Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002566

Physical Location & Seq

Genomic Coordinates Forward (+)

8458010 .. 8459430

Gene Structure 1421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1101200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTCTGGTTTTGGAAGCATGCTTTCGGAGCTCATATCAAATTGGACAATGTATGTAAATAAGGTAAATAAAGTTTCTGTATACTCAATGATGCACCTCTTTATAGTATGTGCACGACCCATTGATCTTACAGTTTCAAATTTCGATCAGCAGTTAGCAGCATTGCTTACTCTCCTTTTCATCATCATAATAAACTTAGCAGTGGGAATTCTACCACACGTGGACAACTTTGCTCATATTGGAGGATTTGTCTCCGGATTTCTTCTTGGATTTTTGTTTTTGATCTGCCCCCAGTTTAAGTGGCCTACCCAACGGAATGCTCCGCCTGGACGTGTTAGTACTCCAGTTAAATCTAAACACAAGACGTATCAATATGTATTGTGGGTCCTCTCTTTGATACTATTGATTGTTGAGTATACTATTGGCCTGGTTACTCTTTTTCGAGGGGTCAATCTAAACAACCATTGTTCCTGGTGTCATTATTTGAGCTGTGTCCCTACATCAAAATGGAATTGCAAGTCACAAAACATTTGTTGTCTGATAATATGCTGTACTTTTCTGCGCATATTAACTTCCGCCTTAATATTTGATAGACAGAAATGCTTGCTTATTAATATGATCATGGTTGCATTCAGTCGTTCTAGTTTGTCGAGCCAGATATGGAATCAGTTGAACTTAACGTGCGTAAGCAATGGCAGAAATGGAACATATTCATTGTCAGATCCCAGCCCCTGCCGGACTCAGCAGCTATGTGCTGAGCTTTGCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006928 GO:0008150 GO:0008283 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

257

Amino Acids

28.81

Weight (kDa)

9.0

Isoelectric Point (pI)

41.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	46 - 94	3.5e-07	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29050 AT2G29050
fragaria_vesca	FvH4_3g36420 FvH4_3g36420 FvH4_3g36420 FvH4_3g36420
malus_domestica	MD00G1013900.v1.1 MD00G1178600.v1.1 MD00G1178800.v1.1 MD03G1090500.v1.1 MD11G1100200.v1.1 MD11G1101200.v1.1 MD11G1101800.v1.1 MD11G1102100.v1.1 MD11G1104300.v1.1 MD11G1105000.v1.1 MD11G1106000.v1.1 MD11G1106300.v1.1 MD11G1106700.v1.1 MD11G1106900.v1.1 MD11G1107000.v1.1 MD11G1107900.v1.1 MD11G1261200.v1.1 MD15G1402100.v1.1
prunus_persica	Prupe.6G074600_v2.0.a1
pyrus_communis	pycom03g07200 pycom11g08440
rosa_chinensis	RchiOBHm_Chr5g0065311
rosa_laevigata	RLG00000035780 RLG00000035781 RLG00000035782
rosa_multiflora	Rmu_sc0009942.1_g000006 Rmu_sc0013827.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015870
rosa_rugosa	Rorug05G0371200
rosa_samantha	Rh5AG429000 Rh5BG444300 Rh5CG466500 Rh5DG456600
rosa_wichuraiana	Rw5G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	563
AccI	GTMKAC	2 cut(s)	81, 416
AccIII	TCCGGA	1 cut(s)	254
AciI	CCGC	2 cut(s)	323, 576
AclWI	GGATC	1 cut(s)	716
AcsI	RAATTY	2 cut(s)	139, 207
AcvI	CACGTG	1 cut(s)	220
AfaI	GTAC	2 cut(s)	340, 553
AflIII	ACRYGT	2 cut(s)	217, 331
AgsI	TTSAA	2 cut(s)	138, 673
AjiI	CACGTC	1 cut(s)	332
AjnI	CCWGG	3 cut(s)	325, 426, 470
AluBI	AGCT	4 cut(s)	31, 489, 748, 760
AluI	AGCT	4 cut(s)	31, 489, 748, 760
Alw21I	GWGCWC	2 cut(s)	33, 115
Alw26I	GTCTC	1 cut(s)	256
Alw44I	GTGCAC	1 cut(s)	111
AlwI	GGATC	1 cut(s)	716
AlwNI	CAGNNNCTG	1 cut(s)	732
Aor13HI	TCCGGA	1 cut(s)	254
AoxI	GGCC	2 cut(s)	302, 424
ApaLI	GTGCAC	1 cut(s)	111
ApeKI	GCWGC	2 cut(s)	158, 745
ApoI	RAATTY	2 cut(s)	139, 207
AseI	ATTAAT	1 cut(s)	612
Asp700I	GAANNNNTTC	1 cut(s)	709
AspLEI	GCGC	1 cut(s)	564
AspS9I	GGNCC	1 cut(s)	385
AvaII	GGWCC	1 cut(s)	385
BaeGI	GKGCMC	1 cut(s)	115
BanII	GRGCYC	1 cut(s)	33
BbrPI	CACGTG	1 cut(s)	220
Bbv12I	GWGCWC	2 cut(s)	33, 115
BbvI	GCAGC	2 cut(s)	170, 757
BciT130I	CCWGG	3 cut(s)	327, 428, 472
BclI	TGATCA	1 cut(s)	618
BcoDI	GTCTC	1 cut(s)	256
BfaI	CTAG	1 cut(s)	642
BisI	GCNGC	2 cut(s)	159, 746
BlpI	GCTNAGC	1 cut(s)	756
BlsI	GCNGC	2 cut(s)	160, 747
BmcAI	AGTACT	1 cut(s)	340
Bme1390I	CCNGG	3 cut(s)	327, 428, 472
Bme18I	GGWCC	1 cut(s)	385
BmgBI	CACGTC	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	385
BmiI	GGNNCC	1 cut(s)	386
BmrFI	CCNGG	3 cut(s)	327, 428, 472
BmrI	ACTGGG	1 cut(s)	286
BmsI	GCATC	1 cut(s)	81
BmuI	ACTGGG	1 cut(s)	286
BpmI	CTGGAG	1 cut(s)	327
Bpu1102I	GCTNAGC	1 cut(s)	756
BsaAI	YACGTR	1 cut(s)	220
BsaWI	WCCGGW	1 cut(s)	254
BsaXI	ACNNNNNCTCC	2 cut(s)	234, 264
Bse1I	ACTGG	2 cut(s)	292, 344
Bse3DI	GCAATG	2 cut(s)	161, 697
BseAI	TCCGGA	1 cut(s)	254
BseBI	CCWGG	3 cut(s)	327, 428, 472
BseMI	GCAATG	2 cut(s)	161, 697
BseMII	CTCAG	2 cut(s)	747, 755
BseNI	ACTGG	2 cut(s)	292, 344
BseSI	GKGCMC	1 cut(s)	115
BseXI	GCAGC	2 cut(s)	170, 757
BseYI	CCCAGC	1 cut(s)	725
BshFI	GGCC	2 cut(s)	304, 426
BsiHKAI	GWGCWC	2 cut(s)	33, 115
BsiSI	CCGG	2 cut(s)	255, 736
BslFI	GGGAC	1 cut(s)	479
BsmAI	GTCTC	1 cut(s)	256
BsmFI	GGGAC	1 cut(s)	479
BsmI	GAATGC	2 cut(s)	322, 629
BsnI	GGCC	2 cut(s)	304, 426
Bsp1286I	GDGCHC	2 cut(s)	33, 115
Bsp13I	TCCGGA	1 cut(s)	254
Bsp143I	GATC	5 cut(s)	124, 145, 282, 618, 721
Bsp1720I	GCTNAGC	1 cut(s)	756
BspACI	CCGC	2 cut(s)	323, 576
BspANI	GGCC	2 cut(s)	304, 426
BspCNI	CTCAG	2 cut(s)	748, 754
BspEI	TCCGGA	1 cut(s)	254
BspLI	GGNNCC	1 cut(s)	386
BspPI	GGATC	1 cut(s)	716
BsrDI	GCAATG	2 cut(s)	161, 697
BsrI	ACTGG	2 cut(s)	292, 344
BssMI	GATC	5 cut(s)	124, 145, 282, 618, 721
BssNAI	GTATAC	2 cut(s)	82, 417
Bst1107I	GTATAC	2 cut(s)	82, 417
Bst2UI	CCWGG	3 cut(s)	327, 428, 472
Bst4CI	ACNGT	1 cut(s)	133
BstBAI	YACGTR	1 cut(s)	220
BstC8I	GCNNGC	2 cut(s)	20, 605
BstDEI	CTNAG	3 cut(s)	196, 741, 756
BstHHI	GCGC	1 cut(s)	564
BstKTI	GATC	5 cut(s)	127, 148, 285, 621, 724
BstMAI	GTCTC	1 cut(s)	256
BstMBI	GATC	5 cut(s)	124, 145, 282, 618, 721
BstMWI	GCNNNNNNNGC	1 cut(s)	28
BstNI	CCWGG	3 cut(s)	327, 428, 472
BstNSI	RCATGY	1 cut(s)	22
BstSCI	CCNGG	3 cut(s)	325, 426, 470
BstSLI	GKGCMC	1 cut(s)	115
BstV1I	GCAGC	2 cut(s)	170, 757
BstX2I	RGATCY	1 cut(s)	721
BstYI	RGATCY	1 cut(s)	721
BstZ17I	GTATAC	2 cut(s)	82, 417
BsuRI	GGCC	2 cut(s)	304, 426
BtrI	CACGTC	1 cut(s)	332
BtsI	GCAGTG	1 cut(s)	207
BtsIMutI	CAGTG	1 cut(s)	207
Cac8I	GCNNGC	2 cut(s)	20, 605
CaiI	CAGNNNCTG	1 cut(s)	732
CfoI	GCGC	1 cut(s)	564
Cfr13I	GGNCC	1 cut(s)	385
Csp6I	GTAC	2 cut(s)	339, 552
CviAII	CATG	2 cut(s)	19, 622
CviJI	RGCY	8 cut(s)	31, 304, 426, 489, 654, 729, 748, 760
CviKI_1	RGCY	8 cut(s)	31, 304, 426, 489, 654, 729, 748, 760
CviQI	GTAC	2 cut(s)	339, 552
DdeI	CTNAG	3 cut(s)	196, 741, 756
DpnI	GATC	5 cut(s)	126, 147, 284, 620, 723
DpnII	GATC	5 cut(s)	124, 145, 282, 618, 721
EciI	GGCGGA	2 cut(s)	312, 565
Ecl136II	GAGCTC	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	33
Eco47I	GGWCC	1 cut(s)	385
Eco53kI	GAGCTC	1 cut(s)	31
Eco72I	CACGTG	1 cut(s)	220
EcoICRI	GAGCTC	1 cut(s)	31
EcoO109I	RGGNCCY	1 cut(s)	385
EcoRI	GAATTC	1 cut(s)	207
EcoRII	CCWGG	3 cut(s)	325, 426, 470
EcoT38I	GRGCYC	1 cut(s)	33
FaeI	CATG	2 cut(s)	22, 625
FaqI	GGGAC	1 cut(s)	479
FatI	CATG	2 cut(s)	18, 621
FbaI	TGATCA	1 cut(s)	618
FblI	GTMKAC	2 cut(s)	81, 416
Fnu4HI	GCNGC	2 cut(s)	159, 746
FriOI	GRGCYC	1 cut(s)	33
Fsp4HI	GCNGC	2 cut(s)	159, 746
FspBI	CTAG	1 cut(s)	642
FspI	TGCGCA	1 cut(s)	563
GlaI	GCGC	1 cut(s)	563
GluI	GCNGC	2 cut(s)	159, 746
GsaI	CCCAGC	1 cut(s)	729
GsuI	CTGGAG	1 cut(s)	327
HaeIII	GGCC	2 cut(s)	304, 426
HapII	CCGG	2 cut(s)	255, 736
HhaI	GCGC	1 cut(s)	564
Hin1II	CATG	2 cut(s)	22, 625
Hin6I	GCGC	1 cut(s)	562
HinP1I	GCGC	1 cut(s)	562
HinfI	GANTC	2 cut(s)	664, 739
HpaII	CCGG	2 cut(s)	255, 736
Hpy166II	GTNNAC	4 cut(s)	82, 113, 223, 417
Hpy188I	TCNGA	3 cut(s)	28, 540, 721
Hpy188III	TCNNGA	1 cut(s)	255
Hpy8I	GTNNAC	4 cut(s)	82, 113, 223, 417
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4IV	ACGT	4 cut(s)	219, 331, 365, 680
HpyCH4V	TGCA	5 cut(s)	94, 113, 516, 629, 765
HpyF10VI	GCNNNNNNNGC	1 cut(s)	28
HpyF3I	CTNAG	3 cut(s)	196, 741, 756
HpySE526I	ACGT	4 cut(s)	219, 331, 365, 680
Hsp92II	CATG	2 cut(s)	22, 625
HspAI	GCGC	1 cut(s)	562
Kpn2I	TCCGGA	1 cut(s)	254
Ksp22I	TGATCA	1 cut(s)	618
Kzo9I	GATC	5 cut(s)	124, 145, 282, 618, 721
LmnI	GCTCC	2 cut(s)	28, 325
Lsp1109I	GCAGC	2 cut(s)	170, 757
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	1 cut(s)	642
MaeII	ACGT	4 cut(s)	219, 331, 365, 680
MaeIII	GTNAC	2 cut(s)	430, 519
MalI	GATC	5 cut(s)	126, 147, 284, 620, 723
MboI	GATC	5 cut(s)	124, 145, 282, 618, 721
MboII	GAAGA	1 cut(s)	254
MflI	RGATCY	1 cut(s)	721
MhlI	GDGCHC	2 cut(s)	33, 115
MluCI	AATT	4 cut(s)	40, 139, 207, 511
MlyI	GAGTC	1 cut(s)	733
MnlI	CCTC	4 cut(s)	107, 236, 398, 437
MroI	TCCGGA	1 cut(s)	254
MroXI	GAANNNNTTC	1 cut(s)	709
MseI	TTAA	6 cut(s)	297, 348, 569, 581, 612, 677
MslI	CAYNNNNRTG	1 cut(s)	505
MspI	CCGG	2 cut(s)	255, 736
MspR9I	CCNGG	3 cut(s)	327, 428, 472
Mva1269I	GAATGC	2 cut(s)	322, 629
MvaI	CCWGG	3 cut(s)	327, 428, 472
MwoI	GCNNNNNNNGC	1 cut(s)	28
NdeII	GATC	5 cut(s)	124, 145, 282, 618, 721
NlaIII	CATG	2 cut(s)	22, 625
NlaIV	GGNNCC	1 cut(s)	386
NmuCI	GTSAC	1 cut(s)	519
NsbI	TGCGCA	1 cut(s)	563
NspI	RCATGY	1 cut(s)	22
PaeI	GCATGC	1 cut(s)	22
PctI	GAATGC	2 cut(s)	322, 629
PdmI	GAANNNNTTC	1 cut(s)	709
PfeI	GAWTC	1 cut(s)	664
PkrI	GCNGC	2 cut(s)	160, 747
PleI	GAGTC	1 cut(s)	733
PmaCI	CACGTG	1 cut(s)	220
PmlI	CACGTG	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	733
Ppu21I	YACGTR	1 cut(s)	220
PpuMI	RGGWCCY	1 cut(s)	385
PshBI	ATTAAT	1 cut(s)	612
Psp124BI	GAGCTC	1 cut(s)	33
Psp5II	RGGWCCY	1 cut(s)	385
Psp6I	CCWGG	3 cut(s)	325, 426, 470
PspCI	CACGTG	1 cut(s)	220
PspFI	CCCAGC	1 cut(s)	725
PspGI	CCWGG	3 cut(s)	325, 426, 470
PspN4I	GGNNCC	1 cut(s)	386
PspPI	GGNCC	1 cut(s)	385
PspPPI	RGGWCCY	1 cut(s)	385
PstNI	CAGNNNCTG	1 cut(s)	732
PsuI	RGATCY	1 cut(s)	721
RsaI	GTAC	2 cut(s)	340, 553
RsaNI	GTAC	2 cut(s)	339, 552
RseI	CAYNNNNRTG	1 cut(s)	505
SacI	GAGCTC	1 cut(s)	33
SaqAI	TTAA	6 cut(s)	297, 348, 569, 581, 612, 677
SatI	GCNGC	2 cut(s)	159, 746
Sau3AI	GATC	5 cut(s)	124, 145, 282, 618, 721
Sau96I	GGNCC	1 cut(s)	385
ScaI	AGTACT	1 cut(s)	340
SchI	GAGTC	1 cut(s)	733
ScrFI	CCNGG	3 cut(s)	327, 428, 472
SduI	GDGCHC	2 cut(s)	33, 115
SfaNI	GCATC	1 cut(s)	81
SinI	GGWCC	1 cut(s)	385
SmiMI	CAYNNNNRTG	1 cut(s)	505
SphI	GCATGC	1 cut(s)	22
Sse9I	AATT	4 cut(s)	40, 139, 207, 511
SsiI	CCGC	2 cut(s)	323, 576
SspI	AATATT	1 cut(s)	585
SspMI	CTAG	1 cut(s)	642
SstI	GAGCTC	1 cut(s)	33
StyD4I	CCNGG	3 cut(s)	325, 426, 470
TaaI	ACNGT	1 cut(s)	133
TaiI	ACGT	4 cut(s)	222, 334, 368, 683
TaqI	TCGA	3 cut(s)	144, 442, 650
TasI	AATT	4 cut(s)	40, 139, 207, 511
TatI	WGTACW	2 cut(s)	338, 551
TfiI	GAWTC	1 cut(s)	664
Tru1I	TTAA	6 cut(s)	297, 348, 569, 581, 612, 677
Tru9I	TTAA	6 cut(s)	297, 348, 569, 581, 612, 677
TscAI	CASTG	1 cut(s)	207
TseFI	GTSAC	1 cut(s)	519
TseI	GCWGC	2 cut(s)	158, 745
Tsp45I	GTSAC	1 cut(s)	519
TspDTI	ATGAA	2 cut(s)	169, 702
TspGWI	ACGGA	1 cut(s)	328
TspRI	CASTG	1 cut(s)	207
VneI	GTGCAC	1 cut(s)	111
VpaK11BI	GGWCC	1 cut(s)	385
VspI	ATTAAT	1 cut(s)	612
XapI	RAATTY	2 cut(s)	139, 207
XceI	RCATGY	1 cut(s)	22
XmiI	GTMKAC	2 cut(s)	81, 416
XmnI	GAANNNNTTC	1 cut(s)	709
XspI	CTAG	1 cut(s)	642
ZrmI	AGTACT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.