Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000472.1

Orthogroup ID

OG0018009

Physical Location & Seq

Genomic Coordinates Forward (+)

58134 .. 58715

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000472.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atgacatccccaggttctcgtcatccggatacgtggctcattgcttctgttgctatcctctgcacttttactgtcatcttcagttattgcaagatactgaaacggtgcaatacaagatccaatccaaaccacagacgtacccttcagaacgagaccaacgcagatgatccatctctgcagtttcaaagccaaggactagatttcgcaatcatccggtctctacccataactcagtttaagaagagaagtgtagcagaagagcacgaaagcaacacagactgtccggtatgcttgggtgaatttgaagaaggggaatggctaagacatctacccaaatgcaatcatgcattccacatatcttgcatcgacacttggtttgtggctcactcaaattgccccttatgcagatcagaagtctatgattttatccaggattgtcctattcctatgcacactctgttagagacactgagggaaagtgtaattgaagaaagagcgttacacttccacatgctgcgctctgcggtcttggagaactcaccatttggacgtgaagcaagattcagctacggcaacgtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

193

Amino Acids

22.21

Weight (kDa)

6.19

Isoelectric Point (pI)

64.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018009)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34900
malus_domestica	MD11G1114600.v1.1
prunus_persica	Prupe.6G085400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0062771
rosa_laevigata	RLG00000035576
rosa_multiflora	Rmu_ssc0000472.1_g000010
rosa_roxburghii	Rroxscaffold_1G00017850
rosa_rugosa	Rorug05G0351600
rosa_samantha	Rh5AG412500 Rh5DG440300
rosa_wichuraiana	Rw5G038770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	25
AciI	CCGC	1 cut(s)	524
AclWI	GGATC	2 cut(s)	111, 161
AcsI	RAATTY	1 cut(s)	299
AcuI	CTGAAG	2 cut(s)	64, 128
AfaI	GTAC	1 cut(s)	139
AflIII	ACRYGT	1 cut(s)	576
AgsI	TTSAA	3 cut(s)	185, 305, 488
AjiI	CACGTC	1 cut(s)	551
AjnI	CCWGG	2 cut(s)	10, 429
AluBI	AGCT	1 cut(s)	567
AluI	AGCT	1 cut(s)	567
Alw21I	GWGCWC	1 cut(s)	264
Alw26I	GTCTC	3 cut(s)	146, 222, 458
AlwI	GGATC	2 cut(s)	111, 161
Aor13HI	TCCGGA	1 cut(s)	25
ApeKI	GCWGC	1 cut(s)	514
ApoI	RAATTY	1 cut(s)	299
ArsI	GACNNNNNNTTYG	2 cut(s)	359, 391
AspLEI	GCGC	1 cut(s)	519
AsuHPI	GGTGA	2 cut(s)	308, 531
BaeI	ACNNNNGTAYC	2 cut(s)	121, 154
Bbv12I	GWGCWC	1 cut(s)	264
BbvI	GCAGC	1 cut(s)	501
BccI	CCATC	1 cut(s)	178
BciT130I	CCWGG	2 cut(s)	12, 431
BciVI	GTATCC	1 cut(s)	22
BcoDI	GTCTC	3 cut(s)	146, 222, 458
BfaI	CTAG	1 cut(s)	197
BfmI	CTRYAG	1 cut(s)	176
BfuI	GTATCC	1 cut(s)	22
BisI	GCNGC	1 cut(s)	515
BlsI	GCNGC	1 cut(s)	516
Bme1390I	CCNGG	2 cut(s)	12, 431
BmgBI	CACGTC	1 cut(s)	551
BmrFI	CCNGG	2 cut(s)	12, 431
BmsI	GCATC	1 cut(s)	372
BsaAI	YACGTR	1 cut(s)	33
BsaI	GGTCTC	2 cut(s)	146, 222
BsaJI	CCNNGG	2 cut(s)	10, 190
BsaWI	WCCGGW	3 cut(s)	25, 213, 283
Bse3DI	GCAATG	1 cut(s)	39
BseAI	TCCGGA	1 cut(s)	25
BseBI	CCWGG	2 cut(s)	12, 431
BseDI	CCNNGG	2 cut(s)	10, 190
BseGI	GGATG	3 cut(s)	5, 22, 210
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	2 cut(s)	245, 461
BseXI	GCAGC	1 cut(s)	501
BsgI	GTGCAG	1 cut(s)	46
BsiHKAI	GWGCWC	1 cut(s)	264
BsiSI	CCGG	3 cut(s)	26, 214, 284
BsmAI	GTCTC	3 cut(s)	146, 222, 458
BsmI	GAATGC	1 cut(s)	347
Bso31I	GGTCTC	2 cut(s)	146, 222
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp13I	TCCGGA	1 cut(s)	25
Bsp143I	GATC	3 cut(s)	116, 166, 407
BspACI	CCGC	1 cut(s)	524
BspCNI	CTCAG	2 cut(s)	244, 462
BspEI	TCCGGA	1 cut(s)	25
BspMAI	CTGCAG	1 cut(s)	180
BspPI	GGATC	2 cut(s)	111, 161
BspQI	GCTCTTC	1 cut(s)	252
BspTNI	GGTCTC	2 cut(s)	146, 222
BsrDI	GCAATG	1 cut(s)	39
BssECI	CCNNGG	2 cut(s)	10, 190
BssMI	GATC	3 cut(s)	116, 166, 407
BssT1I	CCWWGG	1 cut(s)	190
Bst2UI	CCWGG	2 cut(s)	12, 431
Bst4CI	ACNGT	3 cut(s)	73, 105, 281
Bst6I	CTCTTC	2 cut(s)	236, 252
BstBAI	YACGTR	1 cut(s)	33
BstDEI	CTNAG	3 cut(s)	231, 320, 470
BstF5I	GGATG	3 cut(s)	5, 22, 210
BstHHI	GCGC	1 cut(s)	519
BstKTI	GATC	3 cut(s)	119, 169, 410
BstMAI	GTCTC	3 cut(s)	146, 222, 458
BstMBI	GATC	3 cut(s)	116, 166, 407
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 402
BstNI	CCWGG	2 cut(s)	12, 431
BstNSI	RCATGY	1 cut(s)	514
BstSCI	CCNGG	2 cut(s)	10, 429
BstSFI	CTRYAG	1 cut(s)	176
BstV1I	GCAGC	1 cut(s)	501
BstX2I	RGATCY	1 cut(s)	116
BstYI	RGATCY	1 cut(s)	116
BsuI	GTATCC	1 cut(s)	22
BtrI	CACGTC	1 cut(s)	551
BtsCI	GGATG	3 cut(s)	5, 22, 210
BtsIMutI	CAGTG	1 cut(s)	467
CfoI	GCGC	1 cut(s)	519
Csp6I	GTAC	1 cut(s)	138
CspCI	CAANNNNNGTGG	2 cut(s)	341, 376
CviAII	CATG	2 cut(s)	344, 511
CviJI	RGCY	5 cut(s)	37, 189, 319, 383, 567
CviKI_1	RGCY	5 cut(s)	37, 189, 319, 383, 567
CviQI	GTAC	1 cut(s)	138
DdeI	CTNAG	3 cut(s)	231, 320, 470
DpnI	GATC	3 cut(s)	118, 168, 409
DpnII	GATC	3 cut(s)	116, 166, 407
Eam1104I	CTCTTC	2 cut(s)	236, 252
EarI	CTCTTC	2 cut(s)	236, 252
Eco130I	CCWWGG	1 cut(s)	190
Eco31I	GGTCTC	2 cut(s)	146, 222
Eco57I	CTGAAG	2 cut(s)	64, 128
EcoRII	CCWGG	2 cut(s)	10, 429
EcoT14I	CCWWGG	1 cut(s)	190
EcoT22I	ATGCAT	1 cut(s)	349
ErhI	CCWWGG	1 cut(s)	190
FaeI	CATG	2 cut(s)	347, 514
FaiI	YATR	8 cut(s)	227, 289, 345, 356, 403, 420, 449, 512
FatI	CATG	2 cut(s)	343, 510
Fnu4HI	GCNGC	1 cut(s)	515
FokI	GGATG	2 cut(s)	9, 197
Fsp4HI	GCNGC	1 cut(s)	515
FspBI	CTAG	1 cut(s)	197
GlaI	GCGC	1 cut(s)	518
GluI	GCNGC	1 cut(s)	515
HapII	CCGG	3 cut(s)	26, 214, 284
HhaI	GCGC	1 cut(s)	519
Hin1II	CATG	2 cut(s)	347, 514
Hin6I	GCGC	1 cut(s)	517
HinP1I	GCGC	1 cut(s)	517
HinfI	GANTC	1 cut(s)	561
HpaII	CCGG	3 cut(s)	26, 214, 284
HphI	GGTGA	2 cut(s)	308, 531
Hpy188I	TCNGA	2 cut(s)	147, 412
Hpy188III	TCNNGA	1 cut(s)	26
HpyAV	CCTTC	2 cut(s)	152, 302
HpyCH4III	ACNGT	3 cut(s)	73, 105, 281
HpyCH4IV	ACGT	4 cut(s)	32, 136, 550, 576
HpyCH4V	TGCA	9 cut(s)	63, 90, 108, 178, 339, 347, 363, 405, 451
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 402
HpyF3I	CTNAG	3 cut(s)	231, 320, 470
HpySE526I	ACGT	4 cut(s)	32, 136, 550, 576
Hsp92II	CATG	2 cut(s)	347, 514
HspAI	GCGC	1 cut(s)	517
Kpn2I	TCCGGA	1 cut(s)	25
Kzo9I	GATC	3 cut(s)	116, 166, 407
LguI	GCTCTTC	1 cut(s)	252
LpnPI	CCDG	6 cut(s)	24, 39, 227, 297, 416, 443
Lsp1109I	GCAGC	1 cut(s)	501
LweI	GCATC	1 cut(s)	372
MaeI	CTAG	1 cut(s)	197
MaeII	ACGT	4 cut(s)	32, 136, 550, 576
MaeIII	GTNAC	1 cut(s)	498
MalI	GATC	3 cut(s)	118, 168, 409
MboI	GATC	3 cut(s)	116, 166, 407
MboII	GAAGA	5 cut(s)	70, 253, 269, 317, 500
MflI	RGATCY	1 cut(s)	116
MhlI	GDGCHC	1 cut(s)	264
MluCI	AATT	3 cut(s)	299, 391, 483
MnlI	CCTC	2 cut(s)	68, 465
Mph1103I	ATGCAT	1 cut(s)	349
MroI	TCCGGA	1 cut(s)	25
MseI	TTAA	1 cut(s)	237
MspI	CCGG	3 cut(s)	26, 214, 284
MspR9I	CCNGG	2 cut(s)	12, 431
Mva1269I	GAATGC	1 cut(s)	347
MvaI	CCWGG	2 cut(s)	12, 431
MwoI	GCNNNNNNNGC	2 cut(s)	50, 402
NdeII	GATC	3 cut(s)	116, 166, 407
NlaIII	CATG	2 cut(s)	347, 514
NsiI	ATGCAT	1 cut(s)	349
NspI	RCATGY	1 cut(s)	514
PciSI	GCTCTTC	1 cut(s)	252
PctI	GAATGC	1 cut(s)	347
PfeI	GAWTC	1 cut(s)	561
PfoI	TCCNGGA	1 cut(s)	429
PkrI	GCNGC	1 cut(s)	516
Ppu21I	YACGTR	1 cut(s)	33
Psp6I	CCWGG	2 cut(s)	10, 429
PspGI	CCWGG	2 cut(s)	10, 429
PstI	CTGCAG	1 cut(s)	180
PsuI	RGATCY	1 cut(s)	116
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
SapI	GCTCTTC	1 cut(s)	252
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	1 cut(s)	515
Sau3AI	GATC	3 cut(s)	116, 166, 407
ScrFI	CCNGG	2 cut(s)	12, 431
SduI	GDGCHC	1 cut(s)	264
SetI	ASST	6 cut(s)	16, 35, 139, 553, 569, 579
SfaNI	GCATC	1 cut(s)	372
SfcI	CTRYAG	1 cut(s)	176
Sse9I	AATT	3 cut(s)	299, 391, 483
SsiI	CCGC	1 cut(s)	524
SspMI	CTAG	1 cut(s)	197
StyD4I	CCNGG	2 cut(s)	10, 429
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	3 cut(s)	73, 105, 281
TaiI	ACGT	4 cut(s)	35, 139, 553, 579
TaqI	TCGA	1 cut(s)	366
TasI	AATT	3 cut(s)	299, 391, 483
TfiI	GAWTC	1 cut(s)	561
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	1 cut(s)	474
TseI	GCWGC	1 cut(s)	514
TspRI	CASTG	1 cut(s)	474
XapI	RAATTY	1 cut(s)	299
XceI	RCATGY	1 cut(s)	514
XspI	CTAG	1 cut(s)	197
Zsp2I	ATGCAT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.