Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002566

Physical Location & Seq

Genomic Coordinates Forward (+)

8515102 .. 8518355

Gene Structure 3254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1101800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGAAAATCTCGTCGCATCTCCTTTCAACCCTTCAAGGAAAACCCACTTCTTGGGCCGTCTTCAACCACTTTTGGATTGAAGTTTGTGTTTTGGGATTTGTTGGGTGCTCGCATATGGAAATTTGGAAATTTTTAGTTGTGGATTGTGGGGAATTGACGCAGTGGCGGTCCTATTTCATGTTAGAAAAGATGGGTGCTCTAGACGCGCATTTGCTTTCAGCTCTTTTTATTCAATATGGTATTTCTGTTGGTGCTTCTGATGCACTTTTTGGTTTACTAGGAAGCATGCTTTCAGAGCTCACATCAAATTGGACAATGTATGTAAATAATTTTAAATGGCTTACCCAACAGAATGCTCCCCCTGGACGTGTTACTACTCCAGTTAAATCTAAACACAAGACGTGTCAATATGTATTGTGGGTCCTCTCTTTGATACTATTGATTGTTGGGTATACTCTTGGCTTGGTTACTCATTTTCGAGGGGTCAATCTAAACAACCATTGTTCTTGGTGTCATTATTTGAGCTGTGTCTCTACATCAAAATGGAATTGCAAGTCACAAAATATTTATTGCCTGATAATATGCTGTACTTTTCTGCGCATATTAACTTCCTCCTTAATATTTGATAGACAGAAGTGCTTGCTTATTAATATGATCATGGTTGCATTCAGTCGTTCTAGTTTGGCATGCCGTTTATCGAGCCAGATAGGGAATCAGCTGAACTTAACGTGCGTAAGCAATGGTAGAAATGGAACATATTCATTGTCAGATCCTAGCCCCTCCCGGACTCAGCAACGATATGCTGAGCTTTGCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006928 GO:0008150 GO:0008283 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

273

Amino Acids

30.69

Weight (kDa)

8.97

Isoelectric Point (pI)

34.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29050 AT2G29050
fragaria_vesca	FvH4_3g36420 FvH4_3g36420 FvH4_3g36420 FvH4_3g36420
malus_domestica	MD00G1013900.v1.1 MD00G1178600.v1.1 MD00G1178800.v1.1 MD03G1090500.v1.1 MD11G1100200.v1.1 MD11G1101200.v1.1 MD11G1101800.v1.1 MD11G1102100.v1.1 MD11G1104300.v1.1 MD11G1105000.v1.1 MD11G1106000.v1.1 MD11G1106300.v1.1 MD11G1106700.v1.1 MD11G1106900.v1.1 MD11G1107000.v1.1 MD11G1107900.v1.1 MD11G1261200.v1.1 MD15G1402100.v1.1
prunus_persica	Prupe.6G074600_v2.0.a1
pyrus_communis	pycom03g07200 pycom11g08440
rosa_chinensis	RchiOBHm_Chr5g0065311
rosa_laevigata	RLG00000035780 RLG00000035781 RLG00000035782
rosa_multiflora	Rmu_sc0009942.1_g000006 Rmu_sc0013827.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015870
rosa_rugosa	Rorug05G0371200
rosa_samantha	Rh5AG429000 Rh5BG444300 Rh5CG466500 Rh5DG456600
rosa_wichuraiana	Rw5G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	599
AccB7I	CCANNNNNTGG	1 cut(s)	51
AccI	GTMKAC	1 cut(s)	452
AccII	CGCG	1 cut(s)	206
AciI	CCGC	1 cut(s)	166
AclWI	GGATC	1 cut(s)	764
AcsI	RAATTY	2 cut(s)	120, 128
AfaI	GTAC	1 cut(s)	589
AfiI	CCNNNNNNNGG	1 cut(s)	51
AflIII	ACRYGT	2 cut(s)	367, 401
AgsI	TTSAA	5 cut(s)	27, 35, 64, 80, 233
AjiI	CACGTC	2 cut(s)	368, 402
AjnI	CCWGG	1 cut(s)	361
AluBI	AGCT	5 cut(s)	221, 298, 525, 718, 808
AluI	AGCT	5 cut(s)	221, 298, 525, 718, 808
Alw21I	GWGCWC	3 cut(s)	110, 199, 300
Alw26I	GTCTC	1 cut(s)	535
AlwI	GGATC	1 cut(s)	764
AoxI	GGCC	1 cut(s)	54
ApoI	RAATTY	2 cut(s)	120, 128
AseI	ATTAAT	1 cut(s)	648
Asp700I	GAANNNNTTC	1 cut(s)	757
AspLEI	GCGC	2 cut(s)	208, 600
AspS9I	GGNCC	3 cut(s)	54, 168, 421
AsuC2I	CCSGG	1 cut(s)	784
AvaII	GGWCC	2 cut(s)	168, 421
BanII	GRGCYC	1 cut(s)	300
BbsI	GAAGAC	1 cut(s)	52
Bbv12I	GWGCWC	3 cut(s)	110, 199, 300
BccI	CCATC	1 cut(s)	184
BceAI	ACGGC	2 cut(s)	41, 675
BciT130I	CCWGG	1 cut(s)	363
BclI	TGATCA	1 cut(s)	654
BcnI	CCSGG	1 cut(s)	784
BcoDI	GTCTC	1 cut(s)	535
BfaI	CTAG	4 cut(s)	200, 278, 678, 774
BlpI	GCTNAGC	1 cut(s)	804
Bme1390I	CCNGG	2 cut(s)	363, 784
Bme18I	GGWCC	2 cut(s)	168, 421
BmgBI	CACGTC	2 cut(s)	368, 402
BmgT120I	GGNCC	3 cut(s)	54, 168, 421
BmiI	GGNNCC	1 cut(s)	422
BmrFI	CCNGG	2 cut(s)	363, 784
BmsI	GCATC	2 cut(s)	25, 250
BpiI	GAAGAC	1 cut(s)	52
BpmI	CTGGAG	1 cut(s)	363
Bpu1102I	GCTNAGC	1 cut(s)	804
BpuMI	CCSGG	1 cut(s)	784
BsaJI	CCNNGG	1 cut(s)	361
Bsc4I	CCNNNNNNNGG	1 cut(s)	51
Bse1I	ACTGG	1 cut(s)	380
Bse3DI	GCAATG	1 cut(s)	745
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	1 cut(s)	361
BseLI	CCNNNNNNNGG	1 cut(s)	51
BseMI	GCAATG	1 cut(s)	745
BseMII	CTCAG	2 cut(s)	795, 803
BseNI	ACTGG	1 cut(s)	380
Bsh1236I	CGCG	1 cut(s)	206
BshFI	GGCC	1 cut(s)	56
BsiHKAI	GWGCWC	3 cut(s)	110, 199, 300
BsiSI	CCGG	1 cut(s)	784
BslI	CCNNNNNNNGG	1 cut(s)	51
BsmAI	GTCTC	1 cut(s)	535
BsmI	GAATGC	2 cut(s)	358, 665
BsnI	GGCC	1 cut(s)	56
Bsp1286I	GDGCHC	3 cut(s)	110, 199, 300
Bsp143I	GATC	2 cut(s)	654, 769
Bsp1720I	GCTNAGC	1 cut(s)	804
BspACI	CCGC	1 cut(s)	166
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	2 cut(s)	796, 802
BspFNI	CGCG	1 cut(s)	206
BspLI	GGNNCC	1 cut(s)	422
BspPI	GGATC	1 cut(s)	764
BsrDI	GCAATG	1 cut(s)	745
BsrI	ACTGG	1 cut(s)	380
BssECI	CCNNGG	1 cut(s)	361
BssMI	GATC	2 cut(s)	654, 769
BssNAI	GTATAC	1 cut(s)	453
Bst1107I	GTATAC	1 cut(s)	453
Bst2UI	CCWGG	1 cut(s)	363
BstC8I	GCNNGC	4 cut(s)	110, 287, 641, 688
BstDEI	CTNAG	2 cut(s)	789, 804
BstFNI	CGCG	1 cut(s)	206
BstHHI	GCGC	2 cut(s)	208, 600
BstKTI	GATC	2 cut(s)	657, 772
BstMAI	GTCTC	1 cut(s)	535
BstMBI	GATC	2 cut(s)	654, 769
BstMWI	GCNNNNNNNGC	3 cut(s)	203, 260, 295
BstNI	CCWGG	1 cut(s)	363
BstNSI	RCATGY	2 cut(s)	289, 690
BstSCI	CCNGG	2 cut(s)	361, 782
BstUI	CGCG	1 cut(s)	206
BstV2I	GAAGAC	1 cut(s)	52
BstX2I	RGATCY	1 cut(s)	769
BstYI	RGATCY	1 cut(s)	769
BstZ17I	GTATAC	1 cut(s)	453
BsuRI	GGCC	1 cut(s)	56
BtrI	CACGTC	2 cut(s)	368, 402
BtsI	GCAGTG	1 cut(s)	167
BtsIMutI	CAGTG	1 cut(s)	167
Cac8I	GCNNGC	4 cut(s)	110, 287, 641, 688
CfoI	GCGC	2 cut(s)	208, 600
Cfr13I	GGNCC	3 cut(s)	54, 168, 421
CseI	GACGC	2 cut(s)	166, 212
Csp6I	GTAC	1 cut(s)	588
CviAII	CATG	4 cut(s)	178, 286, 658, 687
CviQI	GTAC	1 cut(s)	588
DdeI	CTNAG	2 cut(s)	789, 804
DpnI	GATC	2 cut(s)	656, 771
DpnII	GATC	2 cut(s)	654, 769
DraI	TTTAAA	1 cut(s)	334
Ecl136II	GAGCTC	1 cut(s)	298
Eco24I	GRGCYC	1 cut(s)	300
Eco47I	GGWCC	2 cut(s)	168, 421
Eco53kI	GAGCTC	1 cut(s)	298
EcoICRI	GAGCTC	1 cut(s)	298
EcoO109I	RGGNCCY	1 cut(s)	421
EcoRII	CCWGG	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	300
FaeI	CATG	4 cut(s)	181, 289, 661, 690
FatI	CATG	4 cut(s)	177, 285, 657, 686
FauNDI	CATATG	1 cut(s)	114
FbaI	TGATCA	1 cut(s)	654
FblI	GTMKAC	1 cut(s)	452
FriOI	GRGCYC	1 cut(s)	300
FspBI	CTAG	4 cut(s)	200, 278, 678, 774
FspI	TGCGCA	1 cut(s)	599
GlaI	GCGC	2 cut(s)	207, 599
GsuI	CTGGAG	1 cut(s)	363
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	1 cut(s)	784
HgaI	GACGC	2 cut(s)	166, 212
HhaI	GCGC	2 cut(s)	208, 600
Hin1II	CATG	4 cut(s)	181, 289, 661, 690
Hin6I	GCGC	2 cut(s)	206, 598
HinP1I	GCGC	2 cut(s)	206, 598
HinfI	GANTC	2 cut(s)	712, 787
HpaII	CCGG	1 cut(s)	784
Hpy166II	GTNNAC	2 cut(s)	275, 453
Hpy188I	TCNGA	3 cut(s)	259, 295, 769
Hpy188III	TCNNGA	1 cut(s)	200
Hpy8I	GTNNAC	2 cut(s)	275, 453
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	1 cut(s)	41
HpyCH4IV	ACGT	3 cut(s)	367, 401, 728
HpyCH4V	TGCA	4 cut(s)	263, 552, 665, 813
HpyF10VI	GCNNNNNNNGC	3 cut(s)	203, 260, 295
HpyF3I	CTNAG	2 cut(s)	789, 804
HpySE526I	ACGT	3 cut(s)	367, 401, 728
Hsp92II	CATG	4 cut(s)	181, 289, 661, 690
HspAI	GCGC	2 cut(s)	206, 598
Ksp22I	TGATCA	1 cut(s)	654
Kzo9I	GATC	2 cut(s)	654, 769
LmnI	GCTCC	1 cut(s)	361
LpnPI	CCDG	6 cut(s)	348, 375, 393, 587, 716, 797
LweI	GCATC	2 cut(s)	25, 250
MaeI	CTAG	4 cut(s)	200, 278, 678, 774
MaeII	ACGT	3 cut(s)	367, 401, 728
MaeIII	GTNAC	3 cut(s)	370, 466, 555
MalI	GATC	2 cut(s)	656, 771
MboI	GATC	2 cut(s)	654, 769
MboII	GAAGA	1 cut(s)	52
MflI	RGATCY	1 cut(s)	769
MhlI	GDGCHC	3 cut(s)	110, 199, 300
MluCI	AATT	6 cut(s)	120, 128, 152, 307, 328, 547
MlyI	GAGTC	1 cut(s)	781
MnlI	CCTC	4 cut(s)	434, 473, 622, 790
MroXI	GAANNNNTTC	1 cut(s)	757
MseI	TTAA	6 cut(s)	333, 384, 605, 617, 648, 725
MslI	CAYNNNNRTG	1 cut(s)	541
MspA1I	CMGCKG	1 cut(s)	718
MspI	CCGG	1 cut(s)	784
MspR9I	CCNGG	2 cut(s)	363, 784
Mva1269I	GAATGC	2 cut(s)	358, 665
MvaI	CCWGG	1 cut(s)	363
MvnI	CGCG	1 cut(s)	206
MwoI	GCNNNNNNNGC	3 cut(s)	203, 260, 295
NciI	CCSGG	1 cut(s)	784
NdeI	CATATG	1 cut(s)	114
NdeII	GATC	2 cut(s)	654, 769
NlaIII	CATG	4 cut(s)	181, 289, 661, 690
NlaIV	GGNNCC	1 cut(s)	422
NmuCI	GTSAC	1 cut(s)	555
NsbI	TGCGCA	1 cut(s)	599
NspI	RCATGY	2 cut(s)	289, 690
PaeI	GCATGC	2 cut(s)	289, 690
PctI	GAATGC	2 cut(s)	358, 665
PdmI	GAANNNNTTC	1 cut(s)	757
PfeI	GAWTC	1 cut(s)	712
PflMI	CCANNNNNTGG	1 cut(s)	51
PfoI	TCCNGGA	1 cut(s)	782
PleI	GAGTC	1 cut(s)	781
PpsI	GAGTC	1 cut(s)	781
PpuMI	RGGWCCY	1 cut(s)	421
PshBI	ATTAAT	1 cut(s)	648
Psp124BI	GAGCTC	1 cut(s)	300
Psp5II	RGGWCCY	1 cut(s)	421
Psp6I	CCWGG	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	1 cut(s)	422
PspPI	GGNCC	3 cut(s)	54, 168, 421
PspPPI	RGGWCCY	1 cut(s)	421
PsuI	RGATCY	1 cut(s)	769
PvuII	CAGCTG	1 cut(s)	718
RsaI	GTAC	1 cut(s)	589
RsaNI	GTAC	1 cut(s)	588
RseI	CAYNNNNRTG	1 cut(s)	541
SacI	GAGCTC	1 cut(s)	300
SaqAI	TTAA	6 cut(s)	333, 384, 605, 617, 648, 725
Sau3AI	GATC	2 cut(s)	654, 769
Sau96I	GGNCC	3 cut(s)	54, 168, 421
SchI	GAGTC	1 cut(s)	781
ScrFI	CCNGG	2 cut(s)	363, 784
SduI	GDGCHC	3 cut(s)	110, 199, 300
SetI	ASST	8 cut(s)	223, 300, 370, 404, 527, 720, 731, 810
SfaNI	GCATC	2 cut(s)	25, 250
SinI	GGWCC	2 cut(s)	168, 421
SmiMI	CAYNNNNRTG	1 cut(s)	541
SphI	GCATGC	2 cut(s)	289, 690
Sse9I	AATT	6 cut(s)	120, 128, 152, 307, 328, 547
SsiI	CCGC	1 cut(s)	166
SspI	AATATT	2 cut(s)	565, 621
SspMI	CTAG	4 cut(s)	200, 278, 678, 774
SstI	GAGCTC	1 cut(s)	300
StyD4I	CCNGG	2 cut(s)	361, 782
TaiI	ACGT	3 cut(s)	370, 404, 731
TaqI	TCGA	2 cut(s)	478, 698
TasI	AATT	6 cut(s)	120, 128, 152, 307, 328, 547
TatI	WGTACW	1 cut(s)	587
TfiI	GAWTC	1 cut(s)	712
Tru1I	TTAA	6 cut(s)	333, 384, 605, 617, 648, 725
Tru9I	TTAA	6 cut(s)	333, 384, 605, 617, 648, 725
TscAI	CASTG	1 cut(s)	167
TseFI	GTSAC	1 cut(s)	555
Tsp45I	GTSAC	1 cut(s)	555
TspDTI	ATGAA	3 cut(s)	17, 166, 750
TspRI	CASTG	1 cut(s)	167
Van91I	CCANNNNNTGG	1 cut(s)	51
VpaK11BI	GGWCC	2 cut(s)	168, 421
VspI	ATTAAT	1 cut(s)	648
XapI	RAATTY	2 cut(s)	120, 128
XbaI	TCTAGA	1 cut(s)	199
XceI	RCATGY	2 cut(s)	289, 690
XmiI	GTMKAC	1 cut(s)	452
XmnI	GAANNNNTTC	1 cut(s)	757
XspI	CTAG	4 cut(s)	200, 278, 678, 774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.