Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0002566

Physical Location & Seq

Genomic Coordinates Reverse (-)

1737246 .. 1740577

Gene Structure 3332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1013900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGACACGTGGTGGGTTGAAAATTTCAACGTCTCTCCTTTCGGCTCTTCAAGGAAAACCCACTTGTTGGGCCTTCTTCAACCACTTTTGTATTGAAATTTGTGTTTTGGGATTTGTTGGGTGCTCGCATGTGGAAATTTGGAAAAATTTAGTTGTGGATTGTGGGGAACTGATGCAGTGGCGGTCCCATTTCATGTTAGAAAAGATGGGTAATCTAGACGCGCAGAGAGTGGTTCATCAACACCAGGGATGGCGGCTGATCTCATTTCAAATTGGTTTCCTATATCTCATGTCTGGTTTTGGTGGGAGTTTGCTTTCAGCTCTTTTTATTCAATATGGTATTTCTGTTGGTGCTTCTGGTGCACTTTTTGGTTTACTAGGAAGCATGCTTTCAGAGCTCACATCAAATTGGACAATGTATGTAAATAAGTTAGCAGCATTGCTTACTCTCCTTTTCATCATCATAATAAACTTAGCAGTGGGAATTCTACCACACGTGGACAACTTTGCTCATATTGGAGGATTTGTCTCCGGATTTCTTCTTGGATTTTTGTTTTTGATCCACCCCCAGTTTAAATGGCTTACCCAACGGAATGCTCCCCCTGGACATGTTACTACTCCAGTTAAATCTAAACACAAAACGTATCAATATGTATTGTGGGTCCTCTCTTTGATACTATTGATTGTTGGCATGGTTTGGAGAAGGCATTGTGTTATCGCTATTCTCTGTTATCAGTATATGCAGGCATTTTCTGACAGAAGTCATGTTTTTGACAGGTATAAGCTTGGCTTGGTTACTCTTTTTCAAGGGGTCAATCTAAACAACCACTGTTCCTGGTGTCATTATTTGAGCTGTGTCCCTACATCAAAATGGAATTGCAATGTTCTTTATATATGCATATATGCACCAATCTTTCAGTCGAGCCAGAGAGGGAATCAGCTGTACTTAACGTGCGTAAGCAATGGTAGAAATGGAACATATTCATTGTCGGATTCCAGCCCCTCCCGGACTCAGCAGCTATGTGCTAAGCTTTGCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006928 GO:0008150 GO:0008283 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

347

Amino Acids

38.94

Weight (kDa)

9.16

Isoelectric Point (pI)

31.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	88 - 186	6.9e-23	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29050 AT2G29050
fragaria_vesca	FvH4_3g36420 FvH4_3g36420 FvH4_3g36420 FvH4_3g36420
malus_domestica	MD00G1013900.v1.1 MD00G1178600.v1.1 MD00G1178800.v1.1 MD03G1090500.v1.1 MD11G1100200.v1.1 MD11G1101200.v1.1 MD11G1101800.v1.1 MD11G1102100.v1.1 MD11G1104300.v1.1 MD11G1105000.v1.1 MD11G1106000.v1.1 MD11G1106300.v1.1 MD11G1106700.v1.1 MD11G1106900.v1.1 MD11G1107000.v1.1 MD11G1107900.v1.1 MD11G1261200.v1.1 MD15G1402100.v1.1
prunus_persica	Prupe.6G074600_v2.0.a1
pyrus_communis	pycom03g07200 pycom11g08440
rosa_chinensis	RchiOBHm_Chr5g0065311
rosa_laevigata	RLG00000035780 RLG00000035781 RLG00000035782
rosa_multiflora	Rmu_sc0009942.1_g000006 Rmu_sc0013827.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015870
rosa_rugosa	Rorug05G0371200
rosa_samantha	Rh5AG429000 Rh5BG444300 Rh5CG466500 Rh5DG456600
rosa_wichuraiana	Rw5G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	66
AccII	CGCG	1 cut(s)	221
AccIII	TCCGGA	1 cut(s)	530
AciI	CCGC	2 cut(s)	181, 253
AclWI	GGATC	1 cut(s)	553
AcsI	RAATTY	5 cut(s)	21, 96, 135, 145, 483
AcvI	CACGTG	2 cut(s)	8, 496
AdeI	CACNNNGTG	1 cut(s)	11
AfaI	GTAC	1 cut(s)	944
AfiI	CCNNNNNNNGG	1 cut(s)	66
AflIII	ACRYGT	3 cut(s)	5, 493, 607
AgsI	TTSAA	8 cut(s)	19, 27, 50, 79, 95, 269, 332, 806
AjnI	CCWGG	3 cut(s)	243, 601, 833
AluBI	AGCT	7 cut(s)	320, 397, 784, 852, 940, 1018, 1030
AluI	AGCT	7 cut(s)	320, 397, 784, 852, 940, 1018, 1030
Alw21I	GWGCWC	3 cut(s)	125, 364, 399
Alw26I	GTCTC	2 cut(s)	36, 532
Alw44I	GTGCAC	1 cut(s)	360
AlwI	GGATC	1 cut(s)	553
Aor13HI	TCCGGA	1 cut(s)	530
AoxI	GGCC	1 cut(s)	69
ApaLI	GTGCAC	1 cut(s)	360
ApeKI	GCWGC	2 cut(s)	434, 1015
ApoI	RAATTY	5 cut(s)	21, 96, 135, 145, 483
Asp700I	GAANNNNTTC	1 cut(s)	979
AspLEI	GCGC	1 cut(s)	223
AspS9I	GGNCC	3 cut(s)	69, 183, 661
AsuC2I	CCSGG	1 cut(s)	1006
AvaII	GGWCC	2 cut(s)	183, 661
BaeGI	GKGCMC	1 cut(s)	364
BanII	GRGCYC	1 cut(s)	399
BbrPI	CACGTG	2 cut(s)	8, 496
Bbv12I	GWGCWC	3 cut(s)	125, 364, 399
BbvI	GCAGC	2 cut(s)	446, 1027
BccI	CCATC	2 cut(s)	199, 243
BciT130I	CCWGG	3 cut(s)	245, 603, 835
BcnI	CCSGG	1 cut(s)	1006
BcoDI	GTCTC	2 cut(s)	36, 532
BfaI	CTAG	2 cut(s)	215, 377
BisI	GCNGC	3 cut(s)	254, 435, 1016
BlpI	GCTNAGC	1 cut(s)	1026
BlsI	GCNGC	3 cut(s)	255, 436, 1017
Bme1390I	CCNGG	4 cut(s)	245, 603, 835, 1006
Bme18I	GGWCC	2 cut(s)	183, 661
BmgT120I	GGNCC	3 cut(s)	69, 183, 661
BmiI	GGNNCC	2 cut(s)	185, 662
BmrFI	CCNGG	4 cut(s)	245, 603, 835, 1006
BmrI	ACTGGG	1 cut(s)	562
BmsI	GCATC	1 cut(s)	162
BmuI	ACTGGG	1 cut(s)	562
BoxI	GACNNNNGTC	1 cut(s)	759
BpmI	CTGGAG	1 cut(s)	603
Bpu1102I	GCTNAGC	1 cut(s)	1026
BpuMI	CCSGG	1 cut(s)	1006
BsaAI	YACGTR	2 cut(s)	8, 496
BsaJI	CCNNGG	2 cut(s)	244, 601
BsaWI	WCCGGW	1 cut(s)	530
BsaXI	ACNNNNNCTCC	2 cut(s)	510, 540
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse1I	ACTGG	2 cut(s)	568, 620
Bse3DI	GCAATG	3 cut(s)	437, 886, 967
BseAI	TCCGGA	1 cut(s)	530
BseBI	CCWGG	3 cut(s)	245, 603, 835
BseDI	CCNNGG	2 cut(s)	244, 601
BseGI	GGATG	1 cut(s)	254
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseMI	GCAATG	3 cut(s)	437, 886, 967
BseMII	CTCAG	1 cut(s)	1025
BseNI	ACTGG	2 cut(s)	568, 620
BseSI	GKGCMC	1 cut(s)	364
BseXI	GCAGC	2 cut(s)	446, 1027
Bsh1236I	CGCG	1 cut(s)	221
BshFI	GGCC	1 cut(s)	71
BsiHKAI	GWGCWC	3 cut(s)	125, 364, 399
BsiSI	CCGG	2 cut(s)	531, 1006
BslFI	GGGAC	2 cut(s)	169, 842
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmAI	GTCTC	2 cut(s)	36, 532
BsmBI	CGTCTC	1 cut(s)	36
BsmFI	GGGAC	2 cut(s)	169, 842
BsmI	GAATGC	1 cut(s)	598
BsnI	GGCC	1 cut(s)	71
Bsp1286I	GDGCHC	3 cut(s)	125, 364, 399
Bsp13I	TCCGGA	1 cut(s)	530
Bsp143I	GATC	2 cut(s)	258, 558
Bsp1720I	GCTNAGC	1 cut(s)	1026
BspACI	CCGC	2 cut(s)	181, 253
BspANI	GGCC	1 cut(s)	71
BspCNI	CTCAG	1 cut(s)	1024
BspEI	TCCGGA	1 cut(s)	530
BspFNI	CGCG	1 cut(s)	221
BspLI	GGNNCC	2 cut(s)	185, 662
BspPI	GGATC	1 cut(s)	553
BspQI	GCTCTTC	1 cut(s)	51
BsrDI	GCAATG	3 cut(s)	437, 886, 967
BsrI	ACTGG	2 cut(s)	568, 620
BssECI	CCNNGG	2 cut(s)	244, 601
BssMI	GATC	2 cut(s)	258, 558
Bst2UI	CCWGG	3 cut(s)	245, 603, 835
Bst4CI	ACNGT	1 cut(s)	830
Bst6I	CTCTTC	1 cut(s)	51
BstBAI	YACGTR	2 cut(s)	8, 496
BstC8I	GCNNGC	3 cut(s)	125, 386, 744
BstDEI	CTNAG	3 cut(s)	472, 1011, 1026
BstF5I	GGATG	1 cut(s)	254
BstFNI	CGCG	1 cut(s)	221
BstHHI	GCGC	1 cut(s)	223
BstKTI	GATC	2 cut(s)	261, 561
BstMAI	GTCTC	2 cut(s)	36, 532
BstMBI	GATC	2 cut(s)	258, 558
BstMWI	GCNNNNNNNGC	2 cut(s)	359, 394
BstNI	CCWGG	3 cut(s)	245, 603, 835
BstNSI	RCATGY	3 cut(s)	131, 388, 611
BstPAI	GACNNNNGTC	1 cut(s)	759
BstSCI	CCNGG	4 cut(s)	243, 601, 833, 1004
BstSLI	GKGCMC	1 cut(s)	364
BstUI	CGCG	1 cut(s)	221
BstV1I	GCAGC	2 cut(s)	446, 1027
BsuRI	GGCC	1 cut(s)	71
BtsCI	GGATG	1 cut(s)	254
BtsI	GCAGTG	2 cut(s)	182, 483
BtsIMutI	CAGTG	3 cut(s)	182, 483, 826
Cac8I	GCNNGC	3 cut(s)	125, 386, 744
CfoI	GCGC	1 cut(s)	223
Cfr13I	GGNCC	3 cut(s)	69, 183, 661
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	943
CviAII	CATG	7 cut(s)	128, 193, 289, 385, 608, 691, 764
CviQI	GTAC	1 cut(s)	943
DdeI	CTNAG	3 cut(s)	472, 1011, 1026
DpnI	GATC	2 cut(s)	260, 560
DpnII	GATC	2 cut(s)	258, 558
DraI	TTTAAA	1 cut(s)	574
DraIII	CACNNNGTG	1 cut(s)	11
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Ecl136II	GAGCTC	1 cut(s)	397
Eco24I	GRGCYC	1 cut(s)	399
Eco47I	GGWCC	2 cut(s)	183, 661
Eco53kI	GAGCTC	1 cut(s)	397
Eco72I	CACGTG	2 cut(s)	8, 496
EcoICRI	GAGCTC	1 cut(s)	397
EcoO109I	RGGNCCY	1 cut(s)	661
EcoRI	GAATTC	1 cut(s)	483
EcoRII	CCWGG	3 cut(s)	243, 601, 833
EcoT22I	ATGCAT	1 cut(s)	899
EcoT38I	GRGCYC	1 cut(s)	399
Esp3I	CGTCTC	1 cut(s)	36
FaeI	CATG	7 cut(s)	131, 196, 292, 388, 611, 694, 767
FalI	AAGNNNNNCTT	2 cut(s)	773, 805
FaqI	GGGAC	2 cut(s)	169, 842
FatI	CATG	7 cut(s)	127, 192, 288, 384, 607, 690, 763
Fnu4HI	GCNGC	3 cut(s)	254, 435, 1016
FokI	GGATG	1 cut(s)	261
FriOI	GRGCYC	1 cut(s)	399
Fsp4HI	GCNGC	3 cut(s)	254, 435, 1016
FspBI	CTAG	2 cut(s)	215, 377
GlaI	GCGC	1 cut(s)	222
GluI	GCNGC	3 cut(s)	254, 435, 1016
GsuI	CTGGAG	1 cut(s)	603
HaeIII	GGCC	1 cut(s)	71
HapII	CCGG	2 cut(s)	531, 1006
HgaI	GACGC	1 cut(s)	227
HhaI	GCGC	1 cut(s)	223
Hin1II	CATG	7 cut(s)	131, 196, 292, 388, 611, 694, 767
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HindIII	AAGCTT	2 cut(s)	782, 1028
HinfI	GANTC	3 cut(s)	934, 992, 1009
HpaII	CCGG	2 cut(s)	531, 1006
Hpy166II	GTNNAC	3 cut(s)	362, 374, 499
Hpy188I	TCNGA	3 cut(s)	394, 754, 991
Hpy188III	TCNNGA	2 cut(s)	215, 531
Hpy8I	GTNNAC	3 cut(s)	362, 374, 499
HpyAV	CCTTC	2 cut(s)	82, 696
HpyCH4III	ACNGT	1 cut(s)	830
HpyCH4IV	ACGT	5 cut(s)	7, 29, 495, 641, 950
HpyCH4V	TGCA	7 cut(s)	175, 362, 742, 879, 897, 905, 1035
HpyF10VI	GCNNNNNNNGC	2 cut(s)	359, 394
HpyF3I	CTNAG	3 cut(s)	472, 1011, 1026
HpySE526I	ACGT	5 cut(s)	7, 29, 495, 641, 950
Hsp92II	CATG	7 cut(s)	131, 196, 292, 388, 611, 694, 767
HspAI	GCGC	1 cut(s)	221
Kpn2I	TCCGGA	1 cut(s)	530
Kzo9I	GATC	2 cut(s)	258, 558
LguI	GCTCTTC	1 cut(s)	51
LmnI	GCTCC	1 cut(s)	601
Lsp1109I	GCAGC	2 cut(s)	446, 1027
LweI	GCATC	1 cut(s)	162
MaeI	CTAG	2 cut(s)	215, 377
MaeII	ACGT	5 cut(s)	7, 29, 495, 641, 950
MaeIII	GTNAC	2 cut(s)	610, 793
MalI	GATC	2 cut(s)	260, 560
MboI	GATC	2 cut(s)	258, 558
MboII	GAAGA	3 cut(s)	38, 67, 530
MhlI	GDGCHC	3 cut(s)	125, 364, 399
MluCI	AATT	8 cut(s)	21, 96, 135, 145, 270, 406, 483, 874
MlyI	GAGTC	1 cut(s)	1003
MmeI	TCCRAC	1 cut(s)	969
MnlI	CCTC	4 cut(s)	512, 674, 923, 1012
Mph1103I	ATGCAT	1 cut(s)	899
MroI	TCCGGA	1 cut(s)	530
MroXI	GAANNNNTTC	1 cut(s)	979
MseI	TTAA	3 cut(s)	573, 624, 947
MslI	CAYNNNNRTG	1 cut(s)	868
MspA1I	CMGCKG	1 cut(s)	940
MspI	CCGG	2 cut(s)	531, 1006
MspR9I	CCNGG	4 cut(s)	245, 603, 835, 1006
Mva1269I	GAATGC	1 cut(s)	598
MvaI	CCWGG	3 cut(s)	245, 603, 835
MvnI	CGCG	1 cut(s)	221
MwoI	GCNNNNNNNGC	2 cut(s)	359, 394
NciI	CCSGG	1 cut(s)	1006
NdeII	GATC	2 cut(s)	258, 558
NlaIII	CATG	7 cut(s)	131, 196, 292, 388, 611, 694, 767
NlaIV	GGNNCC	2 cut(s)	185, 662
NsiI	ATGCAT	1 cut(s)	899
NspI	RCATGY	3 cut(s)	131, 388, 611
PaeI	GCATGC	1 cut(s)	388
PciI	ACATGT	1 cut(s)	607
PciSI	GCTCTTC	1 cut(s)	51
PctI	GAATGC	1 cut(s)	598
PdmI	GAANNNNTTC	1 cut(s)	979
PfeI	GAWTC	2 cut(s)	934, 992
PflMI	CCANNNNNTGG	1 cut(s)	66
PfoI	TCCNGGA	1 cut(s)	1004
PkrI	GCNGC	3 cut(s)	255, 436, 1017
PleI	GAGTC	1 cut(s)	1003
PmaCI	CACGTG	2 cut(s)	8, 496
PmlI	CACGTG	2 cut(s)	8, 496
PpsI	GAGTC	1 cut(s)	1003
Ppu21I	YACGTR	2 cut(s)	8, 496
PpuMI	RGGWCCY	1 cut(s)	661
PscI	ACATGT	1 cut(s)	607
PshAI	GACNNNNGTC	1 cut(s)	759
Psp124BI	GAGCTC	1 cut(s)	399
Psp5II	RGGWCCY	1 cut(s)	661
Psp6I	CCWGG	3 cut(s)	243, 601, 833
PspCI	CACGTG	2 cut(s)	8, 496
PspGI	CCWGG	3 cut(s)	243, 601, 833
PspN4I	GGNNCC	2 cut(s)	185, 662
PspPI	GGNCC	3 cut(s)	69, 183, 661
PspPPI	RGGWCCY	1 cut(s)	661
PvuII	CAGCTG	1 cut(s)	940
RsaI	GTAC	1 cut(s)	944
RsaNI	GTAC	1 cut(s)	943
RseI	CAYNNNNRTG	1 cut(s)	868
SacI	GAGCTC	1 cut(s)	399
SapI	GCTCTTC	1 cut(s)	51
SaqAI	TTAA	3 cut(s)	573, 624, 947
SatI	GCNGC	3 cut(s)	254, 435, 1016
Sau3AI	GATC	2 cut(s)	258, 558
Sau96I	GGNCC	3 cut(s)	69, 183, 661
SchI	GAGTC	1 cut(s)	1003
ScrFI	CCNGG	4 cut(s)	245, 603, 835, 1006
SduI	GDGCHC	3 cut(s)	125, 364, 399
SfaNI	GCATC	1 cut(s)	162
SinI	GGWCC	2 cut(s)	183, 661
SmiMI	CAYNNNNRTG	1 cut(s)	868
SphI	GCATGC	1 cut(s)	388
Sse9I	AATT	8 cut(s)	21, 96, 135, 145, 270, 406, 483, 874
SsiI	CCGC	2 cut(s)	181, 253
SspMI	CTAG	2 cut(s)	215, 377
SstI	GAGCTC	1 cut(s)	399
StyD4I	CCNGG	4 cut(s)	243, 601, 833, 1004
TaaI	ACNGT	1 cut(s)	830
TaiI	ACGT	5 cut(s)	10, 32, 498, 644, 953
TaqI	TCGA	1 cut(s)	920
TasI	AATT	8 cut(s)	21, 96, 135, 145, 270, 406, 483, 874
TatI	WGTACW	1 cut(s)	942
TauI	GCSGC	1 cut(s)	256
TfiI	GAWTC	2 cut(s)	934, 992
Tru1I	TTAA	3 cut(s)	573, 624, 947
Tru9I	TTAA	3 cut(s)	573, 624, 947
TscAI	CASTG	3 cut(s)	182, 483, 833
TseI	GCWGC	2 cut(s)	434, 1015
TspDTI	ATGAA	4 cut(s)	181, 224, 445, 972
TspGWI	ACGGA	1 cut(s)	604
TspRI	CASTG	3 cut(s)	182, 483, 833
Van91I	CCANNNNNTGG	1 cut(s)	66
VneI	GTGCAC	1 cut(s)	360
VpaK11BI	GGWCC	2 cut(s)	183, 661
XapI	RAATTY	5 cut(s)	21, 96, 135, 145, 483
XbaI	TCTAGA	1 cut(s)	214
XceI	RCATGY	3 cut(s)	131, 388, 611
XmnI	GAANNNNTTC	1 cut(s)	979
XspI	CTAG	2 cut(s)	215, 377
Zsp2I	ATGCAT	1 cut(s)	899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.