Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002566

Physical Location & Seq

Genomic Coordinates Forward (+)

8949665 .. 8952369

Gene Structure 2705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1105000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGAGGCAGCAGTCCTTGCGATCATTATCCCAGACTTGTGGATTTGGTGGAAGGGATTCGGAGTCCTTTCCGTTGAAAATCTCATCTCCTCTCCTTTCAGCCCTTCAAGGAAAACTCACTTCTTGGGCCGTCTTCAACCACGTTAGAAAAGATGGGTGCTCTAGATGCGCAGAGAGTGGTTCATCAACACCAAGGTGGCGGCTGATCTCATGTATGTGGTTACATGCTGGAGTTTTCCACGTGCTTGCCAATATGCTGAGTCTTGTATTCATTGGAATTTGGCTTGAGCAAGAATTTGGATTTGTTCGAATTGGTTTCCTATATCTCATGTCTGGTTTTGGTGGGAGTTTGCTTTCAGCTCTTTTTATTCAATATGGTATTTCTTTAGCAGCATTGCTTACTCTCCTTTTCATCATCATAATAAACTTAGCATTGGAAATTCTACCACACATGGACAACTTTGCTCATATTGGAGGATTTGTCTCCGGATTTCTTCTTGGATTTTTGTTTTTGATCCACCCACAGTTTAAATGGCTTACCCAATGGAATGCTCCCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006928 GO:0008150 GO:0008283 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

187

Amino Acids

20.73

Weight (kDa)

9.13

Isoelectric Point (pI)

47.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	66 - 126	1.4e-17	Rhomboid domain
Rhomboid	PF01694	129 - 171	2e-06	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29050 AT2G29050
fragaria_vesca	FvH4_3g36420 FvH4_3g36420 FvH4_3g36420 FvH4_3g36420
malus_domestica	MD00G1013900.v1.1 MD00G1178600.v1.1 MD00G1178800.v1.1 MD03G1090500.v1.1 MD11G1100200.v1.1 MD11G1101200.v1.1 MD11G1101800.v1.1 MD11G1102100.v1.1 MD11G1104300.v1.1 MD11G1105000.v1.1 MD11G1106000.v1.1 MD11G1106300.v1.1 MD11G1106700.v1.1 MD11G1106900.v1.1 MD11G1107000.v1.1 MD11G1107900.v1.1 MD11G1261200.v1.1 MD15G1402100.v1.1
prunus_persica	Prupe.6G074600_v2.0.a1
pyrus_communis	pycom03g07200 pycom11g08440
rosa_chinensis	RchiOBHm_Chr5g0065311
rosa_laevigata	RLG00000035780 RLG00000035781 RLG00000035782
rosa_multiflora	Rmu_sc0009942.1_g000006 Rmu_sc0013827.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015870
rosa_rugosa	Rorug05G0371200
rosa_samantha	Rh5AG429000 Rh5BG444300 Rh5CG466500 Rh5DG456600
rosa_wichuraiana	Rw5G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	169
AccIII	TCCGGA	1 cut(s)	485
AciI	CCGC	1 cut(s)	199
AclWI	GGATC	1 cut(s)	508
AcsI	RAATTY	3 cut(s)	276, 293, 438
AcvI	CACGTG	1 cut(s)	241
AgsI	TTSAA	4 cut(s)	76, 107, 136, 371
AleI	CACNNNNGTG	1 cut(s)	193
AluBI	AGCT	1 cut(s)	359
AluI	AGCT	1 cut(s)	359
Alw21I	GWGCWC	1 cut(s)	161
Alw26I	GTCTC	1 cut(s)	487
AlwI	GGATC	1 cut(s)	508
Aor13HI	TCCGGA	1 cut(s)	485
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	2 cut(s)	7, 389
ApoI	RAATTY	3 cut(s)	276, 293, 438
Asp700I	GAANNNNTTC	1 cut(s)	55
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	126
AsuII	TTCGAA	1 cut(s)	307
BbrPI	CACGTG	1 cut(s)	241
BbsI	GAAGAC	1 cut(s)	124
Bbv12I	GWGCWC	1 cut(s)	161
BbvI	GCAGC	2 cut(s)	19, 401
BccI	CCATC	1 cut(s)	146
BceAI	ACGGC	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	487
BfaI	CTAG	1 cut(s)	162
BisI	GCNGC	3 cut(s)	8, 200, 390
BlsI	GCNGC	3 cut(s)	9, 201, 391
BmgT120I	GGNCC	1 cut(s)	126
BmsI	GCATC	1 cut(s)	155
BpiI	GAAGAC	1 cut(s)	124
BpmI	CTGGAG	1 cut(s)	249
Bpu14I	TTCGAA	1 cut(s)	307
BpuEI	CTTGAG	1 cut(s)	305
BsaAI	YACGTR	1 cut(s)	241
BsaBI	GATNNNNATC	1 cut(s)	25
BsaJI	CCNNGG	1 cut(s)	191
BsaWI	WCCGGW	1 cut(s)	485
BsaXI	ACNNNNNCTCC	2 cut(s)	465, 495
Bse3DI	GCAATG	1 cut(s)	392
Bse8I	GATNNNNATC	1 cut(s)	25
BseAI	TCCGGA	1 cut(s)	485
BseDI	CCNNGG	1 cut(s)	191
BseJI	GATNNNNATC	1 cut(s)	25
BseMI	GCAATG	1 cut(s)	392
BseMII	CTCAG	1 cut(s)	248
BseRI	GAGGAG	1 cut(s)	78
BseXI	GCAGC	2 cut(s)	19, 401
BshFI	GGCC	1 cut(s)	128
BsiHKAI	GWGCWC	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	486
BsmAI	GTCTC	1 cut(s)	487
BsmI	GAATGC	1 cut(s)	553
BsnI	GGCC	1 cut(s)	128
Bsp119I	TTCGAA	1 cut(s)	307
Bsp1286I	GDGCHC	1 cut(s)	161
Bsp13I	TCCGGA	1 cut(s)	485
Bsp143I	GATC	3 cut(s)	20, 204, 513
BspACI	CCGC	1 cut(s)	199
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	1 cut(s)	249
BspEI	TCCGGA	1 cut(s)	485
BspPI	GGATC	1 cut(s)	508
BspT104I	TTCGAA	1 cut(s)	307
BsrDI	GCAATG	1 cut(s)	392
BssECI	CCNNGG	1 cut(s)	191
BssMI	GATC	3 cut(s)	20, 204, 513
BssT1I	CCWWGG	1 cut(s)	191
Bst4CI	ACNGT	1 cut(s)	525
BstAPI	GCANNNNNTGC	1 cut(s)	16
BstBAI	YACGTR	1 cut(s)	241
BstBI	TTCGAA	1 cut(s)	307
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	2 cut(s)	257, 427
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	3 cut(s)	23, 207, 516
BstMAI	GTCTC	1 cut(s)	487
BstMBI	GATC	3 cut(s)	20, 204, 513
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 165
BstNSI	RCATGY	1 cut(s)	227
BstV1I	GCAGC	2 cut(s)	19, 401
BstV2I	GAAGAC	1 cut(s)	124
BstXI	CCANNNNNNTGG	1 cut(s)	38
BsuRI	GGCC	1 cut(s)	128
Cac8I	GCNNGC	1 cut(s)	246
CfoI	GCGC	1 cut(s)	170
Cfr13I	GGNCC	1 cut(s)	126
CviAII	CATG	4 cut(s)	210, 224, 328, 451
CviJI	RGCY	6 cut(s)	101, 128, 202, 283, 359, 535
CviKI_1	RGCY	6 cut(s)	101, 128, 202, 283, 359, 535
DdeI	CTNAG	2 cut(s)	257, 427
DpnI	GATC	3 cut(s)	22, 206, 515
DpnII	GATC	3 cut(s)	20, 204, 513
DraI	TTTAAA	1 cut(s)	529
Eco130I	CCWWGG	1 cut(s)	191
Eco72I	CACGTG	1 cut(s)	241
EcoT14I	CCWWGG	1 cut(s)	191
ErhI	CCWWGG	1 cut(s)	191
FaeI	CATG	4 cut(s)	213, 227, 331, 454
FatI	CATG	4 cut(s)	209, 223, 327, 450
Fnu4HI	GCNGC	3 cut(s)	8, 200, 390
Fsp4HI	GCNGC	3 cut(s)	8, 200, 390
FspBI	CTAG	1 cut(s)	162
FspI	TGCGCA	1 cut(s)	169
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	3 cut(s)	8, 200, 390
GsuI	CTGGAG	1 cut(s)	249
HaeIII	GGCC	1 cut(s)	128
HapII	CCGG	1 cut(s)	486
HhaI	GCGC	1 cut(s)	170
Hin1II	CATG	4 cut(s)	213, 227, 331, 454
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HinfI	GANTC	3 cut(s)	56, 62, 259
HpaII	CCGG	1 cut(s)	486
Hpy188I	TCNGA	1 cut(s)	61
Hpy188III	TCNNGA	2 cut(s)	162, 486
HpyAV	CCTTC	2 cut(s)	45, 113
HpyCH4III	ACNGT	1 cut(s)	525
HpyCH4IV	ACGT	2 cut(s)	141, 240
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 165
HpyF3I	CTNAG	2 cut(s)	257, 427
HpySE526I	ACGT	2 cut(s)	141, 240
Hsp92II	CATG	4 cut(s)	213, 227, 331, 454
HspAI	GCGC	1 cut(s)	168
Kpn2I	TCCGGA	1 cut(s)	485
Kzo9I	GATC	3 cut(s)	20, 204, 513
LmnI	GCTCC	1 cut(s)	556
LpnPI	CCDG	4 cut(s)	44, 213, 318, 499
Lsp1109I	GCAGC	2 cut(s)	19, 401
LweI	GCATC	1 cut(s)	155
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	2 cut(s)	141, 240
MaeIII	GTNAC	1 cut(s)	219
MalI	GATC	3 cut(s)	22, 206, 515
MboI	GATC	3 cut(s)	20, 204, 513
MboII	GAAGA	2 cut(s)	124, 485
MhlI	GDGCHC	1 cut(s)	161
MluCI	AATT	4 cut(s)	276, 293, 309, 438
MlyI	GAGTC	2 cut(s)	71, 268
MnlI	CCTC	2 cut(s)	99, 467
MroI	TCCGGA	1 cut(s)	485
MroXI	GAANNNNTTC	1 cut(s)	55
MseI	TTAA	1 cut(s)	528
MslI	CAYNNNNRTG	2 cut(s)	193, 214
MspI	CCGG	1 cut(s)	486
Mva1269I	GAATGC	1 cut(s)	553
MwoI	GCNNNNNNNGC	2 cut(s)	16, 165
NdeII	GATC	3 cut(s)	20, 204, 513
NlaIII	CATG	4 cut(s)	213, 227, 331, 454
NsbI	TGCGCA	1 cut(s)	169
NspI	RCATGY	1 cut(s)	227
NspV	TTCGAA	1 cut(s)	307
OliI	CACNNNNGTG	1 cut(s)	193
PctI	GAATGC	1 cut(s)	553
PdmI	GAANNNNTTC	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	56
PkrI	GCNGC	3 cut(s)	9, 201, 391
PleI	GAGTC	2 cut(s)	70, 267
PmaCI	CACGTG	1 cut(s)	241
PmlI	CACGTG	1 cut(s)	241
PpsI	GAGTC	2 cut(s)	70, 267
Ppu21I	YACGTR	1 cut(s)	241
PspCI	CACGTG	1 cut(s)	241
PspPI	GGNCC	1 cut(s)	126
RseI	CAYNNNNRTG	2 cut(s)	193, 214
SaqAI	TTAA	1 cut(s)	528
SatI	GCNGC	3 cut(s)	8, 200, 390
Sau3AI	GATC	3 cut(s)	20, 204, 513
Sau96I	GGNCC	1 cut(s)	126
SchI	GAGTC	2 cut(s)	71, 268
SduI	GDGCHC	1 cut(s)	161
SetI	ASST	4 cut(s)	144, 197, 243, 361
SfaNI	GCATC	1 cut(s)	155
SfuI	TTCGAA	1 cut(s)	307
SmiMI	CAYNNNNRTG	2 cut(s)	193, 214
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	4 cut(s)	276, 293, 309, 438
SsiI	CCGC	1 cut(s)	199
SspMI	CTAG	1 cut(s)	162
StyI	CCWWGG	1 cut(s)	191
TaaI	ACNGT	1 cut(s)	525
TaiI	ACGT	2 cut(s)	144, 243
TaqI	TCGA	1 cut(s)	307
TasI	AATT	4 cut(s)	276, 293, 309, 438
TauI	GCSGC	1 cut(s)	202
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	1 cut(s)	528
Tru9I	TTAA	1 cut(s)	528
TseI	GCWGC	2 cut(s)	7, 389
TspDTI	ATGAA	3 cut(s)	171, 259, 400
TspGWI	ACGGA	1 cut(s)	60
XapI	RAATTY	3 cut(s)	276, 293, 438
XbaI	TCTAGA	1 cut(s)	161
XceI	RCATGY	1 cut(s)	227
XcmI	CCANNNNNNNNNTGG	1 cut(s)	528
XmnI	GAANNNNTTC	1 cut(s)	55
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.