Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013827.1

Orthogroup ID

OG0002566

Physical Location & Seq

Genomic Coordinates Reverse (-)

24476 .. 25796

Gene Structure 1321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013827.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atgttggacctcttctatgtgcactacccttatcttactatgtcagatttttatgtgcagttagcggcattgcttactctcattttcatcattgtaataaatttagcagtgggaattcttccacatgtggacaactttgctcatattggaggatttgtttctggatttctccttggatttgtgtttctgatccgcccccagtataaatgggttaatcaaatgaatgctcgccctggaagtattacaactccagttagatctaaacacaagacctatcagtatgtattgtgggttatctctctgatactactgattgctgggtatactcttgccctgatttatctcctaagaggagtcaatctgaatgactactgttcctggtgtcattatttgagctgtgtcccaacctccaaatggaagtgccagccacgccaaattgagtgtttgacaaaccagcttggaaatcaactgaacttgacttgctcaagcaacgggagaatgggcacatattcattggcagataacagcccttcccggattcagcagctatgtacggagctttgcagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006928 GO:0008150 GO:0008283 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

189

Amino Acids

21.5

Weight (kDa)

8.79

Isoelectric Point (pI)

46.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29050 AT2G29050
fragaria_vesca	FvH4_3g36420 FvH4_3g36420 FvH4_3g36420 FvH4_3g36420
malus_domestica	MD00G1013900.v1.1 MD00G1178600.v1.1 MD00G1178800.v1.1 MD03G1090500.v1.1 MD11G1100200.v1.1 MD11G1101200.v1.1 MD11G1101800.v1.1 MD11G1102100.v1.1 MD11G1104300.v1.1 MD11G1105000.v1.1 MD11G1106000.v1.1 MD11G1106300.v1.1 MD11G1106700.v1.1 MD11G1106900.v1.1 MD11G1107000.v1.1 MD11G1107900.v1.1 MD11G1261200.v1.1 MD15G1402100.v1.1
prunus_persica	Prupe.6G074600_v2.0.a1
pyrus_communis	pycom03g07200 pycom11g08440
rosa_chinensis	RchiOBHm_Chr5g0065311
rosa_laevigata	RLG00000035780 RLG00000035781 RLG00000035782
rosa_multiflora	Rmu_sc0009942.1_g000006 Rmu_sc0013827.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015870
rosa_rugosa	Rorug05G0371200
rosa_samantha	Rh5AG429000 Rh5BG444300 Rh5CG466500 Rh5DG456600
rosa_wichuraiana	Rw5G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	323
AciI	CCGC	2 cut(s)	65, 193
AclWI	GGATC	1 cut(s)	184
AcsI	RAATTY	2 cut(s)	100, 114
AfaI	GTAC	1 cut(s)	553
AfiI	CCNNNNNNNGG	1 cut(s)	414
AflIII	ACRYGT	1 cut(s)	124
AjnI	CCWGG	2 cut(s)	232, 377
AluBI	AGCT	4 cut(s)	396, 457, 547, 559
AluI	AGCT	4 cut(s)	396, 457, 547, 559
Alw21I	GWGCWC	1 cut(s)	24
Alw44I	GTGCAC	1 cut(s)	20
AlwI	GGATC	1 cut(s)	184
ApaLI	GTGCAC	1 cut(s)	20
ApeKI	GCWGC	1 cut(s)	544
ApoI	RAATTY	2 cut(s)	100, 114
AspS9I	GGNCC	1 cut(s)	7
AsuC2I	CCSGG	1 cut(s)	535
AvaII	GGWCC	1 cut(s)	7
BaeGI	GKGCMC	2 cut(s)	24, 506
Bbv12I	GWGCWC	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	556
BciT130I	CCWGG	2 cut(s)	234, 379
BcnI	CCSGG	1 cut(s)	535
BglII	AGATCT	1 cut(s)	257
BisI	GCNGC	2 cut(s)	66, 545
BlsI	GCNGC	2 cut(s)	67, 546
Bme1390I	CCNGG	3 cut(s)	234, 379, 535
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	7
BmrFI	CCNGG	3 cut(s)	234, 379, 535
BmrI	ACTGGG	1 cut(s)	193
BmuI	ACTGGG	1 cut(s)	193
BpmI	CTGGAG	1 cut(s)	234
BpuEI	CTTGAG	1 cut(s)	469
BpuMI	CCSGG	1 cut(s)	535
BsaJI	CCNNGG	2 cut(s)	172, 232
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bsc4I	CCNNNNNNNGG	1 cut(s)	414
Bse1I	ACTGG	2 cut(s)	199, 251
Bse3DI	GCAATG	1 cut(s)	68
BseBI	CCWGG	2 cut(s)	234, 379
BseDI	CCNNGG	2 cut(s)	172, 232
BseLI	CCNNNNNNNGG	1 cut(s)	414
BseMI	GCAATG	1 cut(s)	68
BseNI	ACTGG	2 cut(s)	199, 251
BseRI	GAGGAG	1 cut(s)	366
BseSI	GKGCMC	2 cut(s)	24, 506
BseXI	GCAGC	1 cut(s)	556
BseYI	CCCAGC	1 cut(s)	317
BsgI	GTGCAG	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	535
BslFI	GGGAC	1 cut(s)	386
BslI	CCNNNNNNNGG	1 cut(s)	414
BsmFI	GGGAC	1 cut(s)	386
BsmI	GAATGC	1 cut(s)	229
Bsp1286I	GDGCHC	2 cut(s)	24, 506
Bsp143I	GATC	2 cut(s)	189, 257
BspACI	CCGC	2 cut(s)	65, 193
BspPI	GGATC	1 cut(s)	184
BsrDI	GCAATG	1 cut(s)	68
BsrI	ACTGG	2 cut(s)	199, 251
BssECI	CCNNGG	2 cut(s)	172, 232
BssMI	GATC	2 cut(s)	189, 257
BssNAI	GTATAC	1 cut(s)	324
BssT1I	CCWWGG	1 cut(s)	172
Bst1107I	GTATAC	1 cut(s)	324
Bst2UI	CCWGG	2 cut(s)	234, 379
Bst4CI	ACNGT	1 cut(s)	374
Bst6I	CTCTTC	1 cut(s)	17
BstC8I	GCNNGC	2 cut(s)	229, 425
BstDEI	CTNAG	1 cut(s)	347
BstKTI	GATC	2 cut(s)	192, 260
BstMBI	GATC	2 cut(s)	189, 257
BstMWI	GCNNNNNNNGC	1 cut(s)	429
BstNI	CCWGG	2 cut(s)	234, 379
BstNSI	RCATGY	1 cut(s)	128
BstSCI	CCNGG	3 cut(s)	232, 377, 533
BstSLI	GKGCMC	2 cut(s)	24, 506
BstV1I	GCAGC	1 cut(s)	556
BstX2I	RGATCY	1 cut(s)	257
BstYI	RGATCY	1 cut(s)	257
BstZ17I	GTATAC	1 cut(s)	324
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	1 cut(s)	114
Cac8I	GCNNGC	2 cut(s)	229, 425
Cfr13I	GGNCC	1 cut(s)	7
Csp6I	GTAC	1 cut(s)	552
CviAII	CATG	1 cut(s)	125
CviJI	RGCY	6 cut(s)	396, 427, 457, 528, 547, 559
CviKI_1	RGCY	6 cut(s)	396, 427, 457, 528, 547, 559
CviQI	GTAC	1 cut(s)	552
DdeI	CTNAG	1 cut(s)	347
DpnI	GATC	2 cut(s)	191, 259
DpnII	GATC	2 cut(s)	189, 257
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
EciI	GGCGGA	1 cut(s)	182
Eco130I	CCWWGG	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	7
EcoRI	GAATTC	1 cut(s)	114
EcoRII	CCWGG	2 cut(s)	232, 377
EcoT14I	CCWWGG	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	1 cut(s)	128
FaqI	GGGAC	1 cut(s)	386
FatI	CATG	1 cut(s)	124
FblI	GTMKAC	1 cut(s)	323
Fnu4HI	GCNGC	2 cut(s)	66, 545
Fsp4HI	GCNGC	2 cut(s)	66, 545
GluI	GCNGC	2 cut(s)	66, 545
GsaI	CCCAGC	1 cut(s)	321
GsuI	CTGGAG	1 cut(s)	234
HapII	CCGG	1 cut(s)	535
Hin1II	CATG	1 cut(s)	128
HinfI	GANTC	2 cut(s)	354, 538
HpaII	CCGG	1 cut(s)	535
Hpy166II	GTNNAC	3 cut(s)	22, 130, 324
Hpy188I	TCNGA	4 cut(s)	46, 189, 303, 363
Hpy188III	TCNNGA	1 cut(s)	162
Hpy8I	GTNNAC	3 cut(s)	22, 130, 324
HpyAV	CCTTC	1 cut(s)	540
HpyCH4III	ACNGT	1 cut(s)	374
HpyCH4V	TGCA	3 cut(s)	22, 58, 564
HpyF10VI	GCNNNNNNNGC	1 cut(s)	429
HpyF3I	CTNAG	1 cut(s)	347
Hsp92II	CATG	1 cut(s)	128
Kzo9I	GATC	2 cut(s)	189, 257
LmnI	GCTCC	1 cut(s)	556
Lsp1109I	GCAGC	1 cut(s)	556
MalI	GATC	2 cut(s)	191, 259
MboI	GATC	2 cut(s)	189, 257
MboII	GAAGA	2 cut(s)	4, 110
MflI	RGATCY	1 cut(s)	257
MhlI	GDGCHC	2 cut(s)	24, 506
MluCI	AATT	3 cut(s)	100, 114, 435
MlyI	GAGTC	1 cut(s)	363
MnlI	CCTC	4 cut(s)	20, 143, 344, 418
MseI	TTAA	1 cut(s)	213
MspI	CCGG	1 cut(s)	535
MspR9I	CCNGG	3 cut(s)	234, 379, 535
Mva1269I	GAATGC	1 cut(s)	229
MvaI	CCWGG	2 cut(s)	234, 379
MwoI	GCNNNNNNNGC	1 cut(s)	429
NciI	CCSGG	1 cut(s)	535
NdeII	GATC	2 cut(s)	189, 257
NlaIII	CATG	1 cut(s)	128
NspI	RCATGY	1 cut(s)	128
PciI	ACATGT	1 cut(s)	124
PctI	GAATGC	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	538
PfoI	TCCNGGA	1 cut(s)	533
PkrI	GCNGC	2 cut(s)	67, 546
PleI	GAGTC	1 cut(s)	362
PpsI	GAGTC	1 cut(s)	362
PscI	ACATGT	1 cut(s)	124
Psp6I	CCWGG	2 cut(s)	232, 377
PspFI	CCCAGC	1 cut(s)	317
PspGI	CCWGG	2 cut(s)	232, 377
PspPI	GGNCC	1 cut(s)	7
PsuI	RGATCY	1 cut(s)	257
RsaI	GTAC	1 cut(s)	553
RsaNI	GTAC	1 cut(s)	552
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	2 cut(s)	66, 545
Sau3AI	GATC	2 cut(s)	189, 257
Sau96I	GGNCC	1 cut(s)	7
SchI	GAGTC	1 cut(s)	363
ScrFI	CCNGG	3 cut(s)	234, 379, 535
SduI	GDGCHC	2 cut(s)	24, 506
SetI	ASST	7 cut(s)	12, 275, 398, 410, 459, 549, 561
SinI	GGWCC	1 cut(s)	7
SmlI	CTYRAG	1 cut(s)	484
SmoI	CTYRAG	1 cut(s)	484
Sse9I	AATT	3 cut(s)	100, 114, 435
SsiI	CCGC	2 cut(s)	65, 193
StyD4I	CCNGG	3 cut(s)	232, 377, 533
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	1 cut(s)	374
TasI	AATT	3 cut(s)	100, 114, 435
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	1 cut(s)	538
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	1 cut(s)	114
TseI	GCWGC	1 cut(s)	544
TspDTI	ATGAA	3 cut(s)	76, 236, 501
TspGWI	ACGGA	1 cut(s)	569
TspRI	CASTG	1 cut(s)	114
VneI	GTGCAC	1 cut(s)	20
VpaK11BI	GGWCC	1 cut(s)	7
XapI	RAATTY	2 cut(s)	100, 114
XceI	RCATGY	1 cut(s)	128
XcmI	CCANNNNNNNNNTGG	1 cut(s)	411
XmiI	GTMKAC	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.