Prupe.6G074600_v2.0.a1
NAC Family

Inactive rhomboid protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
5092022 .. 5096512
4491 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G074600.1

Sequence Viewer

Length: 1200 bp
ATGATTAAGGAGGAAAAAAAGAAAAAAGGTGAGATTTTTATGGAGAGGGACCAATCTGCTGCGGCGAGCAACTTGGAGATAAAGGTGGTCCGTCCACGGCGGAACGACAACTTGGTGCACCCGGCGGGCCAAGCTCCGAGGACGACGCGAAGGCGGTCGTACAGCAGCAACTACAACCCGTTCAAGAGGTGGGTCTCATGGCTGGTCCCGTCGTTTGTGGTGGCCAACATTGTCGTTTTTGTGGTCACCATGTTTGTGAACGATTGCCCCAAGAACTCGGCCTCTTGCATTGCTCGCTTCTTGGGCCGCCTCTCTTTTCAGCCCCTCAAGGAAAACCCACTTCTTGGGCCATCTTCAGCCACATTAGAAAAGATGGGTGCTCTAGACGTGCAGAGAATGGTTCATAAACACCAGGCATGGCGGATGATCTCATGTATGTGGTTACATGCTGGAGTTTTCCATCTACTGGCCAATATGCTGAGTCTTGTATTCATTGGGATTCGGCTTGAGCAAGAATTTGGATTTGTTCGAATTGGTTTGCTTTATGTCCTGTCTGGTTTTGGTGGGAGTTTGCTTTCATCTCTTTTTATTCAATATGGTATTTCTGTTGGTGCTTCTGGTGCACTTTTTGGTCTACTAGGAAGCATGCTATCAGAGATCATAGCAAATTGGACAATGTATGAAAATAAGTTAGCAGCATTGCTTACTCTCATTGTCATCGTCATAGTAAATTTAGCAGTGGGAATCCTCCCACACGTGGACAACTTTGCTCATATTGGAGGATTTCTTTCTGGATTTCTTCTTGGATTTGTGTTTTTGATCCGCCCCCAATTTAAATGGCTTACCCAAAGGAATGCTCCTCCTGGGCATGTTTCAACTCCAGTTAAATCTAAACACAAGACATATCAATATGTATTGTGGGTTCTCGCTCTGATAATATTGATTGTTGGGTTTACTATTGGCATGGTTACTCTCCTTCGAGGGGTCAATCTGAATGATTACTGTTCCTGGTGTCATTATTTGAGCTGTGTCCCTACCTCAAAATGGAGCTGCAAGTCACAACAAATTTATTGTTTGTCCAGCCAGTTAGGAAATCAGCTGAACTTGACATGCGTAAGCAACGGGAGAAATGGCACTTATTCATTGCTGGATGGCAACCCCACCCGGGCTCAACAGCTATGCGCTGAGCTTTGCAGTTGA

Protein Analysis

400

Amino Acids

44.49

Weight (kDa)

9.65

Isoelectric Point (pI)

38.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 344, 466
AccI GTMKAC 1 cut(s) 634
AccII CGCG 1 cut(s) 148
AciI CCGC 7 cut(s) 62, 100, 125, 154, 307, 421, 823
AclWI GGATC 1 cut(s) 814
AcoI YGGCCR 2 cut(s) 222, 468
AcsI RAATTY 3 cut(s) 515, 730, 1065
AcuI CTGAAG 1 cut(s) 339
AcvI CACGTG 1 cut(s) 757
AfaI GTAC 1 cut(s) 161
AfiI CCNNNNNNNGG 6 cut(s) 344, 466, 757, 982, 1044, 1165
AflIII ACRYGT 1 cut(s) 754
AgsI TTSAA 3 cut(s) 184, 593, 876
AjiI CACGTC 1 cut(s) 388
AjnI CCWGG 3 cut(s) 411, 862, 1007
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
AluBI AGCT 6 cut(s) 134, 1026, 1050, 1099, 1177, 1189
AluI AGCT 6 cut(s) 134, 1026, 1050, 1099, 1177, 1189
Alw21I GWGCWC 3 cut(s) 120, 382, 625
Alw26I GTCTC 1 cut(s) 199
Alw44I GTGCAC 2 cut(s) 116, 621
AlwI GGATC 1 cut(s) 814
Ama87I CYCGRG 1 cut(s) 1164
AoxI GGCC 6 cut(s) 127, 222, 279, 304, 347, 468
ApaLI GTGCAC 2 cut(s) 116, 621
ApeKI GCWGC 4 cut(s) 59, 165, 695, 1050
ApoI RAATTY 3 cut(s) 515, 730, 1065
AspLEI GCGC 1 cut(s) 1184
AspS9I GGNCC 6 cut(s) 49, 88, 127, 205, 304, 347
AsuC2I CCSGG 3 cut(s) 122, 1165, 1166
AsuHPI GGTGA 2 cut(s) 41, 238
AsuII TTCGAA 1 cut(s) 529
AvaI CYCGRG 1 cut(s) 1164
AvaII GGWCC 3 cut(s) 49, 88, 205
BaeGI GKGCMC 2 cut(s) 120, 625
BalI TGGCCA 2 cut(s) 224, 470
BanII GRGCYC 1 cut(s) 1171
BbrPI CACGTG 1 cut(s) 757
Bbv12I GWGCWC 3 cut(s) 120, 382, 625
BbvI GCAGC 4 cut(s) 46, 177, 707, 1037
BccI CCATC 4 cut(s) 358, 367, 468, 1145
BceAI ACGGC 1 cut(s) 113
BciT130I CCWGG 3 cut(s) 413, 864, 1009
BcnI CCSGG 3 cut(s) 122, 1165, 1166
BcoDI GTCTC 1 cut(s) 199
BfaI CTAG 2 cut(s) 383, 638
BisI GCNGC 6 cut(s) 60, 63, 166, 307, 696, 1051
BlpI GCTNAGC 1 cut(s) 1185
BlsI GCNGC 6 cut(s) 61, 64, 167, 308, 697, 1052
Bme1390I CCNGG 6 cut(s) 122, 413, 864, 1009, 1165, 1166
Bme18I GGWCC 3 cut(s) 49, 88, 205
BmeT110I CYCGRG 1 cut(s) 1164
BmgBI CACGTC 1 cut(s) 388
BmgT120I GGNCC 6 cut(s) 49, 88, 127, 205, 304, 347
BmiI GGNNCC 2 cut(s) 50, 207
BmrFI CCNGG 6 cut(s) 122, 413, 864, 1009, 1165, 1166
BpmI CTGGAG 2 cut(s) 471, 864
Bpu1102I GCTNAGC 1 cut(s) 1185
Bpu14I TTCGAA 1 cut(s) 529
BpuEI CTTGAG 2 cut(s) 311, 527
BpuMI CCSGG 3 cut(s) 122, 1165, 1166
BsaAI YACGTR 1 cut(s) 757
BsaI GGTCTC 1 cut(s) 199
BsaJI CCNNGG 4 cut(s) 95, 137, 863, 1164
Bsc4I CCNNNNNNNGG 6 cut(s) 344, 466, 757, 982, 1044, 1165
Bse1I ACTGG 3 cut(s) 471, 881, 1084
Bse3DI GCAATG 3 cut(s) 288, 698, 1142
BseBI CCWGG 3 cut(s) 413, 864, 1009
BseDI CCNNGG 4 cut(s) 95, 137, 863, 1164
BseGI GGATG 2 cut(s) 429, 1156
BseLI CCNNNNNNNGG 6 cut(s) 344, 466, 757, 982, 1044, 1165
BseMI GCAATG 3 cut(s) 288, 698, 1142
BseMII CTCAG 2 cut(s) 470, 1176
BseNI ACTGG 3 cut(s) 471, 881, 1084
BseRI GAGGAG 1 cut(s) 849
BseSI GKGCMC 2 cut(s) 120, 625
BseXI GCAGC 4 cut(s) 46, 177, 707, 1037
BsgI GTGCAG 1 cut(s) 410
Bsh1236I CGCG 1 cut(s) 148
Bsh1285I CGRYCG 1 cut(s) 158
BshFI GGCC 6 cut(s) 129, 224, 281, 306, 349, 470
BsiEI CGRYCG 1 cut(s) 158
BsiHKAI GWGCWC 3 cut(s) 120, 382, 625
BsiHKCI CYCGRG 1 cut(s) 1164
BsiSI CCGG 2 cut(s) 122, 1165
BslFI GGGAC 3 cut(s) 62, 191, 1016
BslI CCNNNNNNNGG 6 cut(s) 344, 466, 757, 982, 1044, 1165
BsmAI GTCTC 1 cut(s) 199
BsmFI GGGAC 3 cut(s) 62, 191, 1016
BsmI GAATGC 1 cut(s) 859
BsnI GGCC 6 cut(s) 129, 224, 281, 306, 349, 470
Bso31I GGTCTC 1 cut(s) 199
BsoBI CYCGRG 1 cut(s) 1164
Bsp119I TTCGAA 1 cut(s) 529
Bsp1286I GDGCHC 4 cut(s) 120, 382, 625, 1171
Bsp143I GATC 3 cut(s) 426, 657, 819
Bsp1720I GCTNAGC 1 cut(s) 1185
BspACI CCGC 7 cut(s) 62, 100, 125, 154, 307, 421, 823
BspANI GGCC 6 cut(s) 129, 224, 281, 306, 349, 470
BspCNI CTCAG 2 cut(s) 471, 1177
BspFNI CGCG 1 cut(s) 148
BspLI GGNNCC 2 cut(s) 50, 207
BspPI GGATC 1 cut(s) 814
BspT104I TTCGAA 1 cut(s) 529
BspTNI GGTCTC 1 cut(s) 199
BsrDI GCAATG 3 cut(s) 288, 698, 1142
BsrI ACTGG 3 cut(s) 471, 881, 1084
BssECI CCNNGG 4 cut(s) 95, 137, 863, 1164
BssMI GATC 3 cut(s) 426, 657, 819
Bst2UI CCWGG 3 cut(s) 413, 864, 1009
Bst4CI ACNGT 1 cut(s) 1004
BstBAI YACGTR 1 cut(s) 757
BstBI TTCGAA 1 cut(s) 529
BstC8I GCNNGC 4 cut(s) 67, 127, 295, 647
BstDEI CTNAG 2 cut(s) 479, 1185
BstDSI CCRYGG 1 cut(s) 95
BstEII GGTNACC 1 cut(s) 244
BstF5I GGATG 2 cut(s) 429, 1156
BstFNI CGCG 1 cut(s) 148
BstHHI GCGC 1 cut(s) 1184
BstKTI GATC 3 cut(s) 429, 660, 822
BstMAI GTCTC 1 cut(s) 199
BstMBI GATC 3 cut(s) 426, 657, 819
BstMCI CGRYCG 1 cut(s) 158
BstMWI GCNNNNNNNGC 4 cut(s) 131, 294, 303, 620
BstNI CCWGG 3 cut(s) 413, 864, 1009
BstNSI RCATGY 4 cut(s) 449, 649, 872, 1113
BstPI GGTNACC 1 cut(s) 244
BstSCI CCNGG 6 cut(s) 120, 411, 862, 1007, 1163, 1164
BstSLI GKGCMC 2 cut(s) 120, 625
BstUI CGCG 1 cut(s) 148
BstV1I GCAGC 4 cut(s) 46, 177, 707, 1037
BsuRI GGCC 6 cut(s) 129, 224, 281, 306, 349, 470
BtgI CCRYGG 1 cut(s) 95
BtrI CACGTC 1 cut(s) 388
BtsCI GGATG 2 cut(s) 429, 1156
BtsI GCAGTG 1 cut(s) 744
BtsIMutI CAGTG 1 cut(s) 744
Cac8I GCNNGC 4 cut(s) 67, 127, 295, 647
CfoI GCGC 1 cut(s) 1184
Cfr13I GGNCC 6 cut(s) 49, 88, 127, 205, 304, 347
Cfr9I CCCGGG 1 cut(s) 1164
CseI GACGC 1 cut(s) 154
Csp6I GTAC 1 cut(s) 160
CviAII CATG 9 cut(s) 198, 250, 417, 432, 446, 646, 869, 964, 1110
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 2 cut(s) 479, 1185
DpnI GATC 3 cut(s) 428, 659, 821
DpnII GATC 3 cut(s) 426, 657, 819
DraI TTTAAA 1 cut(s) 835
EaeI YGGCCR 2 cut(s) 222, 468
EciI GGCGGA 3 cut(s) 115, 436, 812
Eco24I GRGCYC 1 cut(s) 1171
Eco31I GGTCTC 1 cut(s) 199
Eco47I GGWCC 3 cut(s) 49, 88, 205
Eco57I CTGAAG 1 cut(s) 339
Eco72I CACGTG 1 cut(s) 757
Eco88I CYCGRG 1 cut(s) 1164
Eco91I GGTNACC 1 cut(s) 244
EcoO65I GGTNACC 1 cut(s) 244
EcoRII CCWGG 3 cut(s) 411, 862, 1007
EcoT38I GRGCYC 1 cut(s) 1171
FaeI CATG 9 cut(s) 201, 253, 420, 435, 449, 649, 872, 967, 1113
FaqI GGGAC 3 cut(s) 62, 191, 1016
FatI CATG 9 cut(s) 197, 249, 416, 431, 445, 645, 868, 963, 1109
FauI CCCGC 1 cut(s) 118
FblI GTMKAC 1 cut(s) 634
Fnu4HI GCNGC 6 cut(s) 60, 63, 166, 307, 696, 1051
FokI GGATG 2 cut(s) 436, 1163
FriOI GRGCYC 1 cut(s) 1171
Fsp4HI GCNGC 6 cut(s) 60, 63, 166, 307, 696, 1051
FspBI CTAG 2 cut(s) 383, 638
GlaI GCGC 1 cut(s) 1183
GluI GCNGC 6 cut(s) 60, 63, 166, 307, 696, 1051
GsuI CTGGAG 2 cut(s) 471, 864
HaeIII GGCC 6 cut(s) 129, 224, 281, 306, 349, 470
HapII CCGG 2 cut(s) 122, 1165
HgaI GACGC 1 cut(s) 154
HhaI GCGC 1 cut(s) 1184
Hin1II CATG 9 cut(s) 201, 253, 420, 435, 449, 649, 872, 967, 1113
Hin6I GCGC 1 cut(s) 1182
HinP1I GCGC 1 cut(s) 1182
HinfI GANTC 3 cut(s) 481, 499, 744
HpaII CCGG 2 cut(s) 122, 1165
HphI GGTGA 2 cut(s) 41, 238
Hpy166II GTNNAC 7 cut(s) 95, 118, 259, 623, 635, 760, 954
Hpy188I TCNGA 4 cut(s) 138, 655, 933, 993
Hpy188III TCNNGA 3 cut(s) 184, 383, 792
Hpy8I GTNNAC 7 cut(s) 95, 118, 259, 623, 635, 760, 954
Hpy99I CGWCG 2 cut(s) 148, 214
HpyAV CCTTC 2 cut(s) 144, 986
HpyCH4III ACNGT 1 cut(s) 1004
HpyCH4IV ACGT 2 cut(s) 387, 756
HpyCH4V TGCA 6 cut(s) 118, 288, 391, 623, 1053, 1194
HpyF10VI GCNNNNNNNGC 4 cut(s) 131, 294, 303, 620
HpyF3I CTNAG 2 cut(s) 479, 1185
HpySE526I ACGT 2 cut(s) 387, 756
Hsp92II CATG 9 cut(s) 201, 253, 420, 435, 449, 649, 872, 967, 1113
HspAI GCGC 1 cut(s) 1182
Kzo9I GATC 3 cut(s) 426, 657, 819
LmnI GCTCC 3 cut(s) 139, 862, 1047
Lsp1109I GCAGC 4 cut(s) 46, 177, 707, 1037
MaeI CTAG 2 cut(s) 383, 638
MaeII ACGT 2 cut(s) 387, 756
MaeIII GTNAC 4 cut(s) 244, 441, 967, 1056
MalI GATC 3 cut(s) 428, 659, 821
MboI GATC 3 cut(s) 426, 657, 819
MboII GAAGA 2 cut(s) 345, 791
MhlI GDGCHC 4 cut(s) 120, 382, 625, 1171
MlsI TGGCCA 2 cut(s) 224, 470
MluCI AATT 6 cut(s) 515, 531, 667, 730, 830, 1065
MluNI TGGCCA 2 cut(s) 224, 470
MlyI GAGTC 1 cut(s) 490
Mox20I TGGCCA 2 cut(s) 224, 470
MscI TGGCCA 2 cut(s) 224, 470
MseI TTAA 3 cut(s) 6, 834, 885
MslI CAYNNNNRTG 2 cut(s) 254, 436
Msp20I TGGCCA 2 cut(s) 224, 470
MspA1I CMGCKG 1 cut(s) 1099
MspI CCGG 2 cut(s) 122, 1165
MspR9I CCNGG 6 cut(s) 122, 413, 864, 1009, 1165, 1166
Mva1269I GAATGC 1 cut(s) 859
MvaI CCWGG 3 cut(s) 413, 864, 1009
MvnI CGCG 1 cut(s) 148
MwoI GCNNNNNNNGC 4 cut(s) 131, 294, 303, 620
NciI CCSGG 3 cut(s) 122, 1165, 1166
NdeII GATC 3 cut(s) 426, 657, 819
NlaIII CATG 9 cut(s) 201, 253, 420, 435, 449, 649, 872, 967, 1113
NlaIV GGNNCC 2 cut(s) 50, 207
NmeAIII GCCGAG 1 cut(s) 257
NmuCI GTSAC 2 cut(s) 244, 1056
NspI RCATGY 4 cut(s) 449, 649, 872, 1113
NspV TTCGAA 1 cut(s) 529
PaeI GCATGC 1 cut(s) 649
PctI GAATGC 1 cut(s) 859
PfeI GAWTC 2 cut(s) 499, 744
PflMI CCANNNNNTGG 2 cut(s) 344, 466
PkrI GCNGC 6 cut(s) 61, 64, 167, 308, 697, 1052
PleI GAGTC 1 cut(s) 489
PmaCI CACGTG 1 cut(s) 757
PmlI CACGTG 1 cut(s) 757
PpsI GAGTC 1 cut(s) 489
Ppu21I YACGTR 1 cut(s) 757
Psp6I CCWGG 3 cut(s) 411, 862, 1007
PspCI CACGTG 1 cut(s) 757
PspEI GGTNACC 1 cut(s) 244
PspGI CCWGG 3 cut(s) 411, 862, 1007
PspN4I GGNNCC 2 cut(s) 50, 207
PspPI GGNCC 6 cut(s) 49, 88, 127, 205, 304, 347
PsrI GAACNNNNNNTAC 2 cut(s) 906, 938
PvuII CAGCTG 1 cut(s) 1099
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
RseI CAYNNNNRTG 2 cut(s) 254, 436
SaqAI TTAA 3 cut(s) 6, 834, 885
SatI GCNGC 6 cut(s) 60, 63, 166, 307, 696, 1051
Sau3AI GATC 3 cut(s) 426, 657, 819
Sau96I GGNCC 6 cut(s) 49, 88, 127, 205, 304, 347
SchI GAGTC 1 cut(s) 490
ScrFI CCNGG 6 cut(s) 122, 413, 864, 1009, 1165, 1166
SduI GDGCHC 4 cut(s) 120, 382, 625, 1171
SfuI TTCGAA 1 cut(s) 529
SinI GGWCC 3 cut(s) 49, 88, 205
SmaI CCCGGG 1 cut(s) 1166
SmiI ATTTAAAT 1 cut(s) 835
SmiMI CAYNNNNRTG 2 cut(s) 254, 436
SmlI CTYRAG 2 cut(s) 326, 506
SmoI CTYRAG 2 cut(s) 326, 506
SphI GCATGC 1 cut(s) 649
Sse9I AATT 6 cut(s) 515, 531, 667, 730, 830, 1065
SsiI CCGC 7 cut(s) 62, 100, 125, 154, 307, 421, 823
SspI AATATT 1 cut(s) 939
SspMI CTAG 2 cut(s) 383, 638
StyD4I CCNGG 6 cut(s) 120, 411, 862, 1007, 1163, 1164
SwaI ATTTAAAT 1 cut(s) 835
TaaI ACNGT 1 cut(s) 1004
TaiI ACGT 2 cut(s) 390, 759
TaqI TCGA 2 cut(s) 529, 979
TasI AATT 6 cut(s) 515, 531, 667, 730, 830, 1065
TauI GCSGC 2 cut(s) 65, 309
TfiI GAWTC 2 cut(s) 499, 744
Tru1I TTAA 3 cut(s) 6, 834, 885
Tru9I TTAA 3 cut(s) 6, 834, 885
TscAI CASTG 1 cut(s) 744
TseFI GTSAC 2 cut(s) 244, 1056
TseI GCWGC 4 cut(s) 59, 165, 695, 1050
Tsp45I GTSAC 2 cut(s) 244, 1056
TspDTI ATGAA 5 cut(s) 392, 481, 567, 696, 1131
TspGWI ACGGA 1 cut(s) 80
TspMI CCCGGG 1 cut(s) 1164
TspRI CASTG 1 cut(s) 744
Van91I CCANNNNNTGG 2 cut(s) 344, 466
VneI GTGCAC 2 cut(s) 116, 621
VpaK11BI GGWCC 3 cut(s) 49, 88, 205
XapI RAATTY 3 cut(s) 515, 730, 1065
XbaI TCTAGA 1 cut(s) 382
XceI RCATGY 4 cut(s) 449, 649, 872, 1113
XmaI CCCGGG 1 cut(s) 1164
XmiI GTMKAC 1 cut(s) 634
XspI CTAG 2 cut(s) 383, 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.