Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0002566

Physical Location & Seq

Genomic Coordinates Forward (+)

7439491 .. 7443305

Gene Structure 3815 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1090500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGGGTTTTCTGGGTCTGAATCAAAATCAATACACCGAAAAAGGGGAGATTTTTATGGAGAGAGGCCAATCTGCTGCGCCGAGCAGCTTAGATATAAAGGTGGTGCGTCCACGGCAGAGCGACAACGTTGTGCAACCGGCGGGGCAAGGTTCGGTGACGCCGCAGCCGCGGCGGTCGTTCAGCGACTACAACCCGTTCAAGAGTTGGGTGTCATGGCTGGTGCCGTTGATTGTGGTGGCCAACATTGTCGTTTTTGTGGTGACCATGTTCGTGAACGATTGCCCCAAGAACTCCGGCAGGTGCATTGGTCGGTTCCTCGGCCGCTTCTCCTTTCAGCCCTTCAAGGAAAACCTGTTTCTTGGGCCATCTTCAAACACATTAGAAAAGATGGGTGCTCTAGATGCGCAGAGAGTGGTTCATCAACACCAGGGGTGGCGGCTGATCTCATGTATGTGGTTACATGCTGGAGTTTTCCATGTGCTTGCCAATATGCTGAGTCTTTTATTCATTGGAATTCGGCTTGAGCAAGAATTTGGATTTGTTCGAATTGGTATTCTATATGTCATGTCCGGTTTTGGCGGGAGTTTGCTTTCAGCTCTTTTTATTCAATATGGTATTTCTGTTGGTGCTTCTGGTGCACTTTTTGGTTTACTAGGAAGCATGCTTTCGGAGCTCATATCAAATTGGACAATGTATGCGAACAAGTTAGCAGCATTGCTTACTCTCGTTTTCATCATCATAATAAACTTAGCAGCGGGACTTCTACCACACGTGGACAACTTTGCTCATATTGGAGGATTTGTTTCCGGATTTCTTTTTGGATTTGTGTTTTTGATCCGCCCCCAGTTTAAATGGCTTACCCAACGGAATGCTCCCCCGGGACTTATTGCTACTCCAGTTAAATCCAAACACAAGACGTATCAATATGTATTGTGGGTCCTCTCACTGATACTATTGATTGTTGGGTATACTCTTGGCCTGATTACTCTTTTTCGAGGGGTCAATCTAAATGATCACTGTTCCTGGTGTCAGTATATGAGCTGCATCCCTATTTCAAAACGGAGTTGCAAATCACAAAATGTTTATTGTTTGTCGAGCCAGATAGGGAATCAACTGAACTTAACGTGCGTAAGCAACGGTAGAAATGGGACATATTCATTGTCGGATCCCAGCGCCTCCCGGGCTCAGCAGCTATGCACTGACCTTTGCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006928 GO:0008150 GO:0008283 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

405

Amino Acids

44.7

Weight (kDa)

9.42

Isoelectric Point (pI)

37.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	142 - 278	2.5e-41	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29050 AT2G29050
fragaria_vesca	FvH4_3g36420 FvH4_3g36420 FvH4_3g36420 FvH4_3g36420
malus_domestica	MD00G1013900.v1.1 MD00G1178600.v1.1 MD00G1178800.v1.1 MD03G1090500.v1.1 MD11G1100200.v1.1 MD11G1101200.v1.1 MD11G1101800.v1.1 MD11G1102100.v1.1 MD11G1104300.v1.1 MD11G1105000.v1.1 MD11G1106000.v1.1 MD11G1106300.v1.1 MD11G1106700.v1.1 MD11G1106900.v1.1 MD11G1107000.v1.1 MD11G1107900.v1.1 MD11G1261200.v1.1 MD15G1402100.v1.1
prunus_persica	Prupe.6G074600_v2.0.a1
pyrus_communis	pycom03g07200 pycom11g08440
rosa_chinensis	RchiOBHm_Chr5g0065311
rosa_laevigata	RLG00000035780 RLG00000035781 RLG00000035782
rosa_multiflora	Rmu_sc0009942.1_g000006 Rmu_sc0013827.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015870
rosa_rugosa	Rorug05G0371200
rosa_samantha	Rh5AG429000 Rh5BG444300 Rh5CG466500 Rh5DG456600
rosa_wichuraiana	Rw5G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	288
Acc16I	TGCGCA	1 cut(s)	405
Acc36I	ACCTGC	1 cut(s)	288
AccB1I	GGYRCC	1 cut(s)	220
AccI	GTMKAC	1 cut(s)	968
AccII	CGCG	1 cut(s)	169
AccIII	TCCGGA	1 cut(s)	806
AclI	AACGTT	1 cut(s)	126
AclWI	GGATC	3 cut(s)	829, 1160, 1173
AcoI	YGGCCR	2 cut(s)	237, 319
AcsI	RAATTY	2 cut(s)	513, 530
AcvI	CACGTG	1 cut(s)	772
AcyI	GRCGYC	1 cut(s)	158
AfiI	CCNNNNNNNGG	1 cut(s)	42
AflIII	ACRYGT	1 cut(s)	769
AgsI	TTSAA	5 cut(s)	199, 343, 372, 608, 1056
AjnI	CCWGG	2 cut(s)	426, 1022
AluBI	AGCT	5 cut(s)	87, 596, 673, 1041, 1192
AluI	AGCT	5 cut(s)	87, 596, 673, 1041, 1192
Alw21I	GWGCWC	3 cut(s)	397, 640, 675
Alw44I	GTGCAC	1 cut(s)	636
AlwI	GGATC	3 cut(s)	829, 1160, 1173
Ama87I	CYCGRG	2 cut(s)	877, 1179
Aor13HI	TCCGGA	1 cut(s)	806
AoxI	GGCC	5 cut(s)	64, 237, 319, 362, 976
ApaLI	GTGCAC	1 cut(s)	636
ApeKI	GCWGC	7 cut(s)	74, 84, 163, 710, 752, 1041, 1189
ApoI	RAATTY	2 cut(s)	513, 530
AspLEI	GCGC	3 cut(s)	79, 406, 1175
AspS9I	GGNCC	2 cut(s)	362, 937
AsuC2I	CCSGG	4 cut(s)	878, 879, 1180, 1181
AsuHPI	GGTGA	2 cut(s)	166, 271
AsuII	TTCGAA	1 cut(s)	544
AvaI	CYCGRG	2 cut(s)	877, 1179
AvaII	GGWCC	1 cut(s)	937
BaeGI	GKGCMC	1 cut(s)	640
BalI	TGGCCA	1 cut(s)	239
BamHI	GGATCC	1 cut(s)	1165
BanI	GGYRCC	1 cut(s)	220
BanII	GRGCYC	2 cut(s)	675, 1186
BbrPI	CACGTG	1 cut(s)	772
Bbv12I	GWGCWC	3 cut(s)	397, 640, 675
BbvI	GCAGC	7 cut(s)	61, 96, 175, 722, 764, 1028, 1201
BccI	CCATC	2 cut(s)	373, 382
BceAI	ACGGC	2 cut(s)	128, 208
BciT130I	CCWGG	2 cut(s)	428, 1024
BclI	TGATCA	1 cut(s)	1012
BcnI	CCSGG	4 cut(s)	878, 879, 1180, 1181
BfaI	CTAG	2 cut(s)	398, 653
BfoI	RGCGCY	1 cut(s)	1176
BfuAI	ACCTGC	1 cut(s)	288
BglI	GCCNNNNNGGC	1 cut(s)	1181
BlpI	GCTNAGC	1 cut(s)	1185
Bme1390I	CCNGG	6 cut(s)	428, 878, 879, 1024, 1180, 1181
Bme18I	GGWCC	1 cut(s)	937
BmeT110I	CYCGRG	2 cut(s)	877, 1179
BmgT120I	GGNCC	2 cut(s)	362, 937
BmiI	GGNNCC	4 cut(s)	222, 314, 938, 1167
BmrFI	CCNGG	6 cut(s)	428, 878, 879, 1024, 1180, 1181
BmrI	ACTGGG	1 cut(s)	838
BmsI	GCATC	2 cut(s)	391, 1053
BmuI	ACTGGG	1 cut(s)	838
BpmI	CTGGAG	2 cut(s)	486, 879
Bpu1102I	GCTNAGC	1 cut(s)	1185
Bpu14I	TTCGAA	1 cut(s)	544
BpuEI	CTTGAG	1 cut(s)	542
BpuMI	CCSGG	4 cut(s)	878, 879, 1180, 1181
BsaAI	YACGTR	1 cut(s)	772
BsaHI	GRCGYC	1 cut(s)	158
BsaJI	CCNNGG	7 cut(s)	110, 167, 316, 427, 876, 877, 1179
BsaWI	WCCGGW	2 cut(s)	569, 806
BsaXI	ACNNNNNCTCC	2 cut(s)	786, 816
Bsc4I	CCNNNNNNNGG	1 cut(s)	42
Bse118I	RCCGGY	1 cut(s)	136
Bse1I	ACTGG	2 cut(s)	844, 896
Bse3DI	GCAATG	1 cut(s)	713
BseAI	TCCGGA	1 cut(s)	806
BseBI	CCWGG	2 cut(s)	428, 1024
BseDI	CCNNGG	7 cut(s)	110, 167, 316, 427, 876, 877, 1179
BseGI	GGATG	1 cut(s)	1044
BseLI	CCNNNNNNNGG	1 cut(s)	42
BseMI	GCAATG	1 cut(s)	713
BseMII	CTCAG	2 cut(s)	485, 1199
BseNI	ACTGG	2 cut(s)	844, 896
BseSI	GKGCMC	1 cut(s)	640
BseX3I	CGGCCG	1 cut(s)	319
BseXI	GCAGC	7 cut(s)	61, 96, 175, 722, 764, 1028, 1201
BseYI	CCCAGC	1 cut(s)	1169
Bsh1236I	CGCG	1 cut(s)	169
Bsh1285I	CGRYCG	2 cut(s)	176, 322
BshFI	GGCC	5 cut(s)	66, 239, 321, 364, 978
BshNI	GGYRCC	1 cut(s)	220
BsiEI	CGRYCG	2 cut(s)	176, 322
BsiHKAI	GWGCWC	3 cut(s)	397, 640, 675
BsiHKCI	CYCGRG	2 cut(s)	877, 1179
BsiSI	CCGG	6 cut(s)	137, 294, 570, 807, 878, 1180
BslFI	GGGAC	3 cut(s)	771, 894, 1162
BslI	CCNNNNNNNGG	1 cut(s)	42
BsmFI	GGGAC	3 cut(s)	771, 894, 1162
BsmI	GAATGC	1 cut(s)	874
BsnI	GGCC	5 cut(s)	66, 239, 321, 364, 978
BsoBI	CYCGRG	2 cut(s)	877, 1179
Bsp119I	TTCGAA	1 cut(s)	544
Bsp1286I	GDGCHC	4 cut(s)	397, 640, 675, 1186
Bsp13I	TCCGGA	1 cut(s)	806
Bsp143I	GATC	4 cut(s)	441, 834, 1012, 1165
Bsp1720I	GCTNAGC	1 cut(s)	1185
BspANI	GGCC	5 cut(s)	66, 239, 321, 364, 978
BspCNI	CTCAG	2 cut(s)	486, 1198
BspEI	TCCGGA	1 cut(s)	806
BspFNI	CGCG	1 cut(s)	169
BspLI	GGNNCC	4 cut(s)	222, 314, 938, 1167
BspMI	ACCTGC	1 cut(s)	288
BspPI	GGATC	3 cut(s)	829, 1160, 1173
BspT104I	TTCGAA	1 cut(s)	544
BspT107I	GGYRCC	1 cut(s)	220
BsrDI	GCAATG	1 cut(s)	713
BsrFI	RCCGGY	1 cut(s)	136
BsrI	ACTGG	2 cut(s)	844, 896
BssAI	RCCGGY	1 cut(s)	136
BssECI	CCNNGG	7 cut(s)	110, 167, 316, 427, 876, 877, 1179
BssMI	GATC	4 cut(s)	441, 834, 1012, 1165
BssNAI	GTATAC	1 cut(s)	969
BssNI	GRCGYC	1 cut(s)	158
Bst1107I	GTATAC	1 cut(s)	969
Bst2UI	CCWGG	2 cut(s)	428, 1024
Bst4CI	ACNGT	2 cut(s)	1019, 1139
BstACI	GRCGYC	1 cut(s)	158
BstBAI	YACGTR	1 cut(s)	772
BstBI	TTCGAA	1 cut(s)	544
BstC8I	GCNNGC	2 cut(s)	483, 662
BstDEI	CTNAG	4 cut(s)	88, 494, 748, 1185
BstDSI	CCRYGG	2 cut(s)	110, 167
BstEII	GGTNACC	1 cut(s)	259
BstF5I	GGATG	1 cut(s)	1044
BstFNI	CGCG	1 cut(s)	169
BstH2I	RGCGCY	1 cut(s)	1176
BstHHI	GCGC	3 cut(s)	79, 406, 1175
BstKTI	GATC	4 cut(s)	444, 837, 1015, 1168
BstMBI	GATC	4 cut(s)	441, 834, 1012, 1165
BstMCI	CGRYCG	2 cut(s)	176, 322
BstMWI	GCNNNNNNNGC	7 cut(s)	112, 166, 169, 401, 635, 670, 1181
BstNI	CCWGG	2 cut(s)	428, 1024
BstNSI	RCATGY	2 cut(s)	464, 664
BstPI	GGTNACC	1 cut(s)	259
BstSCI	CCNGG	6 cut(s)	426, 876, 877, 1022, 1178, 1179
BstSLI	GKGCMC	1 cut(s)	640
BstUI	CGCG	1 cut(s)	169
BstV1I	GCAGC	7 cut(s)	61, 96, 175, 722, 764, 1028, 1201
BstX2I	RGATCY	1 cut(s)	1165
BstYI	RGATCY	1 cut(s)	1165
BstZ17I	GTATAC	1 cut(s)	969
BstZI	CGGCCG	1 cut(s)	319
BsuRI	GGCC	5 cut(s)	66, 239, 321, 364, 978
BtgI	CCRYGG	2 cut(s)	110, 167
BtsCI	GGATG	1 cut(s)	1044
BtsIMutI	CAGTG	3 cut(s)	944, 1015, 1197
BveI	ACCTGC	1 cut(s)	288
Cac8I	GCNNGC	2 cut(s)	483, 662
CfoI	GCGC	3 cut(s)	79, 406, 1175
Cfr10I	RCCGGY	1 cut(s)	136
Cfr13I	GGNCC	2 cut(s)	362, 937
Cfr42I	CCGCGG	1 cut(s)	170
Cfr9I	CCCGGG	2 cut(s)	877, 1179
CseI	GACGC	2 cut(s)	95, 166
CviAII	CATG	7 cut(s)	213, 265, 447, 461, 476, 565, 661
DdeI	CTNAG	4 cut(s)	88, 494, 748, 1185
DpnI	GATC	4 cut(s)	443, 836, 1014, 1167
DpnII	GATC	4 cut(s)	441, 834, 1012, 1165
DraI	TTTAAA	1 cut(s)	850
EaeI	YGGCCR	2 cut(s)	237, 319
EagI	CGGCCG	1 cut(s)	319
EciI	GGCGGA	1 cut(s)	827
Ecl136II	GAGCTC	1 cut(s)	673
EclXI	CGGCCG	1 cut(s)	319
Eco24I	GRGCYC	2 cut(s)	675, 1186
Eco47I	GGWCC	1 cut(s)	937
Eco52I	CGGCCG	1 cut(s)	319
Eco53kI	GAGCTC	1 cut(s)	673
Eco72I	CACGTG	1 cut(s)	772
Eco88I	CYCGRG	2 cut(s)	877, 1179
Eco91I	GGTNACC	1 cut(s)	259
EcoICRI	GAGCTC	1 cut(s)	673
EcoO109I	RGGNCCY	1 cut(s)	937
EcoO65I	GGTNACC	1 cut(s)	259
EcoRI	GAATTC	1 cut(s)	513
EcoRII	CCWGG	2 cut(s)	426, 1022
EcoT38I	GRGCYC	2 cut(s)	675, 1186
FaeI	CATG	7 cut(s)	216, 268, 450, 464, 479, 568, 664
FaqI	GGGAC	3 cut(s)	771, 894, 1162
FatI	CATG	7 cut(s)	212, 264, 446, 460, 475, 564, 660
FauI	CCCGC	3 cut(s)	133, 572, 748
FbaI	TGATCA	1 cut(s)	1012
FblI	GTMKAC	1 cut(s)	968
FokI	GGATG	1 cut(s)	1031
FriOI	GRGCYC	2 cut(s)	675, 1186
FspBI	CTAG	2 cut(s)	398, 653
FspI	TGCGCA	1 cut(s)	405
GlaI	GCGC	3 cut(s)	78, 405, 1174
GsaI	CCCAGC	1 cut(s)	1173
GsuI	CTGGAG	2 cut(s)	486, 879
HaeII	RGCGCY	1 cut(s)	1176
HaeIII	GGCC	5 cut(s)	66, 239, 321, 364, 978
HapII	CCGG	6 cut(s)	137, 294, 570, 807, 878, 1180
HgaI	GACGC	2 cut(s)	95, 166
HhaI	GCGC	3 cut(s)	79, 406, 1175
Hin1I	GRCGYC	1 cut(s)	158
Hin1II	CATG	7 cut(s)	216, 268, 450, 464, 479, 568, 664
Hin6I	GCGC	3 cut(s)	77, 404, 1173
HinP1I	GCGC	3 cut(s)	77, 404, 1173
HinfI	GANTC	3 cut(s)	19, 496, 1108
HpaII	CCGG	6 cut(s)	137, 294, 570, 807, 878, 1180
HphI	GGTGA	2 cut(s)	166, 271
Hpy166II	GTNNAC	6 cut(s)	110, 274, 638, 650, 775, 969
Hpy188I	TCNGA	3 cut(s)	18, 670, 1165
Hpy188III	TCNNGA	4 cut(s)	199, 271, 398, 807
Hpy8I	GTNNAC	6 cut(s)	110, 274, 638, 650, 775, 969
HpyAV	CCTTC	1 cut(s)	349
HpyCH4III	ACNGT	2 cut(s)	1019, 1139
HpyCH4IV	ACGT	4 cut(s)	126, 771, 917, 1124
HpyCH4V	TGCA	7 cut(s)	133, 303, 638, 1044, 1068, 1197, 1209
HpyF10VI	GCNNNNNNNGC	7 cut(s)	112, 166, 169, 401, 635, 670, 1181
HpyF3I	CTNAG	4 cut(s)	88, 494, 748, 1185
HpySE526I	ACGT	4 cut(s)	126, 771, 917, 1124
Hsp92I	GRCGYC	1 cut(s)	158
Hsp92II	CATG	7 cut(s)	216, 268, 450, 464, 479, 568, 664
HspAI	GCGC	3 cut(s)	77, 404, 1173
Kpn2I	TCCGGA	1 cut(s)	806
Ksp22I	TGATCA	1 cut(s)	1012
KspI	CCGCGG	1 cut(s)	170
Kzo9I	GATC	4 cut(s)	441, 834, 1012, 1165
LmnI	GCTCC	2 cut(s)	670, 877
Lsp1109I	GCAGC	7 cut(s)	61, 96, 175, 722, 764, 1028, 1201
LweI	GCATC	2 cut(s)	391, 1053
MaeI	CTAG	2 cut(s)	398, 653
MaeII	ACGT	4 cut(s)	126, 771, 917, 1124
MaeIII	GTNAC	3 cut(s)	154, 259, 456
MalI	GATC	4 cut(s)	443, 836, 1014, 1167
MboI	GATC	4 cut(s)	441, 834, 1012, 1165
MboII	GAAGA	1 cut(s)	360
MflI	RGATCY	1 cut(s)	1165
MhlI	GDGCHC	4 cut(s)	397, 640, 675, 1186
MlsI	TGGCCA	1 cut(s)	239
MluCI	AATT	4 cut(s)	513, 530, 546, 682
MluNI	TGGCCA	1 cut(s)	239
MlyI	GAGTC	1 cut(s)	505
MmeI	TCCRAC	1 cut(s)	1143
MnlI	CCTC	6 cut(s)	56, 326, 788, 950, 989, 1186
Mox20I	TGGCCA	1 cut(s)	239
MroI	TCCGGA	1 cut(s)	806
MscI	TGGCCA	1 cut(s)	239
MseI	TTAA	3 cut(s)	849, 900, 1121
MslI	CAYNNNNRTG	2 cut(s)	269, 451
Msp20I	TGGCCA	1 cut(s)	239
MspA1I	CMGCKG	2 cut(s)	169, 755
MspI	CCGG	6 cut(s)	137, 294, 570, 807, 878, 1180
MspR9I	CCNGG	6 cut(s)	428, 878, 879, 1024, 1180, 1181
Mva1269I	GAATGC	1 cut(s)	874
MvaI	CCWGG	2 cut(s)	428, 1024
MvnI	CGCG	1 cut(s)	169
MwoI	GCNNNNNNNGC	7 cut(s)	112, 166, 169, 401, 635, 670, 1181
NciI	CCSGG	4 cut(s)	878, 879, 1180, 1181
NdeII	GATC	4 cut(s)	441, 834, 1012, 1165
NlaIII	CATG	7 cut(s)	216, 268, 450, 464, 479, 568, 664
NlaIV	GGNNCC	4 cut(s)	222, 314, 938, 1167
NmeAIII	GCCGAG	2 cut(s)	105, 297
NmuCI	GTSAC	2 cut(s)	154, 259
NsbI	TGCGCA	1 cut(s)	405
NspI	RCATGY	2 cut(s)	464, 664
NspV	TTCGAA	1 cut(s)	544
PaeI	GCATGC	1 cut(s)	664
PaqCI	CACCTGC	1 cut(s)	288
PctI	GAATGC	1 cut(s)	874
PfeI	GAWTC	2 cut(s)	19, 1108
PleI	GAGTC	1 cut(s)	504
PmaCI	CACGTG	1 cut(s)	772
PmlI	CACGTG	1 cut(s)	772
PpsI	GAGTC	1 cut(s)	504
Ppu21I	YACGTR	1 cut(s)	772
PpuMI	RGGWCCY	1 cut(s)	937
Psp124BI	GAGCTC	1 cut(s)	675
Psp1406I	AACGTT	1 cut(s)	126
Psp5II	RGGWCCY	1 cut(s)	937
Psp6I	CCWGG	2 cut(s)	426, 1022
PspCI	CACGTG	1 cut(s)	772
PspEI	GGTNACC	1 cut(s)	259
PspFI	CCCAGC	1 cut(s)	1169
PspGI	CCWGG	2 cut(s)	426, 1022
PspN4I	GGNNCC	4 cut(s)	222, 314, 938, 1167
PspPI	GGNCC	2 cut(s)	362, 937
PspPPI	RGGWCCY	1 cut(s)	937
PsuI	RGATCY	1 cut(s)	1165
RseI	CAYNNNNRTG	2 cut(s)	269, 451
SacI	GAGCTC	1 cut(s)	675
SacII	CCGCGG	1 cut(s)	170
SaqAI	TTAA	3 cut(s)	849, 900, 1121
Sau3AI	GATC	4 cut(s)	441, 834, 1012, 1165
Sau96I	GGNCC	2 cut(s)	362, 937
SchI	GAGTC	1 cut(s)	505
ScrFI	CCNGG	6 cut(s)	428, 878, 879, 1024, 1180, 1181
SduI	GDGCHC	4 cut(s)	397, 640, 675, 1186
SfaNI	GCATC	2 cut(s)	391, 1053
Sfr303I	CCGCGG	1 cut(s)	170
SfuI	TTCGAA	1 cut(s)	544
SgrBI	CCGCGG	1 cut(s)	170
SinI	GGWCC	1 cut(s)	937
SmaI	CCCGGG	2 cut(s)	879, 1181
SmiMI	CAYNNNNRTG	2 cut(s)	269, 451
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
SphI	GCATGC	1 cut(s)	664
Sse9I	AATT	4 cut(s)	513, 530, 546, 682
SspMI	CTAG	2 cut(s)	398, 653
SstI	GAGCTC	1 cut(s)	675
StyD4I	CCNGG	6 cut(s)	426, 876, 877, 1022, 1178, 1179
TaaI	ACNGT	2 cut(s)	1019, 1139
TaiI	ACGT	4 cut(s)	129, 774, 920, 1127
TaqI	TCGA	3 cut(s)	544, 994, 1094
TasI	AATT	4 cut(s)	513, 530, 546, 682
TauI	GCSGC	5 cut(s)	163, 169, 172, 324, 439
TfiI	GAWTC	2 cut(s)	19, 1108
Tru1I	TTAA	3 cut(s)	849, 900, 1121
Tru9I	TTAA	3 cut(s)	849, 900, 1121
TscAI	CASTG	3 cut(s)	951, 1022, 1204
TseFI	GTSAC	2 cut(s)	154, 259
TseI	GCWGC	7 cut(s)	74, 84, 163, 710, 752, 1041, 1189
Tsp45I	GTSAC	2 cut(s)	154, 259
TspDTI	ATGAA	4 cut(s)	407, 496, 721, 1146
TspGWI	ACGGA	2 cut(s)	880, 1075
TspMI	CCCGGG	2 cut(s)	877, 1179
TspRI	CASTG	3 cut(s)	951, 1022, 1204
VneI	GTGCAC	1 cut(s)	636
VpaK11BI	GGWCC	1 cut(s)	937
XapI	RAATTY	2 cut(s)	513, 530
XbaI	TCTAGA	1 cut(s)	397
XceI	RCATGY	2 cut(s)	464, 664
XmaI	CCCGGG	2 cut(s)	877, 1179
XmiI	GTMKAC	1 cut(s)	968
XspI	CTAG	2 cut(s)	398, 653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.