Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002566

Physical Location & Seq

Genomic Coordinates Forward (+)

8606173 .. 8607535

Gene Structure 1363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1102100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGGTGCTCTAGACGCGCAGAGAGTGGTGGTTCATCAACACCAGGGATGGCGGCTGATCTCATGTATGTGGTTACATGCTGGAGTTTTCCATGTGCTTGCCAATATGCTGAGTCTTGTATTCATTGGAATTCGGCTTGAGCAAGAATTTGGATTTGTTCGAATTGGTTTCCTATATCTCATGTCTGATTTTGGTGGGAGTTTGCTTTCAGCTCTTTTTATTCAATATGGTATTTCTTTAGCAGCATTGCTTACTCTCCTTTTCATCATCATAATAAACTTAGCAGTGGGAATTCTGCCACACGTGGACAACTTTGCTCATATTGGAGGATTTGTCTCTGGATTTCTTCCTGGATTTTTGTTTTTGATCCGCCCCCAGTTTAAATGGCTTACCCAACGGAATGCTCCCCTGGATGTGTTACTATTCCAGTTAAATCTAAACACAAGATGTATCAATATGTGTTGGAAGAATGCATGCAAGTCATATCTTGTGTTAAAATGCATGCATGAAATAAACATGTTGGATGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006928 GO:0008150 GO:0008283 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

177

Amino Acids

19.95

Weight (kDa)

8.35

Isoelectric Point (pI)

33.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	14 - 77	1e-18	Rhomboid domain
Rhomboid	PF01694	80 - 122	1.6e-06	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29050 AT2G29050
fragaria_vesca	FvH4_3g36420 FvH4_3g36420 FvH4_3g36420 FvH4_3g36420
malus_domestica	MD00G1013900.v1.1 MD00G1178600.v1.1 MD00G1178800.v1.1 MD03G1090500.v1.1 MD11G1100200.v1.1 MD11G1101200.v1.1 MD11G1101800.v1.1 MD11G1102100.v1.1 MD11G1104300.v1.1 MD11G1105000.v1.1 MD11G1106000.v1.1 MD11G1106300.v1.1 MD11G1106700.v1.1 MD11G1106900.v1.1 MD11G1107000.v1.1 MD11G1107900.v1.1 MD11G1261200.v1.1 MD15G1402100.v1.1
prunus_persica	Prupe.6G074600_v2.0.a1
pyrus_communis	pycom03g07200 pycom11g08440
rosa_chinensis	RchiOBHm_Chr5g0065311
rosa_laevigata	RLG00000035780 RLG00000035781 RLG00000035782
rosa_multiflora	Rmu_sc0009942.1_g000006 Rmu_sc0013827.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015870
rosa_rugosa	Rorug05G0371200
rosa_samantha	Rh5AG429000 Rh5BG444300 Rh5CG466500 Rh5DG456600
rosa_wichuraiana	Rw5G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	17
AciI	CCGC	2 cut(s)	52, 370
AclWI	GGATC	1 cut(s)	361
AcsI	RAATTY	3 cut(s)	129, 146, 291
AcvI	CACGTG	1 cut(s)	304
AflIII	ACRYGT	2 cut(s)	301, 516
AgsI	TTSAA	1 cut(s)	224
AjnI	CCWGG	3 cut(s)	42, 349, 408
AluBI	AGCT	1 cut(s)	212
AluI	AGCT	1 cut(s)	212
Alw21I	GWGCWC	1 cut(s)	10
Alw26I	GTCTC	1 cut(s)	340
AlwI	GGATC	1 cut(s)	361
ApeKI	GCWGC	1 cut(s)	242
ApoI	RAATTY	3 cut(s)	129, 146, 291
AspLEI	GCGC	1 cut(s)	19
AsuII	TTCGAA	1 cut(s)	160
BbrPI	CACGTG	1 cut(s)	304
Bbv12I	GWGCWC	1 cut(s)	10
BbvI	GCAGC	1 cut(s)	254
BccI	CCATC	1 cut(s)	42
BciT130I	CCWGG	3 cut(s)	44, 351, 410
BcoDI	GTCTC	1 cut(s)	340
BfaI	CTAG	2 cut(s)	11, 529
BisI	GCNGC	2 cut(s)	53, 243
BlsI	GCNGC	2 cut(s)	54, 244
Bme1390I	CCNGG	3 cut(s)	44, 351, 410
BmrFI	CCNGG	3 cut(s)	44, 351, 410
BmrI	ACTGGG	1 cut(s)	370
BmuI	ACTGGG	1 cut(s)	370
BpmI	CTGGAG	1 cut(s)	102
Bpu14I	TTCGAA	1 cut(s)	160
BpuEI	CTTGAG	1 cut(s)	158
BsaAI	YACGTR	1 cut(s)	304
BsaJI	CCNNGG	2 cut(s)	43, 408
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bse1I	ACTGG	2 cut(s)	376, 427
Bse3DI	GCAATG	1 cut(s)	245
BseBI	CCWGG	3 cut(s)	44, 351, 410
BseDI	CCNNGG	2 cut(s)	43, 408
BseGI	GGATG	3 cut(s)	53, 418, 529
BseMI	GCAATG	1 cut(s)	245
BseMII	CTCAG	1 cut(s)	101
BseNI	ACTGG	2 cut(s)	376, 427
BseXI	GCAGC	1 cut(s)	254
Bsh1236I	CGCG	1 cut(s)	17
BsiHKAI	GWGCWC	1 cut(s)	10
BsmAI	GTCTC	1 cut(s)	340
BsmI	GAATGC	2 cut(s)	406, 475
Bsp119I	TTCGAA	1 cut(s)	160
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp143I	GATC	2 cut(s)	57, 366
BspACI	CCGC	2 cut(s)	52, 370
BspCNI	CTCAG	1 cut(s)	102
BspFNI	CGCG	1 cut(s)	17
BspPI	GGATC	1 cut(s)	361
BspT104I	TTCGAA	1 cut(s)	160
BsrDI	GCAATG	1 cut(s)	245
BsrI	ACTGG	2 cut(s)	376, 427
BssECI	CCNNGG	2 cut(s)	43, 408
BssMI	GATC	2 cut(s)	57, 366
Bst2UI	CCWGG	3 cut(s)	44, 351, 410
BstBAI	YACGTR	1 cut(s)	304
BstBI	TTCGAA	1 cut(s)	160
BstC8I	GCNNGC	3 cut(s)	99, 475, 503
BstDEI	CTNAG	2 cut(s)	110, 280
BstF5I	GGATG	3 cut(s)	53, 418, 529
BstFNI	CGCG	1 cut(s)	17
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	2 cut(s)	60, 369
BstMAI	GTCTC	1 cut(s)	340
BstMBI	GATC	2 cut(s)	57, 366
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstNI	CCWGG	3 cut(s)	44, 351, 410
BstNSI	RCATGY	4 cut(s)	80, 477, 505, 520
BstSCI	CCNGG	3 cut(s)	42, 349, 408
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	1 cut(s)	254
BtsCI	GGATG	3 cut(s)	53, 418, 529
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	1 cut(s)	291
Cac8I	GCNNGC	3 cut(s)	99, 475, 503
CfoI	GCGC	1 cut(s)	19
CseI	GACGC	1 cut(s)	23
CviAII	CATG	8 cut(s)	63, 77, 92, 181, 474, 502, 506, 517
CviJI	RGCY	4 cut(s)	55, 136, 212, 388
CviKI_1	RGCY	4 cut(s)	55, 136, 212, 388
DdeI	CTNAG	2 cut(s)	110, 280
DpnI	GATC	2 cut(s)	59, 368
DpnII	GATC	2 cut(s)	57, 366
DraI	TTTAAA	1 cut(s)	382
EciI	GGCGGA	1 cut(s)	359
Eco72I	CACGTG	1 cut(s)	304
EcoRI	GAATTC	2 cut(s)	129, 291
EcoRII	CCWGG	3 cut(s)	42, 349, 408
EcoT22I	ATGCAT	3 cut(s)	475, 503, 507
FaeI	CATG	8 cut(s)	66, 80, 95, 184, 477, 505, 509, 520
FatI	CATG	8 cut(s)	62, 76, 91, 180, 473, 501, 505, 516
Fnu4HI	GCNGC	2 cut(s)	53, 243
FokI	GGATG	2 cut(s)	60, 425
Fsp4HI	GCNGC	2 cut(s)	53, 243
FspBI	CTAG	2 cut(s)	11, 529
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	2 cut(s)	53, 243
GsuI	CTGGAG	1 cut(s)	102
HgaI	GACGC	1 cut(s)	23
HhaI	GCGC	1 cut(s)	19
Hin1II	CATG	8 cut(s)	66, 80, 95, 184, 477, 505, 509, 520
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HinfI	GANTC	1 cut(s)	112
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	2 cut(s)	11, 339
Hpy8I	GTNNAC	1 cut(s)	307
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	4 cut(s)	473, 477, 501, 505
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	2 cut(s)	110, 280
HpySE526I	ACGT	1 cut(s)	303
Hsp92II	CATG	8 cut(s)	66, 80, 95, 184, 477, 505, 509, 520
HspAI	GCGC	1 cut(s)	17
Kzo9I	GATC	2 cut(s)	57, 366
LmnI	GCTCC	1 cut(s)	409
Lsp1109I	GCAGC	1 cut(s)	254
MaeI	CTAG	2 cut(s)	11, 529
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	2 cut(s)	72, 417
MalI	GATC	2 cut(s)	59, 368
MboI	GATC	2 cut(s)	57, 366
MboII	GAAGA	2 cut(s)	338, 478
MhlI	GDGCHC	1 cut(s)	10
MluCI	AATT	4 cut(s)	129, 146, 162, 291
MlyI	GAGTC	1 cut(s)	121
MmeI	TCCRAC	2 cut(s)	443, 501
MnlI	CCTC	1 cut(s)	320
Mph1103I	ATGCAT	3 cut(s)	475, 503, 507
MseI	TTAA	3 cut(s)	381, 431, 494
MslI	CAYNNNNRTG	1 cut(s)	67
MspR9I	CCNGG	3 cut(s)	44, 351, 410
Mva1269I	GAATGC	2 cut(s)	406, 475
MvaI	CCWGG	3 cut(s)	44, 351, 410
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeII	GATC	2 cut(s)	57, 366
NlaIII	CATG	8 cut(s)	66, 80, 95, 184, 477, 505, 509, 520
NsiI	ATGCAT	3 cut(s)	475, 503, 507
NspI	RCATGY	4 cut(s)	80, 477, 505, 520
NspV	TTCGAA	1 cut(s)	160
PaeI	GCATGC	2 cut(s)	477, 505
PciI	ACATGT	1 cut(s)	516
PctI	GAATGC	2 cut(s)	406, 475
PfoI	TCCNGGA	1 cut(s)	349
PkrI	GCNGC	2 cut(s)	54, 244
PleI	GAGTC	1 cut(s)	120
PmaCI	CACGTG	1 cut(s)	304
PmlI	CACGTG	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	120
Ppu21I	YACGTR	1 cut(s)	304
PscI	ACATGT	1 cut(s)	516
Psp6I	CCWGG	3 cut(s)	42, 349, 408
PspCI	CACGTG	1 cut(s)	304
PspGI	CCWGG	3 cut(s)	42, 349, 408
RseI	CAYNNNNRTG	1 cut(s)	67
SaqAI	TTAA	3 cut(s)	381, 431, 494
SatI	GCNGC	2 cut(s)	53, 243
Sau3AI	GATC	2 cut(s)	57, 366
SchI	GAGTC	1 cut(s)	121
ScrFI	CCNGG	3 cut(s)	44, 351, 410
SduI	GDGCHC	1 cut(s)	10
SetI	ASST	2 cut(s)	214, 306
SfuI	TTCGAA	1 cut(s)	160
SmiMI	CAYNNNNRTG	1 cut(s)	67
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
SphI	GCATGC	2 cut(s)	477, 505
Sse9I	AATT	4 cut(s)	129, 146, 162, 291
SsiI	CCGC	2 cut(s)	52, 370
SspMI	CTAG	2 cut(s)	11, 529
StyD4I	CCNGG	3 cut(s)	42, 349, 408
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	1 cut(s)	160
TasI	AATT	4 cut(s)	129, 146, 162, 291
TauI	GCSGC	1 cut(s)	55
Tru1I	TTAA	3 cut(s)	381, 431, 494
Tru9I	TTAA	3 cut(s)	381, 431, 494
TscAI	CASTG	1 cut(s)	291
TseI	GCWGC	1 cut(s)	242
TspDTI	ATGAA	4 cut(s)	23, 112, 253, 522
TspGWI	ACGGA	1 cut(s)	412
TspRI	CASTG	1 cut(s)	291
XapI	RAATTY	3 cut(s)	129, 146, 291
XbaI	TCTAGA	1 cut(s)	10
XceI	RCATGY	4 cut(s)	80, 477, 505, 520
XspI	CTAG	2 cut(s)	11, 529
Zsp2I	ATGCAT	3 cut(s)	475, 503, 507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.