Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002566

Physical Location & Seq

Genomic Coordinates Reverse (-)

71066626 .. 71070827

Gene Structure 4202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G040270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCGAGACGGCAATCTTCGGCGGAGATAGAGATAAAGGTGGTCACTCCGCAGCGGGGTGACAACGTGGTCCACCCGGAGGGCCCACCTCCGGTACCGTCGCCGGCGCTGTCGAGGACCTTCAGCGACTACAGGCCGTTCAAGAGGTGGAAATCGTGGCTGGTGCCGTGGTTTGTTGTGATCAACATTGTGGTGTTTGTGATCACCATGTTCGTGAATAACTGCCCCAAGAACTCTGATAGATGCATTGCTCGGTTTCTGGGTCGCTTTTCGTTTCAGCCCTTCAAAGAAAACCCACTTCTGGGGCCATCTTCATCCACATTAGACAAGATGGGTGCTCTAGAAGTGCAGAAAATGATCCATGGACGCCACCAGGCATGGCGGTTGCTCTCCTGTATGTGGCTACATGCTGGAGTTTTCCATGTACTGGCCAATATGCTGAGTCTTGTATTTATTGGAATTCGGCTTGAGCAGGAATTTGGGTTTGTCCGAATTGGGTTGGTTTATGTCATCTCTGGTTTTGGCGGGAGTTTGCTCTCAGCACTTTTTATCAAAAATGGTATTTCTGTTGGCGCTTCTGGTGCACTTTTTGGTTTACTAGGAAGCATGCTTTCAGAGCTTATATCAAACTGGACAATATATGCAAACAAGGTAAATAAAGTTACTGATAAGTTAAATGTTGGACCTCTTCTATGTGCACTACCCTTATCTTACTATGTCAGATTTTTATGTGCAGTTAGCGGCATTGCTTACTCTCATTTTCATCATTGTAATAAATTTAGCAGTGGGAATTCTTCCACATGTGGACAACTTTGCTCATATTGGAGGATTTGTTTCTGGATTTCTCCTTGGATTTGTGTTTCTGATCCGCCCCCAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006928 GO:0008150 GO:0008283 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

293

Amino Acids

32.72

Weight (kDa)

9.48

Isoelectric Point (pI)

42.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	124 - 230	8.6e-31	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29050 AT2G29050
fragaria_vesca	FvH4_3g36420 FvH4_3g36420 FvH4_3g36420 FvH4_3g36420
malus_domestica	MD00G1013900.v1.1 MD00G1178600.v1.1 MD00G1178800.v1.1 MD03G1090500.v1.1 MD11G1100200.v1.1 MD11G1101200.v1.1 MD11G1101800.v1.1 MD11G1102100.v1.1 MD11G1104300.v1.1 MD11G1105000.v1.1 MD11G1106000.v1.1 MD11G1106300.v1.1 MD11G1106700.v1.1 MD11G1106900.v1.1 MD11G1107000.v1.1 MD11G1107900.v1.1 MD11G1261200.v1.1 MD15G1402100.v1.1
prunus_persica	Prupe.6G074600_v2.0.a1
pyrus_communis	pycom03g07200 pycom11g08440
rosa_chinensis	RchiOBHm_Chr5g0065311
rosa_laevigata	RLG00000035780 RLG00000035781 RLG00000035782
rosa_multiflora	Rmu_sc0009942.1_g000006 Rmu_sc0013827.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015870
rosa_rugosa	Rorug05G0371200
rosa_samantha	Rh5AG429000 Rh5BG444300 Rh5CG466500 Rh5DG456600
rosa_wichuraiana	Rw5G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	68
Acc65I	GGTACC	1 cut(s)	94
AccB1I	GGYRCC	2 cut(s)	94, 163
AccB7I	CCANNNNNTGG	1 cut(s)	427
AciI	CCGC	7 cut(s)	23, 50, 55, 382, 525, 741, 869
AclWI	GGATC	2 cut(s)	352, 860
AcoI	YGGCCR	1 cut(s)	429
AcsI	RAATTY	4 cut(s)	459, 476, 776, 790
AcuI	CTGAAG	1 cut(s)	106
AcyI	GRCGYC	1 cut(s)	367
AfaI	GTAC	2 cut(s)	96, 426
AfiI	CCNNNNNNNGG	7 cut(s)	56, 79, 91, 301, 302, 399, 427
AflIII	ACRYGT	1 cut(s)	800
AgsI	TTSAA	2 cut(s)	142, 286
AjnI	CCWGG	1 cut(s)	372
AluBI	AGCT	1 cut(s)	619
AluI	AGCT	1 cut(s)	619
Alw21I	GWGCWC	3 cut(s)	340, 586, 700
Alw44I	GTGCAC	2 cut(s)	582, 696
AlwI	GGATC	2 cut(s)	352, 860
AoxI	GGCC	4 cut(s)	82, 134, 305, 429
ApaI	GGGCCC	1 cut(s)	86
ApaLI	GTGCAC	2 cut(s)	582, 696
ApeKI	GCWGC	1 cut(s)	52
ApoI	RAATTY	4 cut(s)	459, 476, 776, 790
Asp718I	GGTACC	1 cut(s)	94
AspLEI	GCGC	2 cut(s)	109, 575
AspS9I	GGNCC	6 cut(s)	70, 82, 83, 117, 305, 683
AsuC2I	CCSGG	1 cut(s)	77
AsuHPI	GGTGA	2 cut(s)	71, 196
AvaII	GGWCC	3 cut(s)	70, 117, 683
BaeGI	GKGCMC	3 cut(s)	86, 586, 700
BalI	TGGCCA	1 cut(s)	431
BanI	GGYRCC	2 cut(s)	94, 163
BanII	GRGCYC	1 cut(s)	86
Bbv12I	GWGCWC	3 cut(s)	340, 586, 700
BbvI	GCAGC	1 cut(s)	64
BccI	CCATC	2 cut(s)	316, 325
BceAI	ACGGC	3 cut(s)	26, 121, 151
BciT130I	CCWGG	1 cut(s)	374
BclI	TGATCA	2 cut(s)	180, 201
BcnI	CCSGG	1 cut(s)	77
BfaI	CTAG	2 cut(s)	341, 599
BfmI	CTRYAG	1 cut(s)	130
BfoI	RGCGCY	2 cut(s)	110, 576
BisI	GCNGC	2 cut(s)	53, 742
BlsI	GCNGC	2 cut(s)	54, 743
Bme1390I	CCNGG	2 cut(s)	77, 374
Bme18I	GGWCC	3 cut(s)	70, 117, 683
BmgT120I	GGNCC	6 cut(s)	70, 82, 83, 117, 305, 683
BmiI	GGNNCC	4 cut(s)	84, 96, 165, 306
BmrFI	CCNGG	2 cut(s)	77, 374
BmrI	ACTGGG	1 cut(s)	869
BmsI	GCATC	1 cut(s)	233
BmuI	ACTGGG	1 cut(s)	869
BpmI	CTGGAG	1 cut(s)	432
BpuEI	CTTGAG	1 cut(s)	488
BpuMI	CCSGG	1 cut(s)	77
BsaHI	GRCGYC	1 cut(s)	367
BsaJI	CCNNGG	3 cut(s)	167, 361, 848
BsaWI	WCCGGW	1 cut(s)	91
BsaXI	ACNNNNNCTCC	2 cut(s)	817, 847
Bsc4I	CCNNNNNNNGG	7 cut(s)	56, 79, 91, 301, 302, 399, 427
Bse118I	RCCGGY	1 cut(s)	103
Bse1I	ACTGG	3 cut(s)	432, 635, 875
Bse3DI	GCAATG	2 cut(s)	246, 744
BseBI	CCWGG	1 cut(s)	374
BseDI	CCNNGG	3 cut(s)	167, 361, 848
BseGI	GGATG	1 cut(s)	314
BseLI	CCNNNNNNNGG	7 cut(s)	56, 79, 91, 301, 302, 399, 427
BseMI	GCAATG	2 cut(s)	246, 744
BseMII	CTCAG	2 cut(s)	431, 552
BseNI	ACTGG	3 cut(s)	432, 635, 875
BseSI	GKGCMC	3 cut(s)	86, 586, 700
BseXI	GCAGC	1 cut(s)	64
BsgI	GTGCAG	2 cut(s)	368, 753
BshFI	GGCC	4 cut(s)	84, 136, 307, 431
BshNI	GGYRCC	2 cut(s)	94, 163
BsiHKAI	GWGCWC	3 cut(s)	340, 586, 700
BsiSI	CCGG	3 cut(s)	77, 92, 104
BslI	CCNNNNNNNGG	7 cut(s)	56, 79, 91, 301, 302, 399, 427
BsnI	GGCC	4 cut(s)	84, 136, 307, 431
Bsp120I	GGGCCC	1 cut(s)	82
Bsp1286I	GDGCHC	4 cut(s)	86, 340, 586, 700
Bsp143I	GATC	4 cut(s)	180, 201, 357, 865
Bsp19I	CCATGG	1 cut(s)	361
BspACI	CCGC	7 cut(s)	23, 50, 55, 382, 525, 741, 869
BspANI	GGCC	4 cut(s)	84, 136, 307, 431
BspCNI	CTCAG	2 cut(s)	432, 551
BspLI	GGNNCC	4 cut(s)	84, 96, 165, 306
BspPI	GGATC	2 cut(s)	352, 860
BspT107I	GGYRCC	2 cut(s)	94, 163
BsrDI	GCAATG	2 cut(s)	246, 744
BsrFI	RCCGGY	1 cut(s)	103
BsrI	ACTGG	3 cut(s)	432, 635, 875
BssAI	RCCGGY	1 cut(s)	103
BssECI	CCNNGG	3 cut(s)	167, 361, 848
BssMI	GATC	4 cut(s)	180, 201, 357, 865
BssNI	GRCGYC	1 cut(s)	367
BssT1I	CCWWGG	2 cut(s)	361, 848
Bst2UI	CCWGG	1 cut(s)	374
Bst4CI	ACNGT	1 cut(s)	99
Bst6I	CTCTTC	1 cut(s)	693
BstACI	GRCGYC	1 cut(s)	367
BstC8I	GCNNGC	2 cut(s)	105, 608
BstDEI	CTNAG	2 cut(s)	440, 538
BstDSI	CCRYGG	2 cut(s)	167, 361
BstF5I	GGATG	1 cut(s)	314
BstH2I	RGCGCY	2 cut(s)	110, 576
BstHHI	GCGC	2 cut(s)	109, 575
BstKTI	GATC	4 cut(s)	183, 204, 360, 868
BstMBI	GATC	4 cut(s)	180, 201, 357, 865
BstMWI	GCNNNNNNNGC	2 cut(s)	581, 616
BstNI	CCWGG	1 cut(s)	374
BstNSI	RCATGY	3 cut(s)	410, 610, 804
BstSCI	CCNGG	2 cut(s)	75, 372
BstSFI	CTRYAG	1 cut(s)	130
BstSLI	GKGCMC	3 cut(s)	86, 586, 700
BstV1I	GCAGC	1 cut(s)	64
BsuRI	GGCC	4 cut(s)	84, 136, 307, 431
BtgI	CCRYGG	2 cut(s)	167, 361
BtsCI	GGATG	1 cut(s)	314
BtsI	GCAGTG	1 cut(s)	790
BtsIMutI	CAGTG	1 cut(s)	790
Cac8I	GCNNGC	2 cut(s)	105, 608
CfoI	GCGC	2 cut(s)	109, 575
Cfr10I	RCCGGY	1 cut(s)	103
Cfr13I	GGNCC	6 cut(s)	70, 82, 83, 117, 305, 683
CseI	GACGC	1 cut(s)	375
Csp6I	GTAC	2 cut(s)	95, 425
CviAII	CATG	7 cut(s)	208, 362, 378, 407, 422, 607, 801
CviJI	RGCY	9 cut(s)	84, 136, 160, 280, 307, 403, 431, 466, 619
CviKI_1	RGCY	9 cut(s)	84, 136, 160, 280, 307, 403, 431, 466, 619
CviQI	GTAC	2 cut(s)	95, 425
DdeI	CTNAG	2 cut(s)	440, 538
DpnI	GATC	4 cut(s)	182, 203, 359, 867
DpnII	GATC	4 cut(s)	180, 201, 357, 865
DrdI	GACNNNNNNGTC	1 cut(s)	68
DseDI	GACNNNNNNGTC	1 cut(s)	68
EaeI	YGGCCR	1 cut(s)	429
Eam1104I	CTCTTC	1 cut(s)	693
EarI	CTCTTC	1 cut(s)	693
EciI	GGCGGA	2 cut(s)	38, 858
Eco130I	CCWWGG	2 cut(s)	361, 848
Eco24I	GRGCYC	1 cut(s)	86
Eco47I	GGWCC	3 cut(s)	70, 117, 683
Eco57I	CTGAAG	1 cut(s)	106
EcoO109I	RGGNCCY	2 cut(s)	82, 117
EcoRI	GAATTC	2 cut(s)	459, 790
EcoRII	CCWGG	1 cut(s)	372
EcoT14I	CCWWGG	2 cut(s)	361, 848
EcoT22I	ATGCAT	1 cut(s)	248
EcoT38I	GRGCYC	1 cut(s)	86
ErhI	CCWWGG	2 cut(s)	361, 848
FaeI	CATG	7 cut(s)	211, 365, 381, 410, 425, 610, 804
FatI	CATG	7 cut(s)	207, 361, 377, 406, 421, 606, 800
FauI	CCCGC	2 cut(s)	48, 518
FbaI	TGATCA	2 cut(s)	180, 201
Fnu4HI	GCNGC	2 cut(s)	53, 742
FokI	GGATG	1 cut(s)	301
FriOI	GRGCYC	1 cut(s)	86
Fsp4HI	GCNGC	2 cut(s)	53, 742
FspBI	CTAG	2 cut(s)	341, 599
GlaI	GCGC	2 cut(s)	108, 574
GluI	GCNGC	2 cut(s)	53, 742
GsuI	CTGGAG	1 cut(s)	432
HaeII	RGCGCY	2 cut(s)	110, 576
HaeIII	GGCC	4 cut(s)	84, 136, 307, 431
HapII	CCGG	3 cut(s)	77, 92, 104
HgaI	GACGC	1 cut(s)	375
HhaI	GCGC	2 cut(s)	109, 575
Hin1I	GRCGYC	1 cut(s)	367
Hin1II	CATG	7 cut(s)	211, 365, 381, 410, 425, 610, 804
Hin6I	GCGC	2 cut(s)	107, 573
HinP1I	GCGC	2 cut(s)	107, 573
HinfI	GANTC	1 cut(s)	442
HpaII	CCGG	3 cut(s)	77, 92, 104
HphI	GGTGA	2 cut(s)	71, 196
Hpy166II	GTNNAC	5 cut(s)	73, 584, 596, 698, 806
Hpy188I	TCNGA	5 cut(s)	238, 491, 616, 722, 865
Hpy188III	TCNNGA	4 cut(s)	142, 214, 341, 838
Hpy8I	GTNNAC	5 cut(s)	73, 584, 596, 698, 806
Hpy99I	CGWCG	1 cut(s)	103
HpyAV	CCTTC	2 cut(s)	130, 292
HpyCH4III	ACNGT	1 cut(s)	99
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	6 cut(s)	246, 349, 584, 644, 698, 734
HpyF10VI	GCNNNNNNNGC	2 cut(s)	581, 616
HpyF3I	CTNAG	2 cut(s)	440, 538
HpySE526I	ACGT	1 cut(s)	66
Hsp92I	GRCGYC	1 cut(s)	367
Hsp92II	CATG	7 cut(s)	211, 365, 381, 410, 425, 610, 804
HspAI	GCGC	2 cut(s)	107, 573
KpnI	GGTACC	1 cut(s)	98
KroI	GCCGGC	1 cut(s)	103
KroNI	GCCGGC	1 cut(s)	105
Ksp22I	TGATCA	2 cut(s)	180, 201
Kzo9I	GATC	4 cut(s)	180, 201, 357, 865
Lsp1109I	GCAGC	1 cut(s)	64
LweI	GCATC	1 cut(s)	233
MaeI	CTAG	2 cut(s)	341, 599
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	3 cut(s)	43, 59, 661
MalI	GATC	4 cut(s)	182, 203, 359, 867
MboI	GATC	4 cut(s)	180, 201, 357, 865
MboII	GAAGA	4 cut(s)	9, 303, 680, 786
MhlI	GDGCHC	4 cut(s)	86, 340, 586, 700
MlsI	TGGCCA	1 cut(s)	431
MluCI	AATT	5 cut(s)	459, 476, 492, 776, 790
MluNI	TGGCCA	1 cut(s)	431
MlyI	GAGTC	1 cut(s)	451
MmeI	TCCRAC	1 cut(s)	661
MnlI	CCTC	6 cut(s)	73, 99, 108, 138, 696, 819
Mox20I	TGGCCA	1 cut(s)	431
Mph1103I	ATGCAT	1 cut(s)	248
MreI	CGCCGGCG	1 cut(s)	103
MroNI	GCCGGC	1 cut(s)	103
MscI	TGGCCA	1 cut(s)	431
MseI	TTAA	1 cut(s)	674
MslI	CAYNNNNRTG	2 cut(s)	191, 212
Msp20I	TGGCCA	1 cut(s)	431
MspA1I	CMGCKG	1 cut(s)	55
MspI	CCGG	3 cut(s)	77, 92, 104
MspR9I	CCNGG	2 cut(s)	77, 374
MvaI	CCWGG	1 cut(s)	374
MwoI	GCNNNNNNNGC	2 cut(s)	581, 616
NaeI	GCCGGC	1 cut(s)	105
NciI	CCSGG	1 cut(s)	77
NcoI	CCATGG	1 cut(s)	361
NdeII	GATC	4 cut(s)	180, 201, 357, 865
NgoMIV	GCCGGC	1 cut(s)	103
NlaIII	CATG	7 cut(s)	211, 365, 381, 410, 425, 610, 804
NlaIV	GGNNCC	4 cut(s)	84, 96, 165, 306
NmuCI	GTSAC	2 cut(s)	43, 59
NsiI	ATGCAT	1 cut(s)	248
NspI	RCATGY	3 cut(s)	410, 610, 804
PaeI	GCATGC	1 cut(s)	610
PciI	ACATGT	1 cut(s)	800
PdiI	GCCGGC	1 cut(s)	105
PflMI	CCANNNNNTGG	1 cut(s)	427
PkrI	GCNGC	2 cut(s)	54, 743
PleI	GAGTC	1 cut(s)	450
PpsI	GAGTC	1 cut(s)	450
PpuMI	RGGWCCY	1 cut(s)	117
PscI	ACATGT	1 cut(s)	800
Psp5II	RGGWCCY	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	372
PspN4I	GGNNCC	4 cut(s)	84, 96, 165, 306
PspOMI	GGGCCC	1 cut(s)	82
PspPI	GGNCC	6 cut(s)	70, 82, 83, 117, 305, 683
PspPPI	RGGWCCY	1 cut(s)	117
RsaI	GTAC	2 cut(s)	96, 426
RsaNI	GTAC	2 cut(s)	95, 425
RseI	CAYNNNNRTG	2 cut(s)	191, 212
SaqAI	TTAA	1 cut(s)	674
SatI	GCNGC	2 cut(s)	53, 742
Sau3AI	GATC	4 cut(s)	180, 201, 357, 865
Sau96I	GGNCC	6 cut(s)	70, 82, 83, 117, 305, 683
SchI	GAGTC	1 cut(s)	451
ScrFI	CCNGG	2 cut(s)	77, 374
SduI	GDGCHC	4 cut(s)	86, 340, 586, 700
SetI	ASST	8 cut(s)	42, 69, 91, 122, 149, 621, 654, 688
SfaNI	GCATC	1 cut(s)	233
SfcI	CTRYAG	1 cut(s)	130
SgrAI	CRCCGGYG	1 cut(s)	103
SinI	GGWCC	3 cut(s)	70, 117, 683
SmiMI	CAYNNNNRTG	2 cut(s)	191, 212
SmlI	CTYRAG	1 cut(s)	467
SmoI	CTYRAG	1 cut(s)	467
SphI	GCATGC	1 cut(s)	610
Sse9I	AATT	5 cut(s)	459, 476, 492, 776, 790
SsiI	CCGC	7 cut(s)	23, 50, 55, 382, 525, 741, 869
SspMI	CTAG	2 cut(s)	341, 599
StyD4I	CCNGG	2 cut(s)	75, 372
StyI	CCWWGG	2 cut(s)	361, 848
TaaI	ACNGT	1 cut(s)	99
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	1 cut(s)	113
TasI	AATT	5 cut(s)	459, 476, 492, 776, 790
TatI	WGTACW	1 cut(s)	424
TauI	GCSGC	1 cut(s)	744
Tru1I	TTAA	1 cut(s)	674
Tru9I	TTAA	1 cut(s)	674
TscAI	CASTG	1 cut(s)	790
TseFI	GTSAC	2 cut(s)	43, 59
TseI	GCWGC	1 cut(s)	52
Tsp45I	GTSAC	2 cut(s)	43, 59
TspDTI	ATGAA	2 cut(s)	303, 752
TspRI	CASTG	1 cut(s)	790
Van91I	CCANNNNNTGG	1 cut(s)	427
VneI	GTGCAC	2 cut(s)	582, 696
VpaK11BI	GGWCC	3 cut(s)	70, 117, 683
XapI	RAATTY	4 cut(s)	459, 476, 776, 790
XbaI	TCTAGA	1 cut(s)	340
XceI	RCATGY	3 cut(s)	410, 610, 804
XspI	CTAG	2 cut(s)	341, 599
Zsp2I	ATGCAT	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.