Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0018009

Physical Location & Seq

Genomic Coordinates Forward (+)

10367986 .. 10368531

Gene Structure 546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1114600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGTCTTCATGGATCGTAGCTTCTGTTGCTACTATTTCCAGCTTCACCCTCCTCTTCGCTTACTACAAGATACTCCAACGCCTTTGTAGACGACTTCAGAGCACAGGCTTCTCGAGAAACCCGAACCTAAGGCCTGTACCGAACGAGTTCAACCTAGACGATGCCTGGCTCGAGTCTCAGAGCAACGGACTGGACTTCTCGGTCGCTCGGTCTCTTCCCGTGACTCAGTTCAAGAAGAAAGATGAAGTTGAGGATGCCGAACGGAGGCCTGGCCAGAGCTACACAGACTGCGCAATCTGCTTAGGGGAGTTCGAAGACGGGGAATGGATAAAAGAACTACCGAAATGCTCCCATGAATTCCACATTGCTTGCATAGACATTTGGTTTGCGTCTCACTCAAACTGTCCCATATGCAGATCACAGGTCTATGATCCTATGCATGATTCTCCTGTTCCCACGCAAACTCCGGAAGAAACATTGAGCCGAGATGAAACCGAAGAAGGGGCGTCGCATTTCGAAATGCTGCGATCGTCCACCATGACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

182

Amino Acids

20.68

Weight (kDa)

4.92

Isoelectric Point (pI)

72.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	96 - 139	2.8e-12	Ring finger domain
zf-RING_11	PF17123	96 - 125	1.9e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	97 - 138	5.6e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	97 - 138	4.9e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	109 - 139	3.7e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018009)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34900
malus_domestica	MD11G1114600.v1.1
prunus_persica	Prupe.6G085400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0062771
rosa_laevigata	RLG00000035576
rosa_multiflora	Rmu_ssc0000472.1_g000010
rosa_roxburghii	Rroxscaffold_1G00017850
rosa_rugosa	Rorug05G0351600
rosa_samantha	Rh5AG412500 Rh5DG440300
rosa_wichuraiana	Rw5G038770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	200
Acc16I	TGCGCA	1 cut(s)	292
AccI	GTMKAC	1 cut(s)	88
AccIII	TCCGGA	1 cut(s)	466
AclWI	GGATC	2 cut(s)	20, 425
AcoI	YGGCCR	1 cut(s)	271
AcsI	RAATTY	1 cut(s)	356
AcuI	CTGAAG	1 cut(s)	80
AcyI	GRCGYC	1 cut(s)	506
AfaI	GTAC	1 cut(s)	138
AfiI	CCNNNNNNNGG	2 cut(s)	264, 501
AgsI	TTSAA	2 cut(s)	151, 232
AjiI	CACGTC	1 cut(s)	543
AjnI	CCWGG	2 cut(s)	164, 268
AluBI	AGCT	3 cut(s)	20, 42, 279
AluI	AGCT	3 cut(s)	20, 42, 279
Alw21I	GWGCWC	1 cut(s)	104
Alw26I	GTCTC	3 cut(s)	180, 216, 396
AlwI	GGATC	2 cut(s)	20, 425
Ama87I	CYCGRG	2 cut(s)	112, 170
Aor13HI	TCCGGA	1 cut(s)	466
AoxI	GGCC	3 cut(s)	131, 266, 271
ApeKI	GCWGC	1 cut(s)	523
ApoI	RAATTY	1 cut(s)	356
ArsI	GACNNNNNNTTYG	2 cut(s)	368, 400
Asp700I	GAANNNNTTC	1 cut(s)	146
AspLEI	GCGC	1 cut(s)	293
AsuHPI	GGTGA	1 cut(s)	37
AsuII	TTCGAA	2 cut(s)	312, 516
AvaI	CYCGRG	2 cut(s)	112, 170
AxyI	CCTNAGG	1 cut(s)	128
BalI	TGGCCA	1 cut(s)	273
BbsI	GAAGAC	1 cut(s)	321
Bbv12I	GWGCWC	1 cut(s)	104
BbvI	GCAGC	1 cut(s)	510
BciT130I	CCWGG	2 cut(s)	166, 270
BcoDI	GTCTC	3 cut(s)	180, 216, 396
BfaI	CTAG	1 cut(s)	155
BisI	GCNGC	1 cut(s)	524
BlsI	GCNGC	1 cut(s)	525
Bme1390I	CCNGG	2 cut(s)	166, 270
BmeT110I	CYCGRG	2 cut(s)	112, 170
BmgBI	CACGTC	1 cut(s)	543
BmrFI	CCNGG	2 cut(s)	166, 270
BmsI	GCATC	2 cut(s)	151, 244
BpiI	GAAGAC	1 cut(s)	321
Bpu10I	CCTNAGC	1 cut(s)	301
Bpu14I	TTCGAA	2 cut(s)	312, 516
BsaHI	GRCGYC	1 cut(s)	506
BsaI	GGTCTC	1 cut(s)	216
BsaWI	WCCGGW	1 cut(s)	466
BsaXI	ACNNNNNCTCC	2 cut(s)	448, 478
Bsc4I	CCNNNNNNNGG	2 cut(s)	264, 501
Bse1I	ACTGG	1 cut(s)	195
Bse21I	CCTNAGG	1 cut(s)	128
Bse3DI	GCAATG	1 cut(s)	363
BseAI	TCCGGA	1 cut(s)	466
BseBI	CCWGG	2 cut(s)	166, 270
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	2 cut(s)	264, 501
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	2 cut(s)	191, 239
BseNI	ACTGG	1 cut(s)	195
BseRI	GAGGAG	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	510
Bsh1285I	CGRYCG	2 cut(s)	204, 530
BshFI	GGCC	3 cut(s)	133, 268, 273
BsiEI	CGRYCG	2 cut(s)	204, 530
BsiHKAI	GWGCWC	1 cut(s)	104
BsiHKCI	CYCGRG	2 cut(s)	112, 170
BsiSI	CCGG	1 cut(s)	467
BslFI	GGGAC	1 cut(s)	390
BslI	CCNNNNNNNGG	2 cut(s)	264, 501
BsmAI	GTCTC	3 cut(s)	180, 216, 396
BsmBI	CGTCTC	1 cut(s)	396
BsmFI	GGGAC	1 cut(s)	390
BsnI	GGCC	3 cut(s)	133, 268, 273
Bso31I	GGTCTC	1 cut(s)	216
BsoBI	CYCGRG	2 cut(s)	112, 170
Bsp119I	TTCGAA	2 cut(s)	312, 516
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp13I	TCCGGA	1 cut(s)	466
Bsp143I	GATC	4 cut(s)	12, 416, 430, 527
BspANI	GGCC	3 cut(s)	133, 268, 273
BspCNI	CTCAG	2 cut(s)	190, 238
BspEI	TCCGGA	1 cut(s)	466
BspPI	GGATC	2 cut(s)	20, 425
BspT104I	TTCGAA	2 cut(s)	312, 516
BspTNI	GGTCTC	1 cut(s)	216
BsrDI	GCAATG	1 cut(s)	363
BsrI	ACTGG	1 cut(s)	195
BssMI	GATC	4 cut(s)	12, 416, 430, 527
BssNI	GRCGYC	1 cut(s)	506
Bst2UI	CCWGG	2 cut(s)	166, 270
Bst4CI	ACNGT	1 cut(s)	404
Bst6I	CTCTTC	2 cut(s)	59, 219
BstACI	GRCGYC	1 cut(s)	506
BstBI	TTCGAA	2 cut(s)	312, 516
BstC8I	GCNNGC	1 cut(s)	370
BstDEI	CTNAG	4 cut(s)	128, 177, 225, 301
BstF5I	GGATG	1 cut(s)	259
BstHHI	GCGC	1 cut(s)	293
BstKTI	GATC	4 cut(s)	15, 419, 433, 530
BstMAI	GTCTC	3 cut(s)	180, 216, 396
BstMBI	GATC	4 cut(s)	12, 416, 430, 527
BstMCI	CGRYCG	2 cut(s)	204, 530
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 297
BstNI	CCWGG	2 cut(s)	166, 270
BstSCI	CCNGG	2 cut(s)	164, 268
BstV1I	GCAGC	1 cut(s)	510
BstV2I	GAAGAC	1 cut(s)	321
Bsu36I	CCTNAGG	1 cut(s)	128
BsuRI	GGCC	3 cut(s)	133, 268, 273
BtrI	CACGTC	1 cut(s)	543
BtsCI	GGATG	1 cut(s)	259
Cac8I	GCNNGC	1 cut(s)	370
CfoI	GCGC	1 cut(s)	293
CseI	GACGC	2 cut(s)	378, 495
Csp6I	GTAC	1 cut(s)	137
CspCI	CAANNNNNGTGG	2 cut(s)	350, 385
CviAII	CATG	4 cut(s)	9, 353, 440, 538
CviJI	RGCY	9 cut(s)	20, 42, 108, 133, 169, 268, 273, 279, 483
CviKI_1	RGCY	9 cut(s)	20, 42, 108, 133, 169, 268, 273, 279, 483
CviQI	GTAC	1 cut(s)	137
DdeI	CTNAG	4 cut(s)	128, 177, 225, 301
DpnI	GATC	4 cut(s)	14, 418, 432, 529
DpnII	GATC	4 cut(s)	12, 416, 430, 527
DrdI	GACNNNNNNGTC	1 cut(s)	200
DseDI	GACNNNNNNGTC	1 cut(s)	200
EaeI	YGGCCR	1 cut(s)	271
Eam1104I	CTCTTC	2 cut(s)	59, 219
EarI	CTCTTC	2 cut(s)	59, 219
Eco147I	AGGCCT	2 cut(s)	133, 268
Eco31I	GGTCTC	1 cut(s)	216
Eco57I	CTGAAG	1 cut(s)	80
Eco81I	CCTNAGG	1 cut(s)	128
Eco88I	CYCGRG	2 cut(s)	112, 170
EcoRI	GAATTC	1 cut(s)	356
EcoRII	CCWGG	2 cut(s)	164, 268
EcoT22I	ATGCAT	1 cut(s)	441
Esp3I	CGTCTC	1 cut(s)	396
FaeI	CATG	4 cut(s)	12, 356, 443, 541
FaiI	YATR	9 cut(s)	10, 354, 374, 410, 412, 429, 437, 441, 539
FaqI	GGGAC	1 cut(s)	390
FatI	CATG	4 cut(s)	8, 352, 439, 537
FauNDI	CATATG	1 cut(s)	410
FblI	GTMKAC	1 cut(s)	88
Fnu4HI	GCNGC	1 cut(s)	524
FokI	GGATG	1 cut(s)	266
Fsp4HI	GCNGC	1 cut(s)	524
FspBI	CTAG	1 cut(s)	155
FspI	TGCGCA	1 cut(s)	292
GlaI	GCGC	1 cut(s)	292
GluI	GCNGC	1 cut(s)	524
HaeIII	GGCC	3 cut(s)	133, 268, 273
HapII	CCGG	1 cut(s)	467
HgaI	GACGC	2 cut(s)	378, 495
HhaI	GCGC	1 cut(s)	293
Hin1I	GRCGYC	1 cut(s)	506
Hin1II	CATG	4 cut(s)	12, 356, 443, 541
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HinfI	GANTC	3 cut(s)	173, 223, 443
HpaII	CCGG	1 cut(s)	467
HphI	GGTGA	1 cut(s)	37
Hpy166II	GTNNAC	2 cut(s)	89, 534
Hpy188I	TCNGA	2 cut(s)	99, 180
Hpy188III	TCNNGA	4 cut(s)	112, 114, 232, 467
Hpy8I	GTNNAC	2 cut(s)	89, 534
Hpy99I	CGWCG	1 cut(s)	511
HpyAV	CCTTC	1 cut(s)	494
HpyCH4III	ACNGT	1 cut(s)	404
HpyCH4IV	ACGT	1 cut(s)	542
HpyCH4V	TGCA	3 cut(s)	372, 414, 439
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 297
HpyF3I	CTNAG	4 cut(s)	128, 177, 225, 301
HpySE526I	ACGT	1 cut(s)	542
Hsp92I	GRCGYC	1 cut(s)	506
Hsp92II	CATG	4 cut(s)	12, 356, 443, 541
HspAI	GCGC	1 cut(s)	291
Kpn2I	TCCGGA	1 cut(s)	466
Kzo9I	GATC	4 cut(s)	12, 416, 430, 527
LmnI	GCTCC	1 cut(s)	353
Lsp1109I	GCAGC	1 cut(s)	510
LweI	GCATC	2 cut(s)	151, 244
MaeI	CTAG	1 cut(s)	155
MaeII	ACGT	1 cut(s)	542
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	4 cut(s)	14, 418, 432, 529
MboI	GATC	4 cut(s)	12, 416, 430, 527
MboII	GAAGA	6 cut(s)	46, 206, 247, 326, 482, 509
MhlI	GDGCHC	1 cut(s)	104
MlsI	TGGCCA	1 cut(s)	273
MluCI	AATT	1 cut(s)	356
MluNI	TGGCCA	1 cut(s)	273
MlyI	GAGTC	2 cut(s)	182, 217
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	4 cut(s)	59, 62, 244, 258
Mox20I	TGGCCA	1 cut(s)	273
Mph1103I	ATGCAT	1 cut(s)	441
MroI	TCCGGA	1 cut(s)	466
MroXI	GAANNNNTTC	1 cut(s)	146
MscI	TGGCCA	1 cut(s)	273
Msp20I	TGGCCA	1 cut(s)	273
MspI	CCGG	1 cut(s)	467
MspR9I	CCNGG	2 cut(s)	166, 270
MvaI	CCWGG	2 cut(s)	166, 270
MwoI	GCNNNNNNNGC	2 cut(s)	26, 297
NdeI	CATATG	1 cut(s)	410
NdeII	GATC	4 cut(s)	12, 416, 430, 527
NlaIII	CATG	4 cut(s)	12, 356, 443, 541
NmeAIII	GCCGAG	1 cut(s)	509
NmuCI	GTSAC	1 cut(s)	220
NsbI	TGCGCA	1 cut(s)	292
NsiI	ATGCAT	1 cut(s)	441
NspV	TTCGAA	2 cut(s)	312, 516
PaeR7I	CTCGAG	2 cut(s)	112, 170
PceI	AGGCCT	2 cut(s)	133, 268
PcsI	WCGNNNNNNNCGW	1 cut(s)	119
PdmI	GAANNNNTTC	1 cut(s)	146
PfeI	GAWTC	1 cut(s)	443
PkrI	GCNGC	1 cut(s)	525
Ple19I	CGATCG	1 cut(s)	530
PleI	GAGTC	2 cut(s)	181, 217
PpsI	GAGTC	2 cut(s)	181, 217
Psp6I	CCWGG	2 cut(s)	164, 268
PspGI	CCWGG	2 cut(s)	164, 268
PspXI	VCTCGAGB	1 cut(s)	170
PvuI	CGATCG	1 cut(s)	530
RsaI	GTAC	1 cut(s)	138
RsaNI	GTAC	1 cut(s)	137
SatI	GCNGC	1 cut(s)	524
Sau3AI	GATC	4 cut(s)	12, 416, 430, 527
SchI	GAGTC	2 cut(s)	182, 217
ScrFI	CCNGG	2 cut(s)	166, 270
SduI	GDGCHC	1 cut(s)	104
SetI	ASST	7 cut(s)	22, 44, 129, 156, 281, 426, 545
SfaNI	GCATC	2 cut(s)	151, 244
Sfr274I	CTCGAG	2 cut(s)	112, 170
SfuI	TTCGAA	2 cut(s)	312, 516
SlaI	CTCGAG	2 cut(s)	112, 170
SmlI	CTYRAG	2 cut(s)	112, 170
SmoI	CTYRAG	2 cut(s)	112, 170
Sse9I	AATT	1 cut(s)	356
SseBI	AGGCCT	2 cut(s)	133, 268
SspMI	CTAG	1 cut(s)	155
StuI	AGGCCT	2 cut(s)	133, 268
StyD4I	CCNGG	2 cut(s)	164, 268
TaaI	ACNGT	1 cut(s)	404
TaiI	ACGT	1 cut(s)	545
TaqI	TCGA	4 cut(s)	113, 171, 312, 516
TaqII	GACCGA	2 cut(s)	190, 198
TasI	AATT	1 cut(s)	356
TfiI	GAWTC	1 cut(s)	443
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	1 cut(s)	523
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	3 cut(s)	258, 369, 504
TspGWI	ACGGA	2 cut(s)	201, 277
XapI	RAATTY	1 cut(s)	356
XhoI	CTCGAG	2 cut(s)	112, 170
XmiI	GTMKAC	1 cut(s)	88
XmnI	GAANNNNTTC	1 cut(s)	146
XspI	CTAG	1 cut(s)	155
Zsp2I	ATGCAT	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.