Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002566

Physical Location & Seq

Genomic Coordinates Reverse (-)

31222080 .. 31226615

Gene Structure 4536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g36420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGAGAGACGGCAGCAACCTCCTCCGACGGAGATAGAGATAAAGGTGGTCACTCCACGGCGGGGTGACAACATGGTCCACCCGGCGGGCCAGTCTCCGGTACCGGCGCCGGCTCCGGCGAGGACCTTCAGCGAAGTCTACAGGCCGTTCAAGAGGTGGAAATCGTGGCTGGTGCCGTGTTTTGTGGTGGCCAACATTGTGGTTTTTGTGGTGACCATGTTTCTGAATAATTGCCCCAAGAACTCTGATAAGTGCATTGCAAGGTTTCTGGGTCGCTTTTCGTTTCAGCCCTTCAAAGAAAACCCACTTCTGGGTCCATCTTCATCCACATTAGACAAGATGGGTGCTCTAGAAGTGCAGAAAATGATCCATGGCCACCATCAGGCATGGCGGTTGCTCTCCTGTATGTGGCTACATGCTGGAGTTTTCCATATACTGGCCAATATGCTGAGTCTTGTATTTATTGGCATTCGGCTTGAGCAAGAATTTGGGTTTGTCCGAATTGGGTTGGTTTATGTCATCTCTGGTTTTGGCGGGAGTTTACTCTCAGCTCTTTTTATTGACGGTGGTATTTCTGTTGGTGCTTCTGGTGCACTTTTTGGTTTACTTGGAAGCATGCTTTCAGAGCTTATATCAAACTGGACAATATATGCAAACAAGCAGTGGGTATTCTTCCACATGTGGACAACTTTGCTCATATTGGAGGATTTGTTTCTGGATTTCTCCTTGGATTTGTGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006928 GO:0008150 GO:0008283 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

248

Amino Acids

27.81

Weight (kDa)

8.88

Isoelectric Point (pI)

52.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	127 - 230	4.1e-30	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29050 AT2G29050
fragaria_vesca	FvH4_3g36420 FvH4_3g36420 FvH4_3g36420 FvH4_3g36420
malus_domestica	MD00G1013900.v1.1 MD00G1178600.v1.1 MD00G1178800.v1.1 MD03G1090500.v1.1 MD11G1100200.v1.1 MD11G1101200.v1.1 MD11G1101800.v1.1 MD11G1102100.v1.1 MD11G1104300.v1.1 MD11G1105000.v1.1 MD11G1106000.v1.1 MD11G1106300.v1.1 MD11G1106700.v1.1 MD11G1106900.v1.1 MD11G1107000.v1.1 MD11G1107900.v1.1 MD11G1261200.v1.1 MD15G1402100.v1.1
prunus_persica	Prupe.6G074600_v2.0.a1
pyrus_communis	pycom03g07200 pycom11g08440
rosa_chinensis	RchiOBHm_Chr5g0065311
rosa_laevigata	RLG00000035780 RLG00000035781 RLG00000035782
rosa_multiflora	Rmu_sc0009942.1_g000006 Rmu_sc0013827.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015870
rosa_rugosa	Rorug05G0371200
rosa_samantha	Rh5AG429000 Rh5BG444300 Rh5CG466500 Rh5DG456600
rosa_wichuraiana	Rw5G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
Acc65I	GGTACC	1 cut(s)	100
AccB1I	GGYRCC	3 cut(s)	100, 106, 172
AccB7I	CCANNNNNTGG	1 cut(s)	436
AccI	GTMKAC	1 cut(s)	138
AciI	CCGC	4 cut(s)	61, 86, 391, 534
AclWI	GGATC	1 cut(s)	361
AcoI	YGGCCR	3 cut(s)	189, 373, 438
AcsI	RAATTY	1 cut(s)	485
AcuI	CTGAAG	1 cut(s)	112
AcyI	GRCGYC	1 cut(s)	107
AfaI	GTAC	1 cut(s)	102
AfiI	CCNNNNNNNGG	8 cut(s)	62, 85, 97, 310, 311, 382, 408, 436
AflIII	ACRYGT	1 cut(s)	678
AgsI	TTSAA	2 cut(s)	151, 295
AluBI	AGCT	2 cut(s)	551, 628
AluI	AGCT	2 cut(s)	551, 628
Alw21I	GWGCWC	2 cut(s)	349, 595
Alw26I	GTCTC	1 cut(s)	99
Alw44I	GTGCAC	1 cut(s)	591
AlwI	GGATC	1 cut(s)	361
AoxI	GGCC	5 cut(s)	88, 143, 189, 373, 438
ApaLI	GTGCAC	1 cut(s)	591
ApeKI	GCWGC	1 cut(s)	13
ApoI	RAATTY	1 cut(s)	485
Asp718I	GGTACC	1 cut(s)	100
AspLEI	GCGC	1 cut(s)	109
AspS9I	GGNCC	4 cut(s)	76, 88, 123, 314
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	2 cut(s)	77, 223
AvaII	GGWCC	3 cut(s)	76, 123, 314
BaeGI	GKGCMC	1 cut(s)	595
BalI	TGGCCA	3 cut(s)	191, 375, 440
BanI	GGYRCC	3 cut(s)	100, 106, 172
Bbv12I	GWGCWC	2 cut(s)	349, 595
BbvI	GCAGC	1 cut(s)	25
BccI	CCATC	3 cut(s)	325, 334, 387
BceAI	ACGGC	4 cut(s)	26, 74, 130, 160
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	1 cut(s)	99
BfaI	CTAG	1 cut(s)	350
BfmI	CTRYAG	1 cut(s)	139
BfoI	RGCGCY	1 cut(s)	110
BisI	GCNGC	1 cut(s)	14
BlsI	GCNGC	1 cut(s)	15
Bme1390I	CCNGG	1 cut(s)	83
Bme18I	GGWCC	3 cut(s)	76, 123, 314
BmgT120I	GGNCC	4 cut(s)	76, 88, 123, 314
BmiI	GGNNCC	5 cut(s)	102, 108, 114, 174, 315
BmrFI	CCNGG	1 cut(s)	83
BpmI	CTGGAG	1 cut(s)	441
BpuEI	CTTGAG	1 cut(s)	497
BpuMI	CCSGG	1 cut(s)	83
BsaHI	GRCGYC	1 cut(s)	107
BsaJI	CCNNGG	3 cut(s)	56, 370, 726
BsaWI	WCCGGW	1 cut(s)	97
BsaXI	ACNNNNNCTCC	2 cut(s)	695, 725
Bsc4I	CCNNNNNNNGG	8 cut(s)	62, 85, 97, 310, 311, 382, 408, 436
Bse118I	RCCGGY	2 cut(s)	103, 109
Bse1I	ACTGG	3 cut(s)	91, 441, 644
Bse3DI	GCAATG	1 cut(s)	255
BseDI	CCNNGG	3 cut(s)	56, 370, 726
BseGI	GGATG	1 cut(s)	323
BseLI	CCNNNNNNNGG	8 cut(s)	62, 85, 97, 310, 311, 382, 408, 436
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	2 cut(s)	440, 561
BseNI	ACTGG	3 cut(s)	91, 441, 644
BseRI	GAGGAG	1 cut(s)	12
BseSI	GKGCMC	1 cut(s)	595
BseXI	GCAGC	1 cut(s)	25
BsgI	GTGCAG	1 cut(s)	377
BshFI	GGCC	5 cut(s)	90, 145, 191, 375, 440
BshNI	GGYRCC	3 cut(s)	100, 106, 172
BsiHKAI	GWGCWC	2 cut(s)	349, 595
BsiSI	CCGG	5 cut(s)	83, 98, 104, 110, 116
BslI	CCNNNNNNNGG	8 cut(s)	62, 85, 97, 310, 311, 382, 408, 436
BsmAI	GTCTC	1 cut(s)	99
BsmI	GAATGC	1 cut(s)	468
BsnI	GGCC	5 cut(s)	90, 145, 191, 375, 440
Bsp1286I	GDGCHC	2 cut(s)	349, 595
Bsp143I	GATC	1 cut(s)	366
Bsp19I	CCATGG	1 cut(s)	370
BspACI	CCGC	4 cut(s)	61, 86, 391, 534
BspANI	GGCC	5 cut(s)	90, 145, 191, 375, 440
BspCNI	CTCAG	2 cut(s)	441, 560
BspLI	GGNNCC	5 cut(s)	102, 108, 114, 174, 315
BspPI	GGATC	1 cut(s)	361
BspT107I	GGYRCC	3 cut(s)	100, 106, 172
BsrDI	GCAATG	1 cut(s)	255
BsrFI	RCCGGY	2 cut(s)	103, 109
BsrI	ACTGG	3 cut(s)	91, 441, 644
BssAI	RCCGGY	2 cut(s)	103, 109
BssECI	CCNNGG	3 cut(s)	56, 370, 726
BssMI	GATC	1 cut(s)	366
BssNI	GRCGYC	1 cut(s)	107
BssT1I	CCWWGG	2 cut(s)	370, 726
Bst4CI	ACNGT	1 cut(s)	566
BstACI	GRCGYC	1 cut(s)	107
BstC8I	GCNNGC	3 cut(s)	88, 111, 617
BstDEI	CTNAG	2 cut(s)	449, 547
BstDSI	CCRYGG	2 cut(s)	56, 370
BstEII	GGTNACC	1 cut(s)	211
BstF5I	GGATG	1 cut(s)	323
BstH2I	RGCGCY	1 cut(s)	110
BstHHI	GCGC	1 cut(s)	109
BstKTI	GATC	1 cut(s)	369
BstMAI	GTCTC	1 cut(s)	99
BstMBI	GATC	1 cut(s)	366
BstMWI	GCNNNNNNNGC	2 cut(s)	590, 625
BstNSI	RCATGY	3 cut(s)	419, 619, 682
BstPI	GGTNACC	1 cut(s)	211
BstSCI	CCNGG	1 cut(s)	81
BstSFI	CTRYAG	1 cut(s)	139
BstSLI	GKGCMC	1 cut(s)	595
BstV1I	GCAGC	1 cut(s)	25
BstXI	CCANNNNNNTGG	1 cut(s)	199
BsuRI	GGCC	5 cut(s)	90, 145, 191, 375, 440
BtgI	CCRYGG	2 cut(s)	56, 370
BtsCI	GGATG	1 cut(s)	323
BtsI	GCAGTG	1 cut(s)	668
BtsIMutI	CAGTG	1 cut(s)	668
Cac8I	GCNNGC	3 cut(s)	88, 111, 617
CfoI	GCGC	1 cut(s)	109
Cfr10I	RCCGGY	2 cut(s)	103, 109
Cfr13I	GGNCC	4 cut(s)	76, 88, 123, 314
Csp6I	GTAC	1 cut(s)	101
CviAII	CATG	7 cut(s)	73, 217, 371, 387, 416, 616, 679
CviQI	GTAC	1 cut(s)	101
DdeI	CTNAG	2 cut(s)	449, 547
DinI	GGCGCC	1 cut(s)	108
DpnI	GATC	1 cut(s)	368
DpnII	GATC	1 cut(s)	366
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
EaeI	YGGCCR	3 cut(s)	189, 373, 438
Eco130I	CCWWGG	2 cut(s)	370, 726
Eco47I	GGWCC	3 cut(s)	76, 123, 314
Eco57I	CTGAAG	1 cut(s)	112
Eco91I	GGTNACC	1 cut(s)	211
EcoO109I	RGGNCCY	1 cut(s)	123
EcoO65I	GGTNACC	1 cut(s)	211
EcoT14I	CCWWGG	2 cut(s)	370, 726
EgeI	GGCGCC	1 cut(s)	108
EheI	GGCGCC	1 cut(s)	108
ErhI	CCWWGG	2 cut(s)	370, 726
FaeI	CATG	7 cut(s)	76, 220, 374, 390, 419, 619, 682
FatI	CATG	7 cut(s)	72, 216, 370, 386, 415, 615, 678
FauI	CCCGC	3 cut(s)	54, 79, 527
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	1 cut(s)	14
FokI	GGATG	1 cut(s)	310
Fsp4HI	GCNGC	1 cut(s)	14
FspBI	CTAG	1 cut(s)	350
GlaI	GCGC	1 cut(s)	108
GluI	GCNGC	1 cut(s)	14
GsuI	CTGGAG	1 cut(s)	441
HaeII	RGCGCY	1 cut(s)	110
HaeIII	GGCC	5 cut(s)	90, 145, 191, 375, 440
HapII	CCGG	5 cut(s)	83, 98, 104, 110, 116
HhaI	GCGC	1 cut(s)	109
Hin1I	GRCGYC	1 cut(s)	107
Hin1II	CATG	7 cut(s)	76, 220, 374, 390, 419, 619, 682
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HinfI	GANTC	1 cut(s)	451
HpaII	CCGG	5 cut(s)	83, 98, 104, 110, 116
HphI	GGTGA	2 cut(s)	77, 223
Hpy166II	GTNNAC	6 cut(s)	79, 139, 542, 593, 605, 684
Hpy188I	TCNGA	6 cut(s)	27, 225, 247, 500, 625, 743
Hpy188III	TCNNGA	3 cut(s)	151, 350, 716
Hpy8I	GTNNAC	6 cut(s)	79, 139, 542, 593, 605, 684
Hpy99I	CGWCG	1 cut(s)	31
HpyAV	CCTTC	2 cut(s)	136, 301
HpyCH4III	ACNGT	1 cut(s)	566
HpyCH4V	TGCA	5 cut(s)	255, 260, 358, 593, 653
HpyF10VI	GCNNNNNNNGC	2 cut(s)	590, 625
HpyF3I	CTNAG	2 cut(s)	449, 547
Hsp92I	GRCGYC	1 cut(s)	107
Hsp92II	CATG	7 cut(s)	76, 220, 374, 390, 419, 619, 682
HspAI	GCGC	1 cut(s)	107
KasI	GGCGCC	1 cut(s)	106
KpnI	GGTACC	1 cut(s)	104
KroI	GCCGGC	1 cut(s)	109
KroNI	GCCGGC	1 cut(s)	111
Kzo9I	GATC	1 cut(s)	366
LmnI	GCTCC	1 cut(s)	118
Lsp1109I	GCAGC	1 cut(s)	25
MaeI	CTAG	1 cut(s)	350
MaeIII	GTNAC	3 cut(s)	49, 65, 211
MalI	GATC	1 cut(s)	368
MboI	GATC	1 cut(s)	366
MboII	GAAGA	2 cut(s)	312, 664
MhlI	GDGCHC	2 cut(s)	349, 595
MlsI	TGGCCA	3 cut(s)	191, 375, 440
MluCI	AATT	3 cut(s)	229, 485, 501
MluNI	TGGCCA	3 cut(s)	191, 375, 440
Mly113I	GGCGCC	1 cut(s)	107
MlyI	GAGTC	1 cut(s)	460
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	5 cut(s)	30, 33, 114, 147, 697
Mox20I	TGGCCA	3 cut(s)	191, 375, 440
MroNI	GCCGGC	1 cut(s)	109
MscI	TGGCCA	3 cut(s)	191, 375, 440
Msp20I	TGGCCA	3 cut(s)	191, 375, 440
MspI	CCGG	5 cut(s)	83, 98, 104, 110, 116
MspR9I	CCNGG	1 cut(s)	83
Mva1269I	GAATGC	1 cut(s)	468
MwoI	GCNNNNNNNGC	2 cut(s)	590, 625
NaeI	GCCGGC	1 cut(s)	111
NarI	GGCGCC	1 cut(s)	107
NciI	CCSGG	1 cut(s)	83
NcoI	CCATGG	1 cut(s)	370
NdeII	GATC	1 cut(s)	366
NgoMIV	GCCGGC	1 cut(s)	109
NlaIII	CATG	7 cut(s)	76, 220, 374, 390, 419, 619, 682
NlaIV	GGNNCC	5 cut(s)	102, 108, 114, 174, 315
NmuCI	GTSAC	3 cut(s)	49, 65, 211
NspI	RCATGY	3 cut(s)	419, 619, 682
PaeI	GCATGC	1 cut(s)	619
PciI	ACATGT	1 cut(s)	678
PctI	GAATGC	1 cut(s)	468
PdiI	GCCGGC	1 cut(s)	111
PflMI	CCANNNNNTGG	1 cut(s)	436
PkrI	GCNGC	1 cut(s)	15
PleI	GAGTC	1 cut(s)	459
PluTI	GGCGCC	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	459
PpuMI	RGGWCCY	1 cut(s)	123
PscI	ACATGT	1 cut(s)	678
Psp5II	RGGWCCY	1 cut(s)	123
PspEI	GGTNACC	1 cut(s)	211
PspN4I	GGNNCC	5 cut(s)	102, 108, 114, 174, 315
PspPI	GGNCC	4 cut(s)	76, 88, 123, 314
PspPPI	RGGWCCY	1 cut(s)	123
RsaI	GTAC	1 cut(s)	102
RsaNI	GTAC	1 cut(s)	101
SatI	GCNGC	1 cut(s)	14
Sau3AI	GATC	1 cut(s)	366
Sau96I	GGNCC	4 cut(s)	76, 88, 123, 314
SchI	GAGTC	1 cut(s)	460
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	2 cut(s)	349, 595
SetI	ASST	7 cut(s)	22, 48, 128, 158, 266, 553, 630
SfcI	CTRYAG	1 cut(s)	139
SfoI	GGCGCC	1 cut(s)	108
SinI	GGWCC	3 cut(s)	76, 123, 314
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
SphI	GCATGC	1 cut(s)	619
Sse9I	AATT	3 cut(s)	229, 485, 501
SsiI	CCGC	4 cut(s)	61, 86, 391, 534
SspDI	GGCGCC	1 cut(s)	106
SspMI	CTAG	1 cut(s)	350
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	2 cut(s)	370, 726
TaaI	ACNGT	1 cut(s)	566
TasI	AATT	3 cut(s)	229, 485, 501
TscAI	CASTG	1 cut(s)	668
TseFI	GTSAC	3 cut(s)	49, 65, 211
TseI	GCWGC	1 cut(s)	13
Tsp45I	GTSAC	3 cut(s)	49, 65, 211
TspDTI	ATGAA	1 cut(s)	312
TspGWI	ACGGA	1 cut(s)	44
TspRI	CASTG	1 cut(s)	668
Van91I	CCANNNNNTGG	1 cut(s)	436
VneI	GTGCAC	1 cut(s)	591
VpaK11BI	GGWCC	3 cut(s)	76, 123, 314
XapI	RAATTY	1 cut(s)	485
XbaI	TCTAGA	1 cut(s)	349
XceI	RCATGY	3 cut(s)	419, 619, 682
XmiI	GTMKAC	1 cut(s)	138
XspI	CTAG	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.