Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002566

Physical Location & Seq

Genomic Coordinates Reverse (-)

9461724 .. 9462763

Gene Structure 1040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1107000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGGTGCTCTAGACGCGCAGAGAGTGGGAGTGGTTCATCAACACCAGGGATGGCGGCTGATCTCATGTATGTGGTTACATGCTGGAGTTTTCCATGTGCTTGCCAATATGCTGATTCGAATTGGTTTCCTATATCTCACGTCTGGTTTTGGTGGGAGTTTGCTTTCAGCTCTTTTTATTCAATATGGTATTTCTGTTGGTGCTTCTGGTGCACTTTTTGGTTTACTCGGAAGCATGCTTTCAGAGCTCATATCAAATTGGACAATGTATGTAAATAAGGTAAATAAAGTTTCTGTATACTCAATGATGCACCTCTTTATAGTATGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006928 GO:0008150 GO:0008283 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

111

Amino Acids

12.02

Weight (kDa)

9.18

Isoelectric Point (pI)

20.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	15 - 39	2.5e-06	Rhomboid domain
Rhomboid	PF01694	39 - 105	1e-11	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29050 AT2G29050
fragaria_vesca	FvH4_3g36420 FvH4_3g36420 FvH4_3g36420 FvH4_3g36420
malus_domestica	MD00G1013900.v1.1 MD00G1178600.v1.1 MD00G1178800.v1.1 MD03G1090500.v1.1 MD11G1100200.v1.1 MD11G1101200.v1.1 MD11G1101800.v1.1 MD11G1102100.v1.1 MD11G1104300.v1.1 MD11G1105000.v1.1 MD11G1106000.v1.1 MD11G1106300.v1.1 MD11G1106700.v1.1 MD11G1106900.v1.1 MD11G1107000.v1.1 MD11G1107900.v1.1 MD11G1261200.v1.1 MD15G1402100.v1.1
prunus_persica	Prupe.6G074600_v2.0.a1
pyrus_communis	pycom03g07200 pycom11g08440
rosa_chinensis	RchiOBHm_Chr5g0065311
rosa_laevigata	RLG00000035780 RLG00000035781 RLG00000035782
rosa_multiflora	Rmu_sc0009942.1_g000006 Rmu_sc0013827.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015870
rosa_rugosa	Rorug05G0371200
rosa_samantha	Rh5AG429000 Rh5BG444300 Rh5CG466500 Rh5DG456600
rosa_wichuraiana	Rw5G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	297
AccII	CGCG	1 cut(s)	17
AciI	CCGC	1 cut(s)	55
AgsI	TTSAA	1 cut(s)	182
AjiI	CACGTC	1 cut(s)	141
AjnI	CCWGG	1 cut(s)	45
AluBI	AGCT	2 cut(s)	170, 247
AluI	AGCT	2 cut(s)	170, 247
Alw21I	GWGCWC	3 cut(s)	10, 214, 249
Alw44I	GTGCAC	1 cut(s)	210
ApaLI	GTGCAC	1 cut(s)	210
AspLEI	GCGC	1 cut(s)	19
AsuII	TTCGAA	1 cut(s)	118
BaeGI	GKGCMC	1 cut(s)	214
BanII	GRGCYC	1 cut(s)	249
Bbv12I	GWGCWC	3 cut(s)	10, 214, 249
BccI	CCATC	1 cut(s)	45
BciT130I	CCWGG	1 cut(s)	47
BfaI	CTAG	1 cut(s)	11
BisI	GCNGC	1 cut(s)	56
BlsI	GCNGC	1 cut(s)	57
Bme1390I	CCNGG	1 cut(s)	47
BmgBI	CACGTC	1 cut(s)	141
BmrFI	CCNGG	1 cut(s)	47
BmsI	GCATC	1 cut(s)	297
BpmI	CTGGAG	1 cut(s)	105
Bpu14I	TTCGAA	1 cut(s)	118
BsaJI	CCNNGG	1 cut(s)	46
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	46
BseGI	GGATG	1 cut(s)	56
BseSI	GKGCMC	1 cut(s)	214
Bsh1236I	CGCG	1 cut(s)	17
BsiHKAI	GWGCWC	3 cut(s)	10, 214, 249
Bsp119I	TTCGAA	1 cut(s)	118
Bsp1286I	GDGCHC	3 cut(s)	10, 214, 249
Bsp143I	GATC	1 cut(s)	60
BspACI	CCGC	1 cut(s)	55
BspFNI	CGCG	1 cut(s)	17
BspT104I	TTCGAA	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	46
BssMI	GATC	1 cut(s)	60
BssNAI	GTATAC	1 cut(s)	298
Bst1107I	GTATAC	1 cut(s)	298
Bst2UI	CCWGG	1 cut(s)	47
BstBI	TTCGAA	1 cut(s)	118
BstC8I	GCNNGC	2 cut(s)	102, 236
BstF5I	GGATG	1 cut(s)	56
BstFNI	CGCG	1 cut(s)	17
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	1 cut(s)	63
BstMBI	GATC	1 cut(s)	60
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 209, 244
BstNI	CCWGG	1 cut(s)	47
BstNSI	RCATGY	2 cut(s)	83, 238
BstSCI	CCNGG	1 cut(s)	45
BstSLI	GKGCMC	1 cut(s)	214
BstUI	CGCG	1 cut(s)	17
BstZ17I	GTATAC	1 cut(s)	298
BtrI	CACGTC	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	56
Cac8I	GCNNGC	2 cut(s)	102, 236
CfoI	GCGC	1 cut(s)	19
CseI	GACGC	1 cut(s)	23
CviAII	CATG	5 cut(s)	66, 80, 95, 235, 330
CviJI	RGCY	3 cut(s)	58, 170, 247
CviKI_1	RGCY	3 cut(s)	58, 170, 247
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
Ecl136II	GAGCTC	1 cut(s)	247
Eco24I	GRGCYC	1 cut(s)	249
Eco53kI	GAGCTC	1 cut(s)	247
EcoICRI	GAGCTC	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	45
EcoT38I	GRGCYC	1 cut(s)	249
FaeI	CATG	5 cut(s)	69, 83, 98, 238, 333
FatI	CATG	5 cut(s)	65, 79, 94, 234, 329
FblI	GTMKAC	1 cut(s)	297
Fnu4HI	GCNGC	1 cut(s)	56
FokI	GGATG	1 cut(s)	63
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	1 cut(s)	56
FspBI	CTAG	1 cut(s)	11
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	1 cut(s)	56
GsuI	CTGGAG	1 cut(s)	105
HgaI	GACGC	1 cut(s)	23
HhaI	GCGC	1 cut(s)	19
Hin1II	CATG	5 cut(s)	69, 83, 98, 238, 333
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HinfI	GANTC	1 cut(s)	115
Hpy166II	GTNNAC	3 cut(s)	212, 224, 298
Hpy188I	TCNGA	2 cut(s)	230, 244
Hpy188III	TCNNGA	1 cut(s)	11
Hpy8I	GTNNAC	3 cut(s)	212, 224, 298
HpyCH4IV	ACGT	1 cut(s)	140
HpyCH4V	TGCA	3 cut(s)	212, 310, 329
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 209, 244
HpySE526I	ACGT	1 cut(s)	140
Hsp92II	CATG	5 cut(s)	69, 83, 98, 238, 333
HspAI	GCGC	1 cut(s)	17
Kzo9I	GATC	1 cut(s)	60
LpnPI	CCDG	5 cut(s)	32, 59, 69, 129, 192
LweI	GCATC	1 cut(s)	297
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	1 cut(s)	140
MaeIII	GTNAC	1 cut(s)	75
MalI	GATC	1 cut(s)	62
MboI	GATC	1 cut(s)	60
MhlI	GDGCHC	3 cut(s)	10, 214, 249
MluCI	AATT	2 cut(s)	120, 256
MnlI	CCTC	1 cut(s)	323
MslI	CAYNNNNRTG	1 cut(s)	70
MspR9I	CCNGG	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	47
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	3 cut(s)	14, 209, 244
NdeII	GATC	1 cut(s)	60
NlaIII	CATG	5 cut(s)	69, 83, 98, 238, 333
NspI	RCATGY	2 cut(s)	83, 238
NspV	TTCGAA	1 cut(s)	118
PaeI	GCATGC	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	115
PkrI	GCNGC	1 cut(s)	57
Psp124BI	GAGCTC	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	45
RseI	CAYNNNNRTG	1 cut(s)	70
SacI	GAGCTC	1 cut(s)	249
SatI	GCNGC	1 cut(s)	56
Sau3AI	GATC	1 cut(s)	60
ScrFI	CCNGG	1 cut(s)	47
SduI	GDGCHC	3 cut(s)	10, 214, 249
SetI	ASST	5 cut(s)	143, 172, 249, 282, 315
SfaNI	GCATC	1 cut(s)	297
SfuI	TTCGAA	1 cut(s)	118
SmiMI	CAYNNNNRTG	1 cut(s)	70
SphI	GCATGC	1 cut(s)	238
Sse9I	AATT	2 cut(s)	120, 256
SsiI	CCGC	1 cut(s)	55
SspMI	CTAG	1 cut(s)	11
SstI	GAGCTC	1 cut(s)	249
StyD4I	CCNGG	1 cut(s)	45
TaiI	ACGT	1 cut(s)	143
TaqI	TCGA	1 cut(s)	118
TasI	AATT	2 cut(s)	120, 256
TauI	GCSGC	1 cut(s)	58
TfiI	GAWTC	1 cut(s)	115
TspDTI	ATGAA	1 cut(s)	26
VneI	GTGCAC	1 cut(s)	210
XbaI	TCTAGA	1 cut(s)	10
XceI	RCATGY	2 cut(s)	83, 238
XmiI	GTMKAC	1 cut(s)	297
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.