Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002566

Physical Location & Seq

Genomic Coordinates Forward (+)

9053716 .. 9060887

Gene Structure 7172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1106000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTGGTTACATGCTGGAGTTTTCCATGTGCTTGCCAATATGCTGAGTCTTTTATTCATTGGAATTCGGCTTGAGCAAGAATTTGGATTTGTTTTGTATACTCTTGGCTTGGTTACTCCTTTTCGAGGGTTCAATCTAAACAACCATTGTTCCTGGTGTCATTATTTGAGCTGTGTCCCTACATCAAAATGGAATTGCAAGTCACAAAATATTTATTGTCTGATAATATGCTGTACTTTTCTGCGCATATTAACTTCCTCCTTAATATTTGATAGACAGAAGTGCTTGCTTATTAATATGATCATGGTTGCATTCAGTCGTTCTAGTTTGGCATGCCGTTTATCGAGCCAGATAGGGAATCAGCTGAACTTAACGTGCGTAAGCAATGGTAGAAATGGAACATATTCATTGTCAGATCCCAGCCCCTCCCGGACTCAGCAGCTATATGCTGAGCTTTGCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006928 GO:0008150 GO:0008283 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

155

Amino Acids

17.45

Weight (kDa)

8.84

Isoelectric Point (pI)

51.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	1 - 35	5.7e-08	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29050 AT2G29050
fragaria_vesca	FvH4_3g36420 FvH4_3g36420 FvH4_3g36420 FvH4_3g36420
malus_domestica	MD00G1013900.v1.1 MD00G1178600.v1.1 MD00G1178800.v1.1 MD03G1090500.v1.1 MD11G1100200.v1.1 MD11G1101200.v1.1 MD11G1101800.v1.1 MD11G1102100.v1.1 MD11G1104300.v1.1 MD11G1105000.v1.1 MD11G1106000.v1.1 MD11G1106300.v1.1 MD11G1106700.v1.1 MD11G1106900.v1.1 MD11G1107000.v1.1 MD11G1107900.v1.1 MD11G1261200.v1.1 MD15G1402100.v1.1
prunus_persica	Prupe.6G074600_v2.0.a1
pyrus_communis	pycom03g07200 pycom11g08440
rosa_chinensis	RchiOBHm_Chr5g0065311
rosa_laevigata	RLG00000035780 RLG00000035781 RLG00000035782
rosa_multiflora	Rmu_sc0009942.1_g000006 Rmu_sc0013827.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015870
rosa_rugosa	Rorug05G0371200
rosa_samantha	Rh5AG429000 Rh5BG444300 Rh5CG466500 Rh5DG456600
rosa_wichuraiana	Rw5G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	245
AccI	GTMKAC	1 cut(s)	98
AclWI	GGATC	1 cut(s)	410
AcsI	RAATTY	2 cut(s)	63, 80
AfaI	GTAC	1 cut(s)	235
AfiI	CCNNNNNNNGG	1 cut(s)	125
AgsI	TTSAA	1 cut(s)	133
AjnI	CCWGG	1 cut(s)	152
AluBI	AGCT	4 cut(s)	171, 364, 442, 454
AluI	AGCT	4 cut(s)	171, 364, 442, 454
AlwI	GGATC	1 cut(s)	410
ApeKI	GCWGC	1 cut(s)	439
ApoI	RAATTY	2 cut(s)	63, 80
AseI	ATTAAT	1 cut(s)	294
Asp700I	GAANNNNTTC	1 cut(s)	403
AspLEI	GCGC	1 cut(s)	246
AsuC2I	CCSGG	1 cut(s)	430
BbvI	GCAGC	1 cut(s)	451
BceAI	ACGGC	1 cut(s)	321
BciT130I	CCWGG	1 cut(s)	154
BclI	TGATCA	1 cut(s)	300
BcnI	CCSGG	1 cut(s)	430
BfaI	CTAG	1 cut(s)	324
BisI	GCNGC	1 cut(s)	440
BlpI	GCTNAGC	1 cut(s)	450
BlsI	GCNGC	1 cut(s)	441
Bme1390I	CCNGG	2 cut(s)	154, 430
BmrFI	CCNGG	2 cut(s)	154, 430
BpmI	CTGGAG	1 cut(s)	36
Bpu1102I	GCTNAGC	1 cut(s)	450
BpuEI	CTTGAG	1 cut(s)	92
BpuMI	CCSGG	1 cut(s)	430
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
Bse3DI	GCAATG	1 cut(s)	391
BseBI	CCWGG	1 cut(s)	154
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseMI	GCAATG	1 cut(s)	391
BseMII	CTCAG	3 cut(s)	35, 441, 449
BseXI	GCAGC	1 cut(s)	451
BseYI	CCCAGC	1 cut(s)	419
BsiSI	CCGG	1 cut(s)	430
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	1 cut(s)	125
BsmFI	GGGAC	1 cut(s)	161
BsmI	GAATGC	1 cut(s)	311
Bsp143I	GATC	2 cut(s)	300, 415
Bsp1720I	GCTNAGC	1 cut(s)	450
BspCNI	CTCAG	3 cut(s)	36, 442, 448
BspPI	GGATC	1 cut(s)	410
BsrDI	GCAATG	1 cut(s)	391
BssMI	GATC	2 cut(s)	300, 415
BssNAI	GTATAC	1 cut(s)	99
Bst1107I	GTATAC	1 cut(s)	99
Bst2UI	CCWGG	1 cut(s)	154
BstC8I	GCNNGC	3 cut(s)	33, 287, 334
BstDEI	CTNAG	3 cut(s)	44, 435, 450
BstENI	CCTNNNNNAGG	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	246
BstKTI	GATC	2 cut(s)	303, 418
BstMBI	GATC	2 cut(s)	300, 415
BstNI	CCWGG	1 cut(s)	154
BstNSI	RCATGY	2 cut(s)	14, 336
BstSCI	CCNGG	2 cut(s)	152, 428
BstV1I	GCAGC	1 cut(s)	451
BstX2I	RGATCY	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	415
BstZ17I	GTATAC	1 cut(s)	99
Cac8I	GCNNGC	3 cut(s)	33, 287, 334
CfoI	GCGC	1 cut(s)	246
Csp6I	GTAC	1 cut(s)	234
CviAII	CATG	4 cut(s)	11, 26, 304, 333
CviJI	RGCY	8 cut(s)	70, 108, 171, 348, 364, 423, 442, 454
CviKI_1	RGCY	8 cut(s)	70, 108, 171, 348, 364, 423, 442, 454
CviQI	GTAC	1 cut(s)	234
DdeI	CTNAG	3 cut(s)	44, 435, 450
DpnI	GATC	2 cut(s)	302, 417
DpnII	GATC	2 cut(s)	300, 415
EcoNI	CCTNNNNNAGG	1 cut(s)	123
EcoRI	GAATTC	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	152
FaeI	CATG	4 cut(s)	14, 29, 307, 336
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	4 cut(s)	10, 25, 303, 332
FbaI	TGATCA	1 cut(s)	300
FblI	GTMKAC	1 cut(s)	98
Fnu4HI	GCNGC	1 cut(s)	440
Fsp4HI	GCNGC	1 cut(s)	440
FspBI	CTAG	1 cut(s)	324
FspI	TGCGCA	1 cut(s)	245
GlaI	GCGC	1 cut(s)	245
GluI	GCNGC	1 cut(s)	440
GsaI	CCCAGC	1 cut(s)	423
GsuI	CTGGAG	1 cut(s)	36
HapII	CCGG	1 cut(s)	430
HhaI	GCGC	1 cut(s)	246
Hin1II	CATG	4 cut(s)	14, 29, 307, 336
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HinfI	GANTC	3 cut(s)	46, 358, 433
HpaII	CCGG	1 cut(s)	430
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	2 cut(s)	222, 415
Hpy8I	GTNNAC	1 cut(s)	99
HpyCH4IV	ACGT	1 cut(s)	374
HpyCH4V	TGCA	3 cut(s)	198, 311, 459
HpyF3I	CTNAG	3 cut(s)	44, 435, 450
HpySE526I	ACGT	1 cut(s)	374
Hsp92II	CATG	4 cut(s)	14, 29, 307, 336
HspAI	GCGC	1 cut(s)	244
Ksp22I	TGATCA	1 cut(s)	300
Kzo9I	GATC	2 cut(s)	300, 415
LpnPI	CCDG	5 cut(s)	139, 166, 362, 433, 443
Lsp1109I	GCAGC	1 cut(s)	451
MaeI	CTAG	1 cut(s)	324
MaeII	ACGT	1 cut(s)	374
MaeIII	GTNAC	3 cut(s)	6, 112, 201
MalI	GATC	2 cut(s)	302, 417
MboI	GATC	2 cut(s)	300, 415
MflI	RGATCY	1 cut(s)	415
MluCI	AATT	3 cut(s)	63, 80, 193
MlyI	GAGTC	2 cut(s)	55, 427
MnlI	CCTC	3 cut(s)	119, 268, 436
MroXI	GAANNNNTTC	1 cut(s)	403
MseI	TTAA	4 cut(s)	251, 263, 294, 371
MslI	CAYNNNNRTG	1 cut(s)	187
MspA1I	CMGCKG	1 cut(s)	364
MspI	CCGG	1 cut(s)	430
MspR9I	CCNGG	2 cut(s)	154, 430
Mva1269I	GAATGC	1 cut(s)	311
MvaI	CCWGG	1 cut(s)	154
NciI	CCSGG	1 cut(s)	430
NdeII	GATC	2 cut(s)	300, 415
NlaIII	CATG	4 cut(s)	14, 29, 307, 336
NmuCI	GTSAC	1 cut(s)	201
NsbI	TGCGCA	1 cut(s)	245
NspI	RCATGY	2 cut(s)	14, 336
PaeI	GCATGC	1 cut(s)	336
PctI	GAATGC	1 cut(s)	311
PdmI	GAANNNNTTC	1 cut(s)	403
PfeI	GAWTC	1 cut(s)	358
PfoI	TCCNGGA	1 cut(s)	428
PkrI	GCNGC	1 cut(s)	441
PleI	GAGTC	2 cut(s)	54, 427
PpsI	GAGTC	2 cut(s)	54, 427
PshBI	ATTAAT	1 cut(s)	294
Psp6I	CCWGG	1 cut(s)	152
PspFI	CCCAGC	1 cut(s)	419
PspGI	CCWGG	1 cut(s)	152
PsuI	RGATCY	1 cut(s)	415
PvuII	CAGCTG	1 cut(s)	364
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
RseI	CAYNNNNRTG	1 cut(s)	187
SaqAI	TTAA	4 cut(s)	251, 263, 294, 371
SatI	GCNGC	1 cut(s)	440
Sau3AI	GATC	2 cut(s)	300, 415
SchI	GAGTC	2 cut(s)	55, 427
ScrFI	CCNGG	2 cut(s)	154, 430
SetI	ASST	5 cut(s)	173, 366, 377, 444, 456
SmiMI	CAYNNNNRTG	1 cut(s)	187
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SphI	GCATGC	1 cut(s)	336
Sse9I	AATT	3 cut(s)	63, 80, 193
SspI	AATATT	2 cut(s)	211, 267
SspMI	CTAG	1 cut(s)	324
StyD4I	CCNGG	2 cut(s)	152, 428
TaiI	ACGT	1 cut(s)	377
TaqI	TCGA	2 cut(s)	124, 344
TasI	AATT	3 cut(s)	63, 80, 193
TatI	WGTACW	1 cut(s)	233
TfiI	GAWTC	1 cut(s)	358
Tru1I	TTAA	4 cut(s)	251, 263, 294, 371
Tru9I	TTAA	4 cut(s)	251, 263, 294, 371
TseFI	GTSAC	1 cut(s)	201
TseI	GCWGC	1 cut(s)	439
Tsp45I	GTSAC	1 cut(s)	201
TspDTI	ATGAA	2 cut(s)	46, 396
VspI	ATTAAT	1 cut(s)	294
XagI	CCTNNNNNAGG	1 cut(s)	123
XapI	RAATTY	2 cut(s)	63, 80
XceI	RCATGY	2 cut(s)	14, 336
XmiI	GTMKAC	1 cut(s)	98
XmnI	GAANNNNTTC	1 cut(s)	403
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.