI	GACGC	1 cut(s)	264
Csp6I	GTAC	2 cut(s)	247, 288
CviAII	CATG	6 cut(s)	200, 285, 299, 314, 403, 499
CviJI	RGCY	6 cut(s)	88, 358, 434, 511, 553, 675
CviKI_1	RGCY	6 cut(s)	88, 358, 434, 511, 553, 675
CviQI	GTAC	2 cut(s)	247, 288
DdeI	CTNAG	2 cut(s)	53, 332
DpnI	GATC	2 cut(s)	157, 281
DpnII	GATC	2 cut(s)	155, 279
DraI	TTTAAA	1 cut(s)	547
DrdI	GACNNNNNNGTC	1 cut(s)	204
DseDI	GACNNNNNNGTC	1 cut(s)	204
EaeI	YGGCCR	2 cut(s)	86, 673
Ecl136II	GAGCTC	1 cut(s)	511
Eco105I	TACGTA	1 cut(s)	615
Eco24I	GRGCYC	1 cut(s)	513
Eco31I	GGTCTC	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	634
Eco53kI	GAGCTC	1 cut(s)	511
EcoICRI	GAGCTC	1 cut(s)	511
EcoO109I	RGGNCCY	1 cut(s)	634
EcoRII	CCWGG	1 cut(s)	719
EcoT38I	GRGCYC	1 cut(s)	513
FaeI	CATG	6 cut(s)	203, 288, 302, 317, 406, 502
FaqI	GGGAC	2 cut(s)	192, 728
FatI	CATG	6 cut(s)	199, 284, 298, 313, 402, 498
FblI	GTMKAC	3 cut(s)	10, 218, 665
FokI	GGATG	1 cut(s)	107
FriOI	GRGCYC	1 cut(s)	513
FspBI	CTAG	3 cut(s)	224, 252, 576
GlaI	GCGC	1 cut(s)	259
GsuI	CTGGAG	1 cut(s)	576
HaeIII	GGCC	2 cut(s)	88, 675
HapII	CCGG	2 cut(s)	145, 676
HgaI	GACGC	1 cut(s)	264
HhaI	GCGC	1 cut(s)	260
Hin1II	CATG	6 cut(s)	203, 288, 302, 317, 406, 502
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HinfI	GANTC	3 cut(s)	101, 148, 334
HpaII	CCGG	2 cut(s)	145, 676
Hpy166II	GTNNAC	5 cut(s)	11, 219, 476, 488, 666
Hpy188I	TCNGA	2 cut(s)	27, 508
Hpy188III	TCNNGA	3 cut(s)	145, 224, 252
Hpy8I	GTNNAC	5 cut(s)	11, 219, 476, 488, 666
HpyCH4III	ACNGT	1 cut(s)	716
HpyCH4IV	ACGT	5 cut(s)	290, 478, 580, 614, 749
HpyCH4V	TGCA	3 cut(s)	192, 476, 765
HpyF10VI	GCNNNNNNNGC	2 cut(s)	473, 508
HpyF3I	CTNAG	2 cut(s)	53, 332
HpySE526I	ACGT	5 cut(s)	290, 478, 580, 614, 749
Hsp92II	CATG	6 cut(s)	203, 288, 302, 317, 406, 502
HspAI	GCGC	1 cut(s)	258
Kpn2I	TCCGGA	1 cut(s)	144
Kzo9I	GATC	2 cut(s)	155, 279
LmnI	GCTCC	1 cut(s)	574
LpnPI	CCDG	9 cut(s)	94, 158, 393, 456, 476, 606, 689, 706, 733
MaeI	CTAG	3 cut(s)	224, 252, 576
MaeII	ACGT	5 cut(s)	290, 478, 580, 614, 749
MaeIII	GTNAC	3 cut(s)	294, 583, 679
MalI	GATC	2 cut(s)	157, 281
MboI	GATC	2 cut(s)	155, 279
MboII	GAAGA	1 cut(s)	165
MflI	RGATCY	1 cut(s)	155
MhlI	GDGCHC	2 cut(s)	478, 513
MluCI	AATT	7 cut(s)	61, 121, 351, 368, 384, 520, 760
MlyI	GAGTC	1 cut(s)	343
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	5 cut(s)	24, 59, 222, 647, 686
MroI	TCCGGA	1 cut(s)	144
MseI	TTAA	3 cut(s)	546, 597, 796
MslI	CAYNNNNRTG	1 cut(s)	289
MspI	CCGG	2 cut(s)	145, 676
MspR9I	CCNGG	2 cut(s)	677, 721
Mva1269I	GAATGC	1 cut(s)	571
MvaI	CCWGG	1 cut(s)	721
MvnI	CGCG	1 cut(s)	258
MwoI	GCNNNNNNNGC	2 cut(s)	473, 508
NciI	CCSGG	1 cut(s)	677
NdeII	GATC	2 cut(s)	155, 279
NlaIII	CATG	6 cut(s)	203, 288, 302, 317, 406, 502
NlaIV	GGNNCC	1 cut(s)	635
NspI	RCATGY	1 cut(s)	502
NspV	TTCGAA	1 cut(s)	382
PaeI	GCATGC	1 cut(s)	502
PctI	GAATGC	1 cut(s)	571
PfeI	GAWTC	2 cut(s)	101, 148
PleI	GAGTC	1 cut(s)	342
PpsI	GAGTC	1 cut(s)	342
Ppu21I	YACGTR	2 cut(s)	291, 615
PpuMI	RGGWCCY	1 cut(s)	634
Psp124BI	GAGCTC	1 cut(s)	513
Psp5II	RGGWCCY	1 cut(s)	634
Psp6I	CCWGG	1 cut(s)	719
PspGI	CCWGG	1 cut(s)	719
PspN4I	GGNNCC	1 cut(s)	635
PspPI	GGNCC	1 cut(s)	634
PspPPI	RGGWCCY	1 cut(s)	634
PsuI	RGATCY	1 cut(s)	155
RsaI	GTAC	2 cut(s)	248, 289
RsaNI	GTAC	2 cut(s)	247, 288
RseI	CAYNNNNRTG	1 cut(s)	289
SacI	GAGCTC	1 cut(s)	513
SaqAI	TTAA	3 cut(s)	546, 597, 796
Sau3AI	GATC	2 cut(s)	155, 279
Sau96I	GGNCC	1 cut(s)	634
SchI	GAGTC	1 cut(s)	343
ScrFI	CCNGG	2 cut(s)	677, 721
SduI	GDGCHC	2 cut(s)	478, 513
SfuI	TTCGAA	1 cut(s)	382
SinI	GGWCC	1 cut(s)	634
SmiMI	CAYNNNNRTG	1 cut(s)	289
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
SnaBI	TACGTA	1 cut(s)	615
SphI	GCATGC	1 cut(s)	502
Sse9I	AATT	7 cut(s)	61, 121, 351, 368, 384, 520, 760
SsiI	CCGC	2 cut(s)	159, 230
SspI	AATATT	1 cut(s)	778
SspMI	CTAG	3 cut(s)	224, 252, 576
SstI	GAGCTC	1 cut(s)	513
StyD4I	CCNGG	2 cut(s)	675, 719
TaaI	ACNGT	1 cut(s)	716
TaiI	ACGT	5 cut(s)	293, 481, 583, 617, 752
TaqI	TCGA	3 cut(s)	151, 382, 691
TaqII	GACCGA	1 cut(s)	50
TasI	AATT	7 cut(s)	61, 121, 351, 368, 384, 520, 760
TfiI	GAWTC	2 cut(s)	101, 148
Tru1I	TTAA	3 cut(s)	546, 597, 796
Tru9I	TTAA	3 cut(s)	546, 597, 796
TscAI	CASTG	1 cut(s)	719
TspDTI	ATGAA	2 cut(s)	261, 334
TspGWI	ACGGA	1 cut(s)	577
TspRI	CASTG	1 cut(s)	719
VneI	GTGCAC	1 cut(s)	474
VpaK11BI	GGWCC	1 cut(s)	634
XapI	RAATTY	2 cut(s)	351, 368
XbaI	TCTAGA	2 cut(s)	223, 251
XceI	RCATGY	1 cut(s)	502
XmiI	GTMKAC	3 cut(s)	10, 218, 665
XspI	CTAG	3 cut(s)	224, 252, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.