Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002566

Physical Location & Seq

Genomic Coordinates Reverse (-)

9409486 .. 9412121

Gene Structure 2636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1106300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGATGAGGAGGGTTGGATGGTTAGAAAAGATGGGTGCTGTAGACGTGCAGAGAGTGGGAGTGGTTCATGAACACCAGGGATGGCGGCTGATCTCATGTATGTGGTTACATGCTGGAGTTTTCCATGTGCTTGCCAATATGCTGATTCGAATTGGTTTCCTATATCTCACGTCTGGTTTTGGTGGGAGTTTGCTTTCAGCTCTTTTAATTCAATATGGTACTTCTGTTGGTGCTTCTGGTGCACTTTTTGGTTTACTCGGAAGCATGCTTTCAGAGCTCATATCAAATTGGACAATATTTCTTCTTGGATTTTTGTTTTTGATCCACCCCCTGTTTAAATGGCTTACCCATCGGAATGCTCCCCCTGGACGTGTTAGTACTCTAGTTAAATCTAAACACAATACGTATCAATATGTATTGTGGGTCCTCTCTTTGATACTATTGATTGTTGGAATGGTTTGGAGAAGGCATTGTGTTTTCGTTATCGCTGTTCTCTGTGTGGTATACTCTTTTTTGAGCGGTCAATCTAAACAATCATTGTTCCTGGGGTCATTATTTGAGCAGTGTCCCTACGTTAAAAATGGAATTGCAAGTCCCAAAATATTTATTGTTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006928 GO:0008150 GO:0008283 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

206

Amino Acids

23.06

Weight (kDa)

9.97

Isoelectric Point (pI)

28.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	25 - 49	7.6e-06	Rhomboid domain
Rhomboid	PF01694	49 - 106	3.6e-09	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29050 AT2G29050
fragaria_vesca	FvH4_3g36420 FvH4_3g36420 FvH4_3g36420 FvH4_3g36420
malus_domestica	MD00G1013900.v1.1 MD00G1178600.v1.1 MD00G1178800.v1.1 MD03G1090500.v1.1 MD11G1100200.v1.1 MD11G1101200.v1.1 MD11G1101800.v1.1 MD11G1102100.v1.1 MD11G1104300.v1.1 MD11G1105000.v1.1 MD11G1106000.v1.1 MD11G1106300.v1.1 MD11G1106700.v1.1 MD11G1106900.v1.1 MD11G1107000.v1.1 MD11G1107900.v1.1 MD11G1261200.v1.1 MD15G1402100.v1.1
prunus_persica	Prupe.6G074600_v2.0.a1
pyrus_communis	pycom03g07200 pycom11g08440
rosa_chinensis	RchiOBHm_Chr5g0065311
rosa_laevigata	RLG00000035780 RLG00000035781 RLG00000035782
rosa_multiflora	Rmu_sc0009942.1_g000006 Rmu_sc0013827.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015870
rosa_rugosa	Rorug05G0371200
rosa_samantha	Rh5AG429000 Rh5BG444300 Rh5CG466500 Rh5DG456600
rosa_wichuraiana	Rw5G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	519
AccI	GTMKAC	2 cut(s)	42, 504
AciI	CCGC	2 cut(s)	85, 519
AclWI	GGATC	1 cut(s)	316
AfaI	GTAC	2 cut(s)	220, 379
AflIII	ACRYGT	1 cut(s)	370
AgsI	TTSAA	1 cut(s)	212
AjiI	CACGTC	3 cut(s)	46, 171, 371
AjnI	CCWGG	3 cut(s)	75, 364, 543
AluBI	AGCT	2 cut(s)	200, 277
AluI	AGCT	2 cut(s)	200, 277
Alw21I	GWGCWC	2 cut(s)	244, 279
Alw44I	GTGCAC	1 cut(s)	240
AlwI	GGATC	1 cut(s)	316
ApaLI	GTGCAC	1 cut(s)	240
AspS9I	GGNCC	1 cut(s)	424
AsuII	TTCGAA	1 cut(s)	148
AvaII	GGWCC	1 cut(s)	424
BaeGI	GKGCMC	1 cut(s)	244
BaeI	ACNNNNGTAYC	2 cut(s)	210, 243
BanII	GRGCYC	1 cut(s)	279
Bbv12I	GWGCWC	2 cut(s)	244, 279
BccI	CCATC	4 cut(s)	12, 25, 75, 357
BciT130I	CCWGG	3 cut(s)	77, 366, 545
BfaI	CTAG	1 cut(s)	383
BfmI	CTRYAG	1 cut(s)	39
BisI	GCNGC	1 cut(s)	86
BlsI	GCNGC	1 cut(s)	87
BmcAI	AGTACT	1 cut(s)	379
Bme1390I	CCNGG	3 cut(s)	77, 366, 545
Bme18I	GGWCC	1 cut(s)	424
BmgBI	CACGTC	3 cut(s)	46, 171, 371
BmgT120I	GGNCC	1 cut(s)	424
BmiI	GGNNCC	1 cut(s)	425
BmrFI	CCNGG	3 cut(s)	77, 366, 545
BpmI	CTGGAG	1 cut(s)	135
Bpu14I	TTCGAA	1 cut(s)	148
BsaAI	YACGTR	1 cut(s)	405
BsaJI	CCNNGG	3 cut(s)	76, 364, 544
BseBI	CCWGG	3 cut(s)	77, 366, 545
BseDI	CCNNGG	3 cut(s)	76, 364, 544
BseGI	GGATG	2 cut(s)	23, 86
BseRI	GAGGAG	1 cut(s)	22
BseSI	GKGCMC	1 cut(s)	244
BsgI	GTGCAG	1 cut(s)	68
BsiHKAI	GWGCWC	2 cut(s)	244, 279
BslFI	GGGAC	2 cut(s)	552, 579
BsmFI	GGGAC	2 cut(s)	552, 579
BsmI	GAATGC	1 cut(s)	361
Bsp119I	TTCGAA	1 cut(s)	148
Bsp1286I	GDGCHC	2 cut(s)	244, 279
Bsp143I	GATC	2 cut(s)	90, 321
BspACI	CCGC	2 cut(s)	85, 519
BspHI	TCATGA	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	425
BspPI	GGATC	1 cut(s)	316
BspT104I	TTCGAA	1 cut(s)	148
BsrBI	CCGCTC	1 cut(s)	519
BssECI	CCNNGG	3 cut(s)	76, 364, 544
BssMI	GATC	2 cut(s)	90, 321
BssNAI	GTATAC	1 cut(s)	505
Bst1107I	GTATAC	1 cut(s)	505
Bst2UI	CCWGG	3 cut(s)	77, 366, 545
BstBAI	YACGTR	1 cut(s)	405
BstBI	TTCGAA	1 cut(s)	148
BstC8I	GCNNGC	2 cut(s)	132, 266
BstF5I	GGATG	2 cut(s)	23, 86
BstKTI	GATC	2 cut(s)	93, 324
BstMBI	GATC	2 cut(s)	90, 321
BstMWI	GCNNNNNNNGC	2 cut(s)	239, 274
BstNI	CCWGG	3 cut(s)	77, 366, 545
BstNSI	RCATGY	2 cut(s)	113, 268
BstSCI	CCNGG	3 cut(s)	75, 364, 543
BstSFI	CTRYAG	1 cut(s)	39
BstSLI	GKGCMC	1 cut(s)	244
BstSNI	TACGTA	1 cut(s)	405
BstZ17I	GTATAC	1 cut(s)	505
BtrI	CACGTC	3 cut(s)	46, 171, 371
BtsCI	GGATG	2 cut(s)	23, 86
BtsI	GCAGTG	1 cut(s)	569
BtsIMutI	CAGTG	1 cut(s)	569
Cac8I	GCNNGC	2 cut(s)	132, 266
CciI	TCATGA	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	424
Csp6I	GTAC	2 cut(s)	219, 378
CviAII	CATG	5 cut(s)	68, 96, 110, 125, 265
CviJI	RGCY	4 cut(s)	88, 200, 277, 343
CviKI_1	RGCY	4 cut(s)	88, 200, 277, 343
CviQI	GTAC	2 cut(s)	219, 378
DpnI	GATC	2 cut(s)	92, 323
DpnII	GATC	2 cut(s)	90, 321
DraI	TTTAAA	1 cut(s)	337
Ecl136II	GAGCTC	1 cut(s)	277
Eco105I	TACGTA	1 cut(s)	405
Eco24I	GRGCYC	1 cut(s)	279
Eco47I	GGWCC	1 cut(s)	424
Eco53kI	GAGCTC	1 cut(s)	277
EcoICRI	GAGCTC	1 cut(s)	277
EcoO109I	RGGNCCY	1 cut(s)	424
EcoRII	CCWGG	3 cut(s)	75, 364, 543
EcoT38I	GRGCYC	1 cut(s)	279
FaeI	CATG	5 cut(s)	71, 99, 113, 128, 268
FaqI	GGGAC	2 cut(s)	552, 579
FatI	CATG	5 cut(s)	67, 95, 109, 124, 264
FblI	GTMKAC	2 cut(s)	42, 504
Fnu4HI	GCNGC	1 cut(s)	86
FokI	GGATG	2 cut(s)	30, 93
FriOI	GRGCYC	1 cut(s)	279
Fsp4HI	GCNGC	1 cut(s)	86
FspBI	CTAG	1 cut(s)	383
GluI	GCNGC	1 cut(s)	86
GsuI	CTGGAG	1 cut(s)	135
Hin1II	CATG	5 cut(s)	71, 99, 113, 128, 268
HinfI	GANTC	1 cut(s)	145
Hpy166II	GTNNAC	4 cut(s)	43, 242, 254, 505
Hpy188I	TCNGA	3 cut(s)	260, 274, 354
Hpy188III	TCNNGA	1 cut(s)	68
Hpy8I	GTNNAC	4 cut(s)	43, 242, 254, 505
HpyAV	CCTTC	1 cut(s)	459
HpyCH4IV	ACGT	5 cut(s)	45, 170, 370, 404, 573
HpyCH4V	TGCA	3 cut(s)	49, 242, 590
HpyF10VI	GCNNNNNNNGC	2 cut(s)	239, 274
HpySE526I	ACGT	5 cut(s)	45, 170, 370, 404, 573
Hsp92II	CATG	5 cut(s)	71, 99, 113, 128, 268
Kzo9I	GATC	2 cut(s)	90, 321
LmnI	GCTCC	1 cut(s)	364
MaeI	CTAG	1 cut(s)	383
MaeII	ACGT	5 cut(s)	45, 170, 370, 404, 573
MaeIII	GTNAC	1 cut(s)	105
MalI	GATC	2 cut(s)	92, 323
MbiI	CCGCTC	1 cut(s)	519
MboI	GATC	2 cut(s)	90, 321
MboII	GAAGA	1 cut(s)	293
MhlI	GDGCHC	2 cut(s)	244, 279
MluCI	AATT	4 cut(s)	150, 207, 286, 585
MmeI	TCCRAC	1 cut(s)	430
MnlI	CCTC	2 cut(s)	3, 437
MseI	TTAA	4 cut(s)	206, 336, 387, 576
MslI	CAYNNNNRTG	2 cut(s)	100, 354
MspR9I	CCNGG	3 cut(s)	77, 366, 545
Mva1269I	GAATGC	1 cut(s)	361
MvaI	CCWGG	3 cut(s)	77, 366, 545
MwoI	GCNNNNNNNGC	2 cut(s)	239, 274
NdeII	GATC	2 cut(s)	90, 321
NlaIII	CATG	5 cut(s)	71, 99, 113, 128, 268
NlaIV	GGNNCC	1 cut(s)	425
NspI	RCATGY	2 cut(s)	113, 268
NspV	TTCGAA	1 cut(s)	148
PaeI	GCATGC	1 cut(s)	268
PagI	TCATGA	1 cut(s)	67
PctI	GAATGC	1 cut(s)	361
PfeI	GAWTC	1 cut(s)	145
PkrI	GCNGC	1 cut(s)	87
Ppu21I	YACGTR	1 cut(s)	405
PpuMI	RGGWCCY	1 cut(s)	424
Psp124BI	GAGCTC	1 cut(s)	279
Psp5II	RGGWCCY	1 cut(s)	424
Psp6I	CCWGG	3 cut(s)	75, 364, 543
PspGI	CCWGG	3 cut(s)	75, 364, 543
PspN4I	GGNNCC	1 cut(s)	425
PspPI	GGNCC	1 cut(s)	424
PspPPI	RGGWCCY	1 cut(s)	424
RsaI	GTAC	2 cut(s)	220, 379
RsaNI	GTAC	2 cut(s)	219, 378
RseI	CAYNNNNRTG	2 cut(s)	100, 354
SacI	GAGCTC	1 cut(s)	279
SaqAI	TTAA	4 cut(s)	206, 336, 387, 576
SatI	GCNGC	1 cut(s)	86
Sau3AI	GATC	2 cut(s)	90, 321
Sau96I	GGNCC	1 cut(s)	424
ScaI	AGTACT	1 cut(s)	379
ScrFI	CCNGG	3 cut(s)	77, 366, 545
SduI	GDGCHC	2 cut(s)	244, 279
SetI	ASST	7 cut(s)	48, 173, 202, 279, 373, 407, 576
SfcI	CTRYAG	1 cut(s)	39
SfuI	TTCGAA	1 cut(s)	148
SinI	GGWCC	1 cut(s)	424
SmiMI	CAYNNNNRTG	2 cut(s)	100, 354
SnaBI	TACGTA	1 cut(s)	405
SphI	GCATGC	1 cut(s)	268
Sse9I	AATT	4 cut(s)	150, 207, 286, 585
SsiI	CCGC	2 cut(s)	85, 519
SspI	AATATT	2 cut(s)	297, 603
SspMI	CTAG	1 cut(s)	383
SstI	GAGCTC	1 cut(s)	279
StyD4I	CCNGG	3 cut(s)	75, 364, 543
TaiI	ACGT	5 cut(s)	48, 173, 373, 407, 576
TaqI	TCGA	1 cut(s)	148
TasI	AATT	4 cut(s)	150, 207, 286, 585
TatI	WGTACW	1 cut(s)	377
TauI	GCSGC	1 cut(s)	88
TfiI	GAWTC	1 cut(s)	145
Tru1I	TTAA	4 cut(s)	206, 336, 387, 576
Tru9I	TTAA	4 cut(s)	206, 336, 387, 576
TscAI	CASTG	1 cut(s)	569
TspDTI	ATGAA	2 cut(s)	56, 84
TspRI	CASTG	1 cut(s)	569
VneI	GTGCAC	1 cut(s)	240
VpaK11BI	GGWCC	1 cut(s)	424
XceI	RCATGY	2 cut(s)	113, 268
XmiI	GTMKAC	2 cut(s)	42, 504
XspI	CTAG	1 cut(s)	383
ZrmI	AGTACT	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.