Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002566

Physical Location & Seq

Genomic Coordinates Reverse (-)

9459558 .. 9461722

Gene Structure 2165 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1106900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCTTACTCTCCTTTTCATCATCATAATAAACTTAGCAGTGGGAATTCTACCACACGTGGACAACTTTGCTCAAGTTGGAGGATTTGTCTCCAGATTTCTTCTTGGATTTTGTTTTTGATCCGCCCCCTGTTTAAATGGCTTACCCATCGGAATGCTCCCCCTGGACGTGTTAGTACTCTAGTTAAATCTAAACACAATACGTATCAATATGTATTGTGGGTCCTCTCTTTGATACTATTGATTGTTGGGTATACTCTTTTTCAAGTGGTCAATCTAAACAATCACTGTTCCTGGTGTCATTATTTGAGCAGTGTCCCTACGTCAAAATGGAATTGCAAGTCACAAAATATTTATTGTTTGGCTTTGGTTTATGAGTACATGGAAAAAGGAAGCTTAGAGAGGTGGCTGCATCCACCGACTGATATTGAAGAAGCAAGAGAGGCACCCAAGAGTTTAAATCTTTTGCAAAGGCTCAGCATTTCCATAGATGTTGCTTGTTTTATATTAGTCGATTATCTTCATAATCACTCCGAAACACCGATAGTTCATTGTGATCTGAAACCAAGTACTGTTCTTTTGGACAACATGTCGACTGGACATGTTTCTGACTTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006928 GO:0008150 GO:0008283 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

207

Amino Acids

23.76

Weight (kDa)

8.41

Isoelectric Point (pI)

52.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	115 - 205	1.3e-06	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	121 - 205	9.2e-06	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29050 AT2G29050
fragaria_vesca	FvH4_3g36420 FvH4_3g36420 FvH4_3g36420 FvH4_3g36420
malus_domestica	MD00G1013900.v1.1 MD00G1178600.v1.1 MD00G1178800.v1.1 MD03G1090500.v1.1 MD11G1100200.v1.1 MD11G1101200.v1.1 MD11G1101800.v1.1 MD11G1102100.v1.1 MD11G1104300.v1.1 MD11G1105000.v1.1 MD11G1106000.v1.1 MD11G1106300.v1.1 MD11G1106700.v1.1 MD11G1106900.v1.1 MD11G1107000.v1.1 MD11G1107900.v1.1 MD11G1261200.v1.1 MD15G1402100.v1.1
prunus_persica	Prupe.6G074600_v2.0.a1
pyrus_communis	pycom03g07200 pycom11g08440
rosa_chinensis	RchiOBHm_Chr5g0065311
rosa_laevigata	RLG00000035780 RLG00000035781 RLG00000035782
rosa_multiflora	Rmu_sc0009942.1_g000006 Rmu_sc0013827.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015870
rosa_rugosa	Rorug05G0371200
rosa_samantha	Rh5AG429000 Rh5BG444300 Rh5CG466500 Rh5DG456600
rosa_wichuraiana	Rw5G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	445
AccI	GTMKAC	2 cut(s)	254, 593
AciI	CCGC	1 cut(s)	124
AclWI	GGATC	1 cut(s)	115
AcsI	RAATTY	1 cut(s)	46
AcvI	CACGTG	1 cut(s)	59
AfaI	GTAC	3 cut(s)	178, 380, 571
AflIII	ACRYGT	4 cut(s)	56, 169, 588, 601
AgsI	TTSAA	2 cut(s)	266, 431
AhdI	GACNNNNNGTC	1 cut(s)	589
AjiI	CACGTC	1 cut(s)	170
AjnI	CCWGG	2 cut(s)	163, 293
AluBI	AGCT	1 cut(s)	396
AluI	AGCT	1 cut(s)	396
Alw26I	GTCTC	1 cut(s)	95
AlwI	GGATC	1 cut(s)	115
ApeKI	GCWGC	1 cut(s)	409
ApoI	RAATTY	1 cut(s)	46
AspS9I	GGNCC	1 cut(s)	223
AvaII	GGWCC	1 cut(s)	223
BanI	GGYRCC	1 cut(s)	445
BbrPI	CACGTG	1 cut(s)	59
BbvI	GCAGC	1 cut(s)	396
BccI	CCATC	1 cut(s)	156
BciT130I	CCWGG	2 cut(s)	165, 295
BcoDI	GTCTC	1 cut(s)	95
BfaI	CTAG	1 cut(s)	182
BisI	GCNGC	1 cut(s)	410
BlpI	GCTNAGC	1 cut(s)	476
BlsI	GCNGC	1 cut(s)	411
BmcAI	AGTACT	2 cut(s)	178, 571
Bme1390I	CCNGG	2 cut(s)	165, 295
Bme18I	GGWCC	1 cut(s)	223
BmeRI	GACNNNNNGTC	1 cut(s)	589
BmgBI	CACGTC	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	223
BmiI	GGNNCC	2 cut(s)	224, 447
BmrFI	CCNGG	2 cut(s)	165, 295
BmsI	GCATC	1 cut(s)	421
BpmI	CTGGAG	1 cut(s)	77
Bpu1102I	GCTNAGC	1 cut(s)	476
BpuEI	CTTGAG	1 cut(s)	58
BsaAI	YACGTR	2 cut(s)	59, 204
BsaJI	CCNNGG	1 cut(s)	163
BsaXI	ACNNNNNCTCC	2 cut(s)	73, 103
Bse1I	ACTGG	1 cut(s)	601
BseBI	CCWGG	2 cut(s)	165, 295
BseDI	CCNNGG	1 cut(s)	163
BseGI	GGATG	1 cut(s)	412
BseMII	CTCAG	1 cut(s)	490
BseNI	ACTGG	1 cut(s)	601
BseXI	GCAGC	1 cut(s)	396
BshNI	GGYRCC	1 cut(s)	445
BslFI	GGGAC	1 cut(s)	302
BsmAI	GTCTC	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	302
BsmI	GAATGC	1 cut(s)	160
Bsp143I	GATC	2 cut(s)	120, 556
Bsp1720I	GCTNAGC	1 cut(s)	476
BspACI	CCGC	1 cut(s)	124
BspCNI	CTCAG	1 cut(s)	489
BspLI	GGNNCC	2 cut(s)	224, 447
BspPI	GGATC	1 cut(s)	115
BspT107I	GGYRCC	1 cut(s)	445
BsrI	ACTGG	1 cut(s)	601
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	2 cut(s)	120, 556
BssNAI	GTATAC	1 cut(s)	255
Bst1107I	GTATAC	1 cut(s)	255
Bst2UI	CCWGG	2 cut(s)	165, 295
Bst4CI	ACNGT	2 cut(s)	290, 574
BstBAI	YACGTR	2 cut(s)	59, 204
BstDEI	CTNAG	3 cut(s)	35, 397, 476
BstF5I	GGATG	1 cut(s)	412
BstKTI	GATC	2 cut(s)	123, 559
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	2 cut(s)	120, 556
BstMWI	GCNNNNNNNGC	1 cut(s)	443
BstNI	CCWGG	2 cut(s)	165, 295
BstNSI	RCATGY	2 cut(s)	592, 605
BstSCI	CCNGG	2 cut(s)	163, 293
BstSNI	TACGTA	1 cut(s)	204
BstV1I	GCAGC	1 cut(s)	396
BstZ17I	GTATAC	1 cut(s)	255
BtrI	CACGTC	1 cut(s)	170
BtsCI	GGATG	1 cut(s)	412
BtsI	GCAGTG	2 cut(s)	46, 319
BtsIMutI	CAGTG	3 cut(s)	46, 286, 319
Cfr13I	GGNCC	1 cut(s)	223
Csp6I	GTAC	3 cut(s)	177, 379, 570
CviAII	CATG	3 cut(s)	382, 589, 602
CviJI	RGCY	6 cut(s)	5, 142, 365, 396, 409, 475
CviKI_1	RGCY	6 cut(s)	5, 142, 365, 396, 409, 475
CviQI	GTAC	3 cut(s)	177, 379, 570
DdeI	CTNAG	3 cut(s)	35, 397, 476
DpnI	GATC	2 cut(s)	122, 558
DpnII	GATC	2 cut(s)	120, 556
DraI	TTTAAA	2 cut(s)	136, 459
DriI	GACNNNNNGTC	1 cut(s)	589
Eam1105I	GACNNNNNGTC	1 cut(s)	589
EciI	GGCGGA	1 cut(s)	113
Eco105I	TACGTA	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	223
Eco72I	CACGTG	1 cut(s)	59
EcoO109I	RGGNCCY	1 cut(s)	223
EcoRI	GAATTC	1 cut(s)	46
EcoRII	CCWGG	2 cut(s)	163, 293
FaeI	CATG	3 cut(s)	385, 592, 605
FaqI	GGGAC	1 cut(s)	302
FatI	CATG	3 cut(s)	381, 588, 601
FblI	GTMKAC	2 cut(s)	254, 593
Fnu4HI	GCNGC	1 cut(s)	410
FokI	GGATG	1 cut(s)	399
Fsp4HI	GCNGC	1 cut(s)	410
FspBI	CTAG	1 cut(s)	182
GluI	GCNGC	1 cut(s)	410
GsuI	CTGGAG	1 cut(s)	77
Hin1II	CATG	3 cut(s)	385, 592, 605
HincII	GTYRAC	1 cut(s)	594
HindII	GTYRAC	1 cut(s)	594
HindIII	AAGCTT	1 cut(s)	394
Hpy166II	GTNNAC	3 cut(s)	62, 255, 594
Hpy188I	TCNGA	4 cut(s)	153, 535, 561, 610
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	3 cut(s)	62, 255, 594
HpyCH4III	ACNGT	2 cut(s)	290, 574
HpyCH4IV	ACGT	4 cut(s)	58, 169, 203, 323
HpyCH4V	TGCA	3 cut(s)	339, 412, 469
HpyF10VI	GCNNNNNNNGC	1 cut(s)	443
HpyF3I	CTNAG	3 cut(s)	35, 397, 476
HpySE526I	ACGT	4 cut(s)	58, 169, 203, 323
Hsp92II	CATG	3 cut(s)	385, 592, 605
Kzo9I	GATC	2 cut(s)	120, 556
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	7 cut(s)	107, 143, 150, 177, 280, 307, 582
Lsp1109I	GCAGC	1 cut(s)	396
LweI	GCATC	1 cut(s)	421
MaeI	CTAG	1 cut(s)	182
MaeII	ACGT	4 cut(s)	58, 169, 203, 323
MaeIII	GTNAC	1 cut(s)	342
MalI	GATC	2 cut(s)	122, 558
MboI	GATC	2 cut(s)	120, 556
MboII	GAAGA	3 cut(s)	93, 443, 512
MluCI	AATT	2 cut(s)	46, 334
MmeI	TCCRAC	1 cut(s)	59
MnlI	CCTC	4 cut(s)	75, 236, 396, 436
MseI	TTAA	3 cut(s)	135, 186, 458
MslI	CAYNNNNRTG	1 cut(s)	153
MspR9I	CCNGG	2 cut(s)	165, 295
Mva1269I	GAATGC	1 cut(s)	160
MvaI	CCWGG	2 cut(s)	165, 295
MwoI	GCNNNNNNNGC	1 cut(s)	443
NdeII	GATC	2 cut(s)	120, 556
NlaIII	CATG	3 cut(s)	385, 592, 605
NlaIV	GGNNCC	2 cut(s)	224, 447
NmuCI	GTSAC	1 cut(s)	342
NspI	RCATGY	2 cut(s)	592, 605
PciI	ACATGT	2 cut(s)	588, 601
PctI	GAATGC	1 cut(s)	160
PkrI	GCNGC	1 cut(s)	411
PmaCI	CACGTG	1 cut(s)	59
PmlI	CACGTG	1 cut(s)	59
Ppu21I	YACGTR	2 cut(s)	59, 204
PpuMI	RGGWCCY	1 cut(s)	223
PscI	ACATGT	2 cut(s)	588, 601
Psp5II	RGGWCCY	1 cut(s)	223
Psp6I	CCWGG	2 cut(s)	163, 293
PspCI	CACGTG	1 cut(s)	59
PspGI	CCWGG	2 cut(s)	163, 293
PspN4I	GGNNCC	2 cut(s)	224, 447
PspPI	GGNCC	1 cut(s)	223
PspPPI	RGGWCCY	1 cut(s)	223
RsaI	GTAC	3 cut(s)	178, 380, 571
RsaNI	GTAC	3 cut(s)	177, 379, 570
RseI	CAYNNNNRTG	1 cut(s)	153
SalI	GTCGAC	1 cut(s)	592
SaqAI	TTAA	3 cut(s)	135, 186, 458
SatI	GCNGC	1 cut(s)	410
Sau3AI	GATC	2 cut(s)	120, 556
Sau96I	GGNCC	1 cut(s)	223
ScaI	AGTACT	2 cut(s)	178, 571
ScrFI	CCNGG	2 cut(s)	165, 295
SetI	ASST	6 cut(s)	61, 172, 206, 326, 398, 407
SfaNI	GCATC	1 cut(s)	421
SinI	GGWCC	1 cut(s)	223
SmiMI	CAYNNNNRTG	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	73
SmoI	CTYRAG	1 cut(s)	73
SnaBI	TACGTA	1 cut(s)	204
Sse9I	AATT	2 cut(s)	46, 334
SsiI	CCGC	1 cut(s)	124
SspI	AATATT	1 cut(s)	352
SspMI	CTAG	1 cut(s)	182
StyD4I	CCNGG	2 cut(s)	163, 293
TaaI	ACNGT	2 cut(s)	290, 574
TaiI	ACGT	4 cut(s)	61, 172, 206, 326
TaqI	TCGA	2 cut(s)	513, 593
TasI	AATT	2 cut(s)	46, 334
TatI	WGTACW	3 cut(s)	176, 378, 569
Tru1I	TTAA	3 cut(s)	135, 186, 458
Tru9I	TTAA	3 cut(s)	135, 186, 458
TscAI	CASTG	3 cut(s)	46, 293, 319
TseFI	GTSAC	1 cut(s)	342
TseI	GCWGC	1 cut(s)	409
Tsp45I	GTSAC	1 cut(s)	342
TspDTI	ATGAA	3 cut(s)	8, 512, 539
TspRI	CASTG	3 cut(s)	46, 293, 319
VpaK11BI	GGWCC	1 cut(s)	223
XapI	RAATTY	1 cut(s)	46
XceI	RCATGY	2 cut(s)	592, 605
XmiI	GTMKAC	2 cut(s)	254, 593
XspI	CTAG	1 cut(s)	182
ZrmI	AGTACT	2 cut(s)	178, 571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.