Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002566

Physical Location & Seq

Genomic Coordinates Reverse (-)

9518192 .. 9519192

Gene Structure 1001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1107900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 129 bp

ATGATTGTTGGCCAGATAGGGAATCAGCTGAACTTAACGTGCGTAAGCAATGGTAGAAATGGAACATATTCATTGTCGGATCCCAGCCCCTCCCGGACTCAGCAGCTATGTGCTGATCTTTGCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006928 GO:0008150 GO:0008283 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

43

Amino Acids

4.44

Weight (kDa)

5.71

Isoelectric Point (pI)

18.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29050 AT2G29050
fragaria_vesca	FvH4_3g36420 FvH4_3g36420 FvH4_3g36420 FvH4_3g36420
malus_domestica	MD00G1013900.v1.1 MD00G1178600.v1.1 MD00G1178800.v1.1 MD03G1090500.v1.1 MD11G1100200.v1.1 MD11G1101200.v1.1 MD11G1101800.v1.1 MD11G1102100.v1.1 MD11G1104300.v1.1 MD11G1105000.v1.1 MD11G1106000.v1.1 MD11G1106300.v1.1 MD11G1106700.v1.1 MD11G1106900.v1.1 MD11G1107000.v1.1 MD11G1107900.v1.1 MD11G1261200.v1.1 MD15G1402100.v1.1
prunus_persica	Prupe.6G074600_v2.0.a1
pyrus_communis	pycom03g07200 pycom11g08440
rosa_chinensis	RchiOBHm_Chr5g0065311
rosa_laevigata	RLG00000035780 RLG00000035781 RLG00000035782
rosa_multiflora	Rmu_sc0009942.1_g000006 Rmu_sc0013827.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015870
rosa_rugosa	Rorug05G0371200
rosa_samantha	Rh5AG429000 Rh5BG444300 Rh5CG466500 Rh5DG456600
rosa_wichuraiana	Rw5G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	74, 87
AcoI	YGGCCR	1 cut(s)	10
AluBI	AGCT	2 cut(s)	28, 106
AluI	AGCT	2 cut(s)	28, 106
AlwI	GGATC	2 cut(s)	74, 87
AoxI	GGCC	1 cut(s)	10
ApeKI	GCWGC	1 cut(s)	103
Asp700I	GAANNNNTTC	1 cut(s)	67
AsuC2I	CCSGG	1 cut(s)	94
BalI	TGGCCA	1 cut(s)	12
BamHI	GGATCC	1 cut(s)	79
BbvI	GCAGC	1 cut(s)	115
BcnI	CCSGG	1 cut(s)	94
BisI	GCNGC	1 cut(s)	104
BlsI	GCNGC	1 cut(s)	105
Bme1390I	CCNGG	1 cut(s)	94
BmiI	GGNNCC	1 cut(s)	81
BmrFI	CCNGG	1 cut(s)	94
BpuMI	CCSGG	1 cut(s)	94
Bse3DI	GCAATG	1 cut(s)	55
BseMI	GCAATG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	113
BseXI	GCAGC	1 cut(s)	115
BseYI	CCCAGC	1 cut(s)	83
BshFI	GGCC	1 cut(s)	12
BsiSI	CCGG	1 cut(s)	94
BsnI	GGCC	1 cut(s)	12
Bsp143I	GATC	2 cut(s)	79, 115
BspANI	GGCC	1 cut(s)	12
BspCNI	CTCAG	1 cut(s)	112
BspLI	GGNNCC	1 cut(s)	81
BspPI	GGATC	2 cut(s)	74, 87
BsrDI	GCAATG	1 cut(s)	55
BssMI	GATC	2 cut(s)	79, 115
BstDEI	CTNAG	1 cut(s)	99
BstKTI	GATC	2 cut(s)	82, 118
BstMBI	GATC	2 cut(s)	79, 115
BstSCI	CCNGG	1 cut(s)	92
BstV1I	GCAGC	1 cut(s)	115
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	12
CviJI	RGCY	4 cut(s)	12, 28, 87, 106
CviKI_1	RGCY	4 cut(s)	12, 28, 87, 106
DdeI	CTNAG	1 cut(s)	99
DpnI	GATC	2 cut(s)	81, 117
DpnII	GATC	2 cut(s)	79, 115
EaeI	YGGCCR	1 cut(s)	10
FaiI	YATR	2 cut(s)	67, 109
Fnu4HI	GCNGC	1 cut(s)	104
Fsp4HI	GCNGC	1 cut(s)	104
GluI	GCNGC	1 cut(s)	104
GsaI	CCCAGC	1 cut(s)	87
HaeIII	GGCC	1 cut(s)	12
HapII	CCGG	1 cut(s)	94
HinfI	GANTC	2 cut(s)	22, 97
HpaII	CCGG	1 cut(s)	94
Hpy188I	TCNGA	1 cut(s)	79
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	1 cut(s)	123
HpyF3I	CTNAG	1 cut(s)	99
HpySE526I	ACGT	1 cut(s)	38
Kzo9I	GATC	2 cut(s)	79, 115
LpnPI	CCDG	3 cut(s)	26, 97, 107
Lsp1109I	GCAGC	1 cut(s)	115
MaeII	ACGT	1 cut(s)	38
MalI	GATC	2 cut(s)	81, 117
MboI	GATC	2 cut(s)	79, 115
MflI	RGATCY	1 cut(s)	79
MlsI	TGGCCA	1 cut(s)	12
MluNI	TGGCCA	1 cut(s)	12
MlyI	GAGTC	1 cut(s)	91
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	1 cut(s)	100
Mox20I	TGGCCA	1 cut(s)	12
MroXI	GAANNNNTTC	1 cut(s)	67
MscI	TGGCCA	1 cut(s)	12
MseI	TTAA	1 cut(s)	35
Msp20I	TGGCCA	1 cut(s)	12
MspA1I	CMGCKG	1 cut(s)	28
MspI	CCGG	1 cut(s)	94
MspR9I	CCNGG	1 cut(s)	94
NciI	CCSGG	1 cut(s)	94
NdeII	GATC	2 cut(s)	79, 115
NlaIV	GGNNCC	1 cut(s)	81
PdmI	GAANNNNTTC	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	22
PfoI	TCCNGGA	1 cut(s)	92
PkrI	GCNGC	1 cut(s)	105
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PspFI	CCCAGC	1 cut(s)	83
PspN4I	GGNNCC	1 cut(s)	81
PsuI	RGATCY	1 cut(s)	79
PvuII	CAGCTG	1 cut(s)	28
SaqAI	TTAA	1 cut(s)	35
SatI	GCNGC	1 cut(s)	104
Sau3AI	GATC	2 cut(s)	79, 115
SchI	GAGTC	1 cut(s)	91
ScrFI	CCNGG	1 cut(s)	94
SetI	ASST	3 cut(s)	30, 41, 108
SgeI	CNNG	5 cut(s)	25, 51, 96, 105, 106
StyD4I	CCNGG	1 cut(s)	92
TaiI	ACGT	1 cut(s)	41
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TseI	GCWGC	1 cut(s)	103
TspDTI	ATGAA	1 cut(s)	60
XmnI	GAANNNNTTC	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.