Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0018009

Physical Location & Seq

Genomic Coordinates Forward (+)

5756087 .. 5756824

Gene Structure 738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G085400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGATTCAAGCTCACCCCCATCTCAGGATCCACCTTGGAGACCCTGGGTTATATCTTTTGTTGCTCTTGTTTGCGCCTTCACCCTCATATTCAGTTACTACAAGTTGCTCAAACGGCTCTGCAGCGCAAGCTTCTCAAGAAACCTGAATCGACGACGCATTCTGAACGAAATCAACCCAGATGATCCATCTCTACAGTTTCAGAGCCGGGGGCTAGACTTCTCTGTTAAGCGGTCTCTCCCCGTAACTCAGTTCAAGAAGAAAGATGAAGCAGAAGCTGCAGAACACAGCCAAAGCAATGCAGACTGCGCAATCTGCTTGGGCGAATTCGAAGGAGGCGAATGGCTGAAAAAACTGCCCAAATGCTCTCATGAGTTCCACATTTCTTGCATAGACACTTGGTTTGTGTCTCACTCAAACTGTCCCTTGTGCAGATCACAAGTCTACGATTTTATGCATGATTGTCTTGTTCCTATGGACACTGCATTAGAGACATTGAGCCAAGATGAAATTCAAGAAAGAGCATCACATTACCAAATGCTGCAGACATTGAGCCAAGAAGAAATTCAAGAAAGGGCATCTCATTACCAAATGCTGCGATTCACTATCCTGGAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

207

Amino Acids

23.88

Weight (kDa)

5.5

Isoelectric Point (pI)

68.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018009)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34900
malus_domestica	MD11G1114600.v1.1
prunus_persica	Prupe.6G085400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0062771
rosa_laevigata	RLG00000035576
rosa_multiflora	Rmu_ssc0000472.1_g000010
rosa_roxburghii	Rroxscaffold_1G00017850
rosa_rugosa	Rorug05G0351600
rosa_samantha	Rh5AG412500 Rh5DG440300
rosa_wichuraiana	Rw5G038770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	310
AccI	GTMKAC	1 cut(s)	444
AciI	CCGC	1 cut(s)	232
AclWI	GGATC	3 cut(s)	23, 36, 179
AcsI	RAATTY	3 cut(s)	326, 510, 564
AfiI	CCNNNNNNNGG	1 cut(s)	25
AgsI	TTSAA	4 cut(s)	9, 256, 515, 569
AjnI	CCWGG	2 cut(s)	44, 609
AjuI	GAANNNNNNNTTGG	4 cut(s)	495, 527, 549, 581
AluBI	AGCT	3 cut(s)	12, 132, 278
AluI	AGCT	3 cut(s)	12, 132, 278
Alw26I	GTCTC	4 cut(s)	34, 240, 414, 485
AlwI	GGATC	3 cut(s)	23, 36, 179
AlwNI	CAGNNNCTG	1 cut(s)	278
ApeKI	GCWGC	4 cut(s)	123, 278, 541, 595
ApoI	RAATTY	3 cut(s)	326, 510, 564
ArsI	GACNNNNNNTTYG	2 cut(s)	386, 418
Asp700I	GAANNNNTTC	1 cut(s)	564
AspLEI	GCGC	3 cut(s)	77, 128, 311
AsuC2I	CCSGG	1 cut(s)	209
AsuHPI	GGTGA	2 cut(s)	6, 73
AsuII	TTCGAA	1 cut(s)	330
BamHI	GGATCC	1 cut(s)	28
BbvI	GCAGC	4 cut(s)	135, 265, 528, 582
BccI	CCATC	2 cut(s)	28, 196
BceAI	ACGGC	1 cut(s)	131
BciT130I	CCWGG	2 cut(s)	46, 611
BcnI	CCSGG	1 cut(s)	209
BcoDI	GTCTC	4 cut(s)	34, 240, 414, 485
BfaI	CTAG	1 cut(s)	215
BfmI	CTRYAG	4 cut(s)	121, 194, 279, 542
BisI	GCNGC	4 cut(s)	124, 279, 542, 596
BlsI	GCNGC	4 cut(s)	125, 280, 543, 597
Bme1390I	CCNGG	3 cut(s)	46, 209, 611
BmiI	GGNNCC	1 cut(s)	30
BmrFI	CCNGG	3 cut(s)	46, 209, 611
BmsI	GCATC	2 cut(s)	533, 587
Bpu14I	TTCGAA	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	121
BpuMI	CCSGG	1 cut(s)	209
BsaI	GGTCTC	2 cut(s)	34, 240
BsaJI	CCNNGG	4 cut(s)	35, 44, 45, 208
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse3DI	GCAATG	1 cut(s)	304
BseBI	CCWGG	2 cut(s)	46, 611
BseDI	CCNNGG	4 cut(s)	35, 44, 45, 208
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseMI	GCAATG	1 cut(s)	304
BseMII	CTCAG	2 cut(s)	38, 263
BseXI	GCAGC	4 cut(s)	135, 265, 528, 582
BsgI	GTGCAG	1 cut(s)	451
BsiSI	CCGG	1 cut(s)	208
BslFI	GGGAC	1 cut(s)	408
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmAI	GTCTC	4 cut(s)	34, 240, 414, 485
BsmFI	GGGAC	1 cut(s)	408
BsmI	GAATGC	1 cut(s)	159
Bso31I	GGTCTC	2 cut(s)	34, 240
Bsp119I	TTCGAA	1 cut(s)	330
Bsp143I	GATC	3 cut(s)	28, 184, 434
BspACI	CCGC	1 cut(s)	232
BspCNI	CTCAG	2 cut(s)	37, 262
BspHI	TCATGA	1 cut(s)	370
BspLI	GGNNCC	1 cut(s)	30
BspMAI	CTGCAG	3 cut(s)	125, 283, 546
BspPI	GGATC	3 cut(s)	23, 36, 179
BspT104I	TTCGAA	1 cut(s)	330
BspTNI	GGTCTC	2 cut(s)	34, 240
BsrDI	GCAATG	1 cut(s)	304
BssECI	CCNNGG	4 cut(s)	35, 44, 45, 208
BssMI	GATC	3 cut(s)	28, 184, 434
BssT1I	CCWWGG	1 cut(s)	35
Bst2UI	CCWGG	2 cut(s)	46, 611
Bst4CI	ACNGT	2 cut(s)	198, 422
BstAPI	GCANNNNNTGC	1 cut(s)	278
BstBI	TTCGAA	1 cut(s)	330
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	2 cut(s)	24, 249
BstHHI	GCGC	3 cut(s)	77, 128, 311
BstKTI	GATC	3 cut(s)	31, 187, 437
BstMAI	GTCTC	4 cut(s)	34, 240, 414, 485
BstMBI	GATC	3 cut(s)	28, 184, 434
BstMWI	GCNNNNNNNGC	5 cut(s)	115, 129, 278, 308, 315
BstNI	CCWGG	2 cut(s)	46, 611
BstSCI	CCNGG	3 cut(s)	44, 207, 609
BstSFI	CTRYAG	4 cut(s)	121, 194, 279, 542
BstV1I	GCAGC	4 cut(s)	135, 265, 528, 582
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	1 cut(s)	480
Cac8I	GCNNGC	1 cut(s)	130
CaiI	CAGNNNCTG	1 cut(s)	278
CciI	TCATGA	1 cut(s)	370
CfoI	GCGC	3 cut(s)	77, 128, 311
CseI	GACGC	1 cut(s)	165
CspCI	CAANNNNNGTGG	2 cut(s)	368, 403
CviAII	CATG	2 cut(s)	371, 458
DdeI	CTNAG	2 cut(s)	24, 249
DpnI	GATC	3 cut(s)	30, 186, 436
DpnII	GATC	3 cut(s)	28, 184, 434
Eco130I	CCWWGG	1 cut(s)	35
Eco31I	GGTCTC	2 cut(s)	34, 240
EcoRI	GAATTC	1 cut(s)	326
EcoRII	CCWGG	2 cut(s)	44, 609
EcoT14I	CCWWGG	1 cut(s)	35
EcoT22I	ATGCAT	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	35
FaeI	CATG	2 cut(s)	374, 461
FaiI	YATR	7 cut(s)	53, 89, 372, 392, 455, 459, 476
FaqI	GGGAC	1 cut(s)	408
FatI	CATG	2 cut(s)	370, 457
FblI	GTMKAC	1 cut(s)	444
Fnu4HI	GCNGC	4 cut(s)	124, 279, 542, 596
Fsp4HI	GCNGC	4 cut(s)	124, 279, 542, 596
FspBI	CTAG	1 cut(s)	215
FspI	TGCGCA	1 cut(s)	310
GlaI	GCGC	3 cut(s)	76, 127, 310
GluI	GCNGC	4 cut(s)	124, 279, 542, 596
HapII	CCGG	1 cut(s)	208
HgaI	GACGC	1 cut(s)	165
HhaI	GCGC	3 cut(s)	77, 128, 311
Hin1II	CATG	2 cut(s)	374, 461
Hin6I	GCGC	3 cut(s)	75, 126, 309
HinP1I	GCGC	3 cut(s)	75, 126, 309
HindIII	AAGCTT	1 cut(s)	130
HinfI	GANTC	3 cut(s)	5, 148, 600
HpaII	CCGG	1 cut(s)	208
HphI	GGTGA	2 cut(s)	6, 73
Hpy166II	GTNNAC	1 cut(s)	445
Hpy188I	TCNGA	2 cut(s)	165, 204
Hpy188III	TCNNGA	6 cut(s)	26, 138, 256, 371, 515, 569
Hpy8I	GTNNAC	1 cut(s)	445
Hpy99I	CGWCG	2 cut(s)	156, 159
HpyAV	CCTTC	2 cut(s)	88, 326
HpyCH4III	ACNGT	2 cut(s)	198, 422
HpyCH4V	TGCA	8 cut(s)	123, 281, 302, 390, 432, 457, 485, 544
HpyF10VI	GCNNNNNNNGC	5 cut(s)	115, 129, 278, 308, 315
HpyF3I	CTNAG	2 cut(s)	24, 249
Hsp92II	CATG	2 cut(s)	374, 461
HspAI	GCGC	3 cut(s)	75, 126, 309
Kzo9I	GATC	3 cut(s)	28, 184, 434
LpnPI	CCDG	7 cut(s)	11, 31, 58, 158, 192, 221, 596
Lsp1109I	GCAGC	4 cut(s)	135, 265, 528, 582
LweI	GCATC	2 cut(s)	533, 587
MaeI	CTAG	1 cut(s)	215
MaeIII	GTNAC	2 cut(s)	95, 244
MalI	GATC	3 cut(s)	30, 186, 436
MboI	GATC	3 cut(s)	28, 184, 434
MboII	GAAGA	2 cut(s)	271, 572
MflI	RGATCY	1 cut(s)	28
MluCI	AATT	3 cut(s)	326, 510, 564
MnlI	CCTC	3 cut(s)	95, 329, 607
Mph1103I	ATGCAT	1 cut(s)	459
MroXI	GAANNNNTTC	1 cut(s)	564
MseI	TTAA	1 cut(s)	228
MspI	CCGG	1 cut(s)	208
MspR9I	CCNGG	3 cut(s)	46, 209, 611
Mva1269I	GAATGC	1 cut(s)	159
MvaI	CCWGG	2 cut(s)	46, 611
MwoI	GCNNNNNNNGC	5 cut(s)	115, 129, 278, 308, 315
NciI	CCSGG	1 cut(s)	209
NdeII	GATC	3 cut(s)	28, 184, 434
NlaIII	CATG	2 cut(s)	374, 461
NlaIV	GGNNCC	1 cut(s)	30
NsbI	TGCGCA	1 cut(s)	310
NsiI	ATGCAT	1 cut(s)	459
NspV	TTCGAA	1 cut(s)	330
PagI	TCATGA	1 cut(s)	370
PasI	CCCWGGG	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	1 cut(s)	336
PctI	GAATGC	1 cut(s)	159
PdmI	GAANNNNTTC	1 cut(s)	564
PfeI	GAWTC	3 cut(s)	5, 148, 600
PfoI	TCCNGGA	1 cut(s)	609
PkrI	GCNGC	4 cut(s)	125, 280, 543, 597
Psp6I	CCWGG	2 cut(s)	44, 609
PspGI	CCWGG	2 cut(s)	44, 609
PspN4I	GGNNCC	1 cut(s)	30
PstI	CTGCAG	3 cut(s)	125, 283, 546
PstNI	CAGNNNCTG	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	28
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	4 cut(s)	124, 279, 542, 596
Sau3AI	GATC	3 cut(s)	28, 184, 434
ScrFI	CCNGG	3 cut(s)	46, 209, 611
SetI	ASST	5 cut(s)	14, 37, 134, 147, 280
SfaNI	GCATC	2 cut(s)	533, 587
SfcI	CTRYAG	4 cut(s)	121, 194, 279, 542
SfuI	TTCGAA	1 cut(s)	330
SmlI	CTYRAG	1 cut(s)	136
SmoI	CTYRAG	1 cut(s)	136
Sse9I	AATT	3 cut(s)	326, 510, 564
SsiI	CCGC	1 cut(s)	232
SspMI	CTAG	1 cut(s)	215
StyD4I	CCNGG	3 cut(s)	44, 207, 609
StyI	CCWWGG	1 cut(s)	35
TaaI	ACNGT	2 cut(s)	198, 422
TaqI	TCGA	2 cut(s)	151, 330
TasI	AATT	3 cut(s)	326, 510, 564
TfiI	GAWTC	3 cut(s)	5, 148, 600
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	487
TseI	GCWGC	4 cut(s)	123, 278, 541, 595
TspDTI	ATGAA	2 cut(s)	282, 522
TspRI	CASTG	1 cut(s)	487
XapI	RAATTY	3 cut(s)	326, 510, 564
XmiI	GTMKAC	1 cut(s)	444
XmnI	GAANNNNTTC	1 cut(s)	564
XspI	CTAG	1 cut(s)	215
Zsp2I	ATGCAT	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.