Rorug05G0351600

Belongs to the MIP aquaporin (TC 1.A.8) family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
43862599 .. 43868252
5654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0351600.1

Sequence Viewer

Length: 3417 bp
ATGGAAGAGGGCAAACATAAGTCGAGGAAGGAGGGAGAATCCAAGAGGAGTCACCGAGATCGGGATCGCGAGAAGGAGAGCAATAAACAGAAACACAGGGATAAAGATAGAGATAAGAGAGACCGTGGTGCTCGACGTTCTGTGAAAGAGAAGAGTTATGATTCTGAAGAGAGGTATGATAAAGAGAAGCATCGAGACAAGGACAGTGATAGGGCGCGTAGCCGAGATGATGAAAGAAAGAAAACAAGAGAAAGGAAGAGGGATAACAATAAAGAGAAGGACAAGGAGAGGGAGGGGGAGAAAGACAAAGAAAAGGAGAAGAGGGAGAGGGTTAGAGAGAAGGAAAGAGAAGGAGAAAGGGACAAGGAGAGGGAGAGGGAGAGGGAGAGAAGAGAACGAGAAAGAGAGGTTGAAGATAGGGTGAGAGAGAAGAGGGAGCATGAGAGGGAAAATGATAGAGATCGAGAGAGGAGGATAAGAGAGAGGGAGAGGCATAGGGATGCTGATACTGATGATATTGATGATCATGTTAGGGATCGTGATAGGAAGCGGCATAAGAATGATAAAAATGAGTACAAGGAGAAGGATCGAGAAAGGAGTAGTAGTAGGGTAAAGACACATATGGATAATGGAGATGAGAGCCCACAAAAGAAAAGTGATGAAGATTCAGTTAAGAAGCCAACCCGTGAGGAGGAGTTAGAGAATGAACAAAGGAAATTGGATGAGGAAATGGAAAAACGAAGGAGGAGAGTTCAGGAGTGGCAAGAGTTAAAGAGAAAGAAGGAAGAAGATGAGAGAGATCATGGGGAAGGGCATGTTGATGAACCTATGTCCAGAAAGACCTGGACTCTTGAAGGAGAATCTGATGACGAAGAAGTTCATCCCTCAGGGACATCAGAGCCAGGTACAAACCTCAATGGAGAAGGCAATCTTATTGACAAAGAAGATGGAGATTTCATGGTAGATTCTGACAACGAAACAGCTGCACTTGCTTTACCAAATGGAGCTGATAACGCTAGCGGGGATGAGGAGACTGATCCATTAGATGCTTTTATGAATTCTATGGTATTGCCTGAAGTTAAAAAGCTGGACAGTGCTGCAGACGCATCAATTTCTGATGCGAAGAATGATAAAAAGGATGGTCGAAGTAATGGTGAACAGCAGAGGAGAGGTTTTAATAAATCTATGGGAAGAATTATTCCTGGGGAGGATTCGGATTCCGATTTTGGGGACCTTGAGAATGATGAAAATGTTTTAGAAGATGAAAATGACGATGAGTTCATCAAAAGGGTGAAAAAAACAAAAGCTGAGAAACTTTCTTTAGTTGATCACTCTAAGATAGATTATGAACCATTCCGCAAAAATTTTTATATTGAGGTGAAGGAGATCTCAAGGATGAGTCCAGAAGAGGTGGGTGCATGCCGGAAAGAATTGGAATTGAAGATACACGGTAAGGATGTGCCGAAGCCCATTAAGACCTGGCATCAAACTGGACTTACCAGTAAAATTTTGGAAATAATAAAGAAACTGAACTTTGAAAAGCCTATGCCAATTCAGGCTCAGGCGTTACCTGTAGTTATGAGTGGTCGAGACTGCATCGGTGTTGGGAAAACTGGATCAGGGAAAACCCTTGCATTTGTTCTACCAATGCTGAGGCATATCAAGGATCAGCCACCCGTAGAAGCTGGAGATGGGCCTATTGGGCTTATAATGGCACCAACGAGGGAACTTGTTCAGCAGATCCACAGCGATATTAAAAGGTTTGCCAAGGTACTGGGTCTCAGGTGTGTGCCTGTATATGGAGGTTCTGGTGTTGCTCAACAGATTAGTGAATTAAAGCGGGGTACTGAAATTGTTGTATGCACCCCTGGTAGGATGATTGACATACTTTGCACAAGTGGAGGGAAAATAACAAATCTGCGTAGAGTAACTTTTTTGGTCATGGATGAAGCTGATCGAATGTTTGACATGGGGTTTGAACCTCAAATCACTAGAATTGTTCAAAATATTCGGCCAGGTCGTCAAACTGTTTTGTTTTCAGCCACTTTCCCTCGCCAGGTTGAAGTCTTGGCGCGTAAAGTGTTGGACAAACCTGTGGAAATACAGGTTGGTGGCAGGAGTGTTGTGAATAAGGACATAATGCAAATGGTTGAAATGAGGCAGGAAAATGAAAGATTCCTGAGATTGTTAGAGTTGCTCGGTGAATGGAATGAGAAAGGTAAGATTTTGATATTTGTCCAGTCCCAGGACAAATGTGATGCTTTGTTCCGGGATCTGATTAGGCATGGATATGCTTGTCTCTCACTTCATGGGGCCAAAGATCAAACAGATCGTGAGTCCACAATATCTGATTTTAAGAGTGATGTTTGTAATTTGTTGATTGCAACAAGTGTTGCTGCCAGAGGATTAGATGTCAAGGAGCTTGAACTGGTGATCAACTTTCATGTCCCAAATCATTACGAGGACTATGTACACCGTGTTGGACGTACAGGCCGAGCTGGTCGGAAAGGATGTGCTATAACGTTTATCTCTGAGGAAGATGCTAGATATGCTCCAGATCTTGTTAAAGCATTGGAACTTTCTGAGCAAGTTGTTCCGGATGACCTGAAATCTCTTGCTGATAATTTCATGGCAAAAGTAACTCAGGGACTCGAGCAAGCCCATGGGACTGGTTATGGAGGAAGTGGTTTTAAATTTAATGAGGAGGAAGATGAAGTGAGGAGAGCGGCAAAGAAAGCTCAGGCTAAAGAATATGGTTTTGAGGATGACAAGTCTGATTCAGAAGATGAAGATGAAGGTATCCGAAAGGCAGGGGGCGACATCTCTCAGCAGGCTGCCCTTGCTCAGATAGCAGCTATTACTGCTGCCTCCAAAGCTAGTACAGCCTCAATGCAGACCCCTGCCTCTGCTGCCCAACCGCTTCCCAACGGTGGACTGTCTGTTTCTCTTCCAGGTGTCCTTGGTCAAGCATTACCAGGAACAGCATCAGTTTTCCCTGGGACTGGTTTGCCTCTTGCTAGCAATGACGGGGCAGCTCGGGCTGCTGCGATTGCTGCAGCCATGAACTTGCAGCATAACCTGGCAAAGATTCAAGCTGATGCAATGCCTGAACATTATGAAGCAGAGTTAGAGATAAATGATTTTCCTCAGAATGCTAGATGGAAGGTTACCCACAAGGAAACTTGGGGTGCCATATCAGATTGGACTGGAGCAGCCATCACCACCAGGGGTCAGTATTTCCCACCTGGGAAGGTTGCAGGACCTGGAGATCGCAAGCTCTACTTGTTTATCGAGGGCCCTACTGAACAGTCTGTCAAGAGAGCTAAATCGGAGTTAAAGCGGGTTTTGGAAGACATCTCAAATCATGCATTCTCACTTCCTGGTGGAGCTCAGCAAGGCAGATATCAAGTTATATAA

Protein Analysis

1138

Amino Acids

129.33

Weight (kDa)

5.92

Isoelectric Point (pI)

42.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 517 - 688 1.4e-48 DEAD/DEAH box helicase
Helicase_C PF00271 727 - 834 2.6e-28 Helicase conserved C-terminal domain
KH_12 PF23469 1040 - 1117 1.2e-14 KH-domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000067)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g01690 FvH4_6g01690 FvH4_7g11151 FvH4_7g11160 FvH4_7g11570 FvH4_7g17700 FvH4_7g26071 FvH4_7g28510 FvH4_7g28520 FvH4_7g28530 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550
malus_domestica MD00G1020300.v1.1 MD00G1020400.v1.1 MD00G1020500.v1.1 MD00G1020700.v1.1 MD00G1021100.v1.1 MD00G1131100.v1.1 MD01G1188900.v1.1 MD01G1189000.v1.1 MD01G1189200.v1.1 MD01G1190100.v1.1 MD01G1190300.v1.1 MD01G1190500.v1.1 MD01G1190700.v1.1 MD01G1191400.v1.1 MD02G1260000.v1.1 MD02G1260200.v1.1 MD02G1260400.v1.1 MD03G1202400.v1.1 MD04G1022500.v1.1 MD04G1022700.v1.1 MD04G1200400.v1.1 MD07G1015300.v1.1 MD07G1015400.v1.1 MD07G1141800.v1.1 MD07G1242100.v1.1 MD07G1242500.v1.1 MD07G1243000.v1.1 MD07G1243500.v1.1 MD07G1244000.v1.1 MD07G1244600.v1.1 MD07G1245100.v1.1 MD07G1245600.v1.1 MD07G1246000.v1.1 MD07G1246200.v1.1 MD07G1260000.v1.1 MD07G1260700.v1.1 MD07G1261100.v1.1 MD08G1229600.v1.1 MD08G1229700.v1.1 MD08G1230200.v1.1 MD09G1186700.v1.1 MD09G1186800.v1.1 MD17G1208600.v1.1
pyrus_communis pycom01g20080 pycom01g20090 pycom01g20120 pycom01g20130 pycom01g20160 pycom01g20200 pycom01g20210 pycom01g20250 pycom02g22140 pycom02g22170 pycom02g22200 pycom02g22220 pycom02g22230 pycom03g15410 pycom03g15420 pycom04g01960 pycom04g01970 pycom07g21840 pycom07g21930 pycom07g21960 pycom07g22000 pycom07g23350 pycom07g23370 pycom07g23440 pycom07g23450 pycom07g23460 pycom07g23500 pycom07g23530 pycom07g23590 pycom07g23660 pycom07g23670 pycom07g23690 pycom07g23710 pycom07g23760 pycom07g23770 pycom07g23780 pycom07g23800 pycom07g23820 pycom08g19980 pycom08g19990 pycom08g20010 pycom08g20020 pycom17g04750 pycom17g21140 pycom17g21200 pycom17g21250 pycom17g21270 pycom17g21290 pycom17g21340 pycom17g21350
rosa_chinensis RchiOBHm_Chr1g0335971 RchiOBHm_Chr1g0349181 RchiOBHm_Chr1g0349211 RchiOBHm_Chr1g0349221 RchiOBHm_Chr1g0350001 RchiOBHm_Chr1g0372491 RchiOBHm_Chr1g0372501 RchiOBHm_Chr1g0372511 RchiOBHm_Chr1g0372541 RchiOBHm_Chr1g0375911 RchiOBHm_Chr1g0375921 RchiOBHm_Chr1g0375931 RchiOBHm_Chr1g0375941 RchiOBHm_Chr1g0375951 RchiOBHm_Chr3g0454321 RchiOBHm_Chr6g0266131 RchiOBHm_Chr6g0270371 RchiOBHm_Chr6g0270381 RchiOBHm_Chr6g0270391 RchiOBHm_Chr7g0232121 RchiOBHm_Chr7g0232831
rosa_laevigata RLG00000008620 RLG00000009600 RLG00000010114 RLG00000020933 RLG00000022777 RLG00000022778 RLG00000025461 RLG00000025462 RLG00000026641 RLG00000026642 RLG00000026643 RLG00000026894 RLG00000028442 RLG00000028506 RLG00000028510 RLG00000028563 RLG00000028564 RLG00000028570 RLG00000028574 RLG00000028577 RLG00000028579 RLG00000028580 RLG00000028582 RLG00000028584 RLG00000028588 RLG00000028591 RLG00000028592 RLG00000028596
rosa_multiflora Rmu_co8179714.1_g000001 Rmu_co8285207.1_g000001 Rmu_co8469031.1_g000001 Rmu_co8499245.1_g000002 Rmu_sc0000616.1_g000011 Rmu_sc0000827.1_g000022 Rmu_sc0000827.1_g000025 Rmu_sc0000827.1_g000034 Rmu_sc0000827.1_g000036 Rmu_sc0001340.1_g000001 Rmu_sc0001909.1_g000018 Rmu_sc0002863.1_g000018 Rmu_sc0002863.1_g000031 Rmu_sc0002914.1_g000028 Rmu_sc0002914.1_g000029 Rmu_sc0002914.1_g000032 Rmu_sc0003385.1_g000001 Rmu_sc0003385.1_g000008 Rmu_sc0003385.1_g000009 Rmu_sc0003385.1_g000013 Rmu_sc0003385.1_g000015 Rmu_sc0003385.1_g000025 Rmu_sc0003441.1_g000069 Rmu_sc0003674.1_g000007 Rmu_sc0003674.1_g000011 Rmu_sc0004618.1_g000001 Rmu_sc0005410.1_g000018 Rmu_sc0006415.1_g000005 Rmu_sc0006415.1_g000006 Rmu_sc0006415.1_g000014 Rmu_sc0006415.1_g000018 Rmu_sc0009606.1_g000011 Rmu_sc0011111.1_g000006 Rmu_sc0011709.1_g000003 Rmu_sc0011709.1_g000006 Rmu_sc0014584.1_g000002 Rmu_sc0015952.1_g000001 Rmu_sc0019347.1_g000001 Rmu_sc0019347.1_g000002 Rmu_sc0019347.1_g000003 Rmu_sc0023808.1_g000001 Rmu_sc0032581.1_g000001 Rmu_sc0034725.1_g000002 Rmu_sc0035038.1_g000001 Rmu_ssc0000018.1_g000005 Rmu_ssc0000018.1_g000006 Rmu_ssc0000116.1_g000002 Rmu_ssc0000150.1_g000009 Rmu_ssc0000150.1_g000011 Rmu_ssc0000472.1_g000013
rosa_roxburghii Rroxscaffold_165G00437140 Rroxscaffold_174G00435220 Rroxscaffold_3G00228770 Rroxscaffold_3G00228780 Rroxscaffold_4G00282480 Rroxscaffold_4G00282490 Rroxscaffold_4G00282510 Rroxscaffold_4G00282520 Rroxscaffold_4G00282540 Rroxscaffold_4G00284870 Rroxscaffold_4G00295380 Rroxscaffold_4G00305140 Rroxscaffold_4G00305150 Rroxscaffold_4G00305210 Rroxscaffold_4G00305760 Rroxscaffold_4G00305810 Rroxscaffold_4G00305840 Rroxscaffold_4G00305900 Rroxscaffold_4G00305920 Rroxscaffold_4G00305960 Rroxscaffold_4G00305980 Rroxscaffold_4G00305990 Rroxscaffold_4G00306020 Rroxscaffold_4G00325020 Rroxscaffold_5G00352760 Rroxscaffold_6G00425210 Rroxscaffold_7G00201950 Rroxscaffold_7G00214940
rosa_rugosa Rorug01G0048900 Rorug01G0049000 Rorug01G0201400 Rorug01G0201700 Rorug01G0202000 Rorug01G0207700 Rorug01G0207800 Rorug01G0207900 Rorug01G0286300 Rorug01G0286400 Rorug01G0286500 Rorug01G0372500 Rorug01G0372600 Rorug01G0392300 Rorug01G0392400 Rorug01G0392500 Rorug01G0392600 Rorug01G0392700 Rorug01G0392800 Rorug01G0392800 Rorug01G0392900 Rorug01G0393000 Rorug02G0654200 Rorug02G0654200 Rorug04G0027700 Rorug05G0351300 Rorug05G0351400 Rorug05G0351600 Rorug05G0406600 Rorug07G0269500 Rorug07G0276200 Rorug07G0276200
rosa_samantha Rh1AG224200 Rh1AG229900 Rh1AG297600 Rh1AG297700 Rh1AG381000 Rh1AG404200 Rh1AG404300 Rh1AG404400 Rh1BG184300 Rh1BG367600 Rh1BG367900 Rh1BG368000 Rh1CG203700 Rh1CG208900 Rh1CG279000 Rh1CG279100 Rh1CG357900 Rh1CG380500 Rh1CG380700 Rh1CG380800 Rh1CG380900 Rh1DG214000 Rh3AG058200 Rh3BG059900 Rh6BG145500 Rh6BG292400 Rh6DG129800 Rh7AG423900 Rh7AG431300 Rh7BG249300 Rh7BG404200 Rh7CG049400 Rh7CG444300 Rh7CG450000 Rh7DG420600
rosa_wichuraiana Rw0G000410 Rw0G007570 Rw0G011870 Rw1G018580 Rw1G018590 Rw1G018610 Rw1G018620 Rw1G018640 Rw1G019140 Rw1G019150 Rw1G019260 Rw1G019900 Rw1G026290 Rw1G026300 Rw1G026870 Rw1G026890 Rw1G033510 Rw1G035810 Rw1G035830 Rw1G035840 Rw1G035850 Rw1G035860 Rw3G004460 Rw5G038750 Rw7G035060 Rw7G035610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1709
AccB1I GGYRCC 2 cut(s) 1714, 3188
AccBSI CCGCTC 1 cut(s) 2726
AccII CGCG 3 cut(s) 69, 217, 2074
AccIII TCCGGA 1 cut(s) 2596
AciI CCGC 7 cut(s) 550, 1020, 1357, 1840, 2726, 2918, 3340
AclI AACGTT 1 cut(s) 2522
AclWI GGATC 8 cut(s) 72, 543, 594, 1031, 1624, 1674, 1735, 2280
AcoI YGGCCR 1 cut(s) 2012
AcsI RAATTY 4 cut(s) 1057, 1363, 1506, 2693
AcuI CTGAAG 2 cut(s) 186, 1095
AfaI GTAC 7 cut(s) 575, 907, 1773, 1846, 2472, 2488, 2881
AfiI CCNNNNNNNGG 9 cut(s) 61, 691, 1227, 1799, 1872, 2056, 2245, 2930, 3002
AjuI GAANNNNNNNTTGG 2 cut(s) 2091, 2123
Alw21I GWGCWC 2 cut(s) 133, 3391
Alw26I GTCTC 6 cut(s) 114, 189, 1025, 1584, 1784, 2303
AlwI GGATC 8 cut(s) 72, 543, 594, 1031, 1624, 1674, 1735, 2280
AlwNI CAGNNNCTG 1 cut(s) 3263
Ama87I CYCGRG 2 cut(s) 2651, 3036
Aor13HI TCCGGA 1 cut(s) 2596
AoxI GGCC 5 cut(s) 1694, 2012, 2313, 2491, 3295
ApaI GGGCCC 1 cut(s) 3299
ApoI RAATTY 4 cut(s) 1057, 1363, 1506, 2693
ArsI GACNNNNNNTTYG 2 cut(s) 1958, 1990
Asp700I GAANNNNTTC 2 cut(s) 876, 1731
AspLEI GCGC 2 cut(s) 217, 2074
AspS9I GGNCC 6 cut(s) 1231, 1694, 2313, 3260, 3295, 3296
AsuC2I CCSGG 1 cut(s) 2270
AsuHPI GGTGA 8 cut(s) 44, 433, 1166, 1303, 1390, 2213, 2443, 3211
AsuNHI GCTAGC 2 cut(s) 1016, 3017
AvaI CYCGRG 2 cut(s) 2651, 3036
AvaII GGWCC 2 cut(s) 1231, 3260
AxyI CCTNAGG 1 cut(s) 886
BaeGI GKGCMC 1 cut(s) 3299
BanI GGYRCC 2 cut(s) 1714, 3188
BanII GRGCYC 3 cut(s) 644, 3299, 3391
BbsI GAAGAC 1 cut(s) 3357
Bbv12I GWGCWC 2 cut(s) 133, 3391
BbvCI CCTCAGC 1 cut(s) 1652
BccI CCATC 5 cut(s) 941, 1133, 1685, 3153, 3224
BcgI CGANNNNNNTGC 2 cut(s) 965, 999
BciVI GTATCC 1 cut(s) 2810
BclI TGATCA 3 cut(s) 523, 1327, 2433
BcnI CCSGG 1 cut(s) 2270
BcoDI GTCTC 6 cut(s) 114, 189, 1025, 1584, 1784, 2303
BfaI CTAG 6 cut(s) 1017, 1992, 2544, 2877, 3018, 3156
BfmI CTRYAG 3 cut(s) 1098, 1572, 3054
BfuI GTATCC 1 cut(s) 2810
BglI GCCNNNNNGGC 1 cut(s) 1702
BglII AGATCT 2 cut(s) 1386, 2557
BlpI GCTNAGC 1 cut(s) 3390
Bme18I GGWCC 2 cut(s) 1231, 3260
BmeT110I CYCGRG 2 cut(s) 2651, 3036
BmgT120I GGNCC 6 cut(s) 1231, 1694, 2313, 3260, 3295, 3296
BmiI GGNNCC 5 cut(s) 1232, 1716, 2314, 3190, 3297
BmrI ACTGGG 1 cut(s) 1784
BmtI GCTAGC 2 cut(s) 1020, 3021
BmuI ACTGGG 1 cut(s) 1784
BpiI GAAGAC 1 cut(s) 3357
BpmI CTGGAG 4 cut(s) 1707, 2538, 3228, 3285
Bpu10I CCTNAGC 3 cut(s) 1560, 1652, 2739
Bpu1102I GCTNAGC 1 cut(s) 3390
BpuEI CTTGAG 2 cut(s) 1256, 1375
BpuMI CCSGG 1 cut(s) 2270
BsaBI GATNNNNATC 2 cut(s) 63, 459
BsaI GGTCTC 2 cut(s) 114, 1784
BsaWI WCCGGW 1 cut(s) 2596
BsaXI ACNNNNNCTCC 2 cut(s) 589, 619
Bsc4I CCNNNNNNNGG 9 cut(s) 61, 691, 1227, 1799, 1872, 2056, 2245, 2930, 3002
Bse1I ACTGG 9 cut(s) 1495, 1500, 1618, 1779, 2239, 2433, 2674, 3007, 3211
Bse21I CCTNAGG 1 cut(s) 886
Bse3DI GCAATG 2 cut(s) 3028, 3108
Bse8I GATNNNNATC 2 cut(s) 63, 459
BseAI TCCGGA 1 cut(s) 2596
BseJI GATNNNNATC 2 cut(s) 63, 459
BseLI CCNNNNNNNGG 9 cut(s) 61, 691, 1227, 1799, 1872, 2056, 2245, 2930, 3002
BseMI GCAATG 2 cut(s) 3028, 3108
BseNI ACTGG 9 cut(s) 1495, 1500, 1618, 1779, 2239, 2433, 2674, 3007, 3211
BseRI GAGGAG 9 cut(s) 61, 484, 704, 707, 760, 1043, 1180, 2717, 2734
BseSI GKGCMC 1 cut(s) 3299
BsgI GTGCAG 1 cut(s) 969
Bsh1236I CGCG 3 cut(s) 69, 217, 2074
BshFI GGCC 5 cut(s) 1696, 2014, 2315, 2493, 3297
BshNI GGYRCC 2 cut(s) 1714, 3188
BsiHKAI GWGCWC 2 cut(s) 133, 3391
BsiHKCI CYCGRG 2 cut(s) 2651, 3036
BsiSI CCGG 3 cut(s) 1423, 2269, 2597
BslFI GGGAC 8 cut(s) 374, 904, 1244, 2227, 2432, 2661, 2680, 3013
BslI CCNNNNNNNGG 9 cut(s) 61, 691, 1227, 1799, 1872, 2056, 2245, 2930, 3002
BsmAI GTCTC 6 cut(s) 114, 189, 1025, 1584, 1784, 2303
BsmFI GGGAC 8 cut(s) 374, 904, 1244, 2227, 2432, 2661, 2680, 3013
BsmI GAATGC 2 cut(s) 3157, 3368
BsnI GGCC 5 cut(s) 1696, 2014, 2315, 2493, 3297
Bso31I GGTCTC 2 cut(s) 114, 1784
BsoBI CYCGRG 2 cut(s) 2651, 3036
Bsp120I GGGCCC 1 cut(s) 3295
Bsp1286I GDGCHC 4 cut(s) 133, 644, 3299, 3391
Bsp13I TCCGGA 1 cut(s) 2596
Bsp1407I TGTACA 1 cut(s) 2470
Bsp1720I GCTNAGC 1 cut(s) 3390
Bsp19I CCATGG 1 cut(s) 2662
Bsp68I TCGCGA 1 cut(s) 69
BspACI CCGC 7 cut(s) 550, 1020, 1357, 1840, 2726, 2918, 3340
BspANI GGCC 5 cut(s) 1696, 2014, 2315, 2493, 3297
BspEI TCCGGA 1 cut(s) 2596
BspFNI CGCG 3 cut(s) 69, 217, 2074
BspLI GGNNCC 5 cut(s) 1232, 1716, 2314, 3190, 3297
BspMAI CTGCAG 2 cut(s) 1102, 3058
BspOI GCTAGC 2 cut(s) 1020, 3021
BspPI GGATC 8 cut(s) 72, 543, 594, 1031, 1624, 1674, 1735, 2280
BspT107I GGYRCC 2 cut(s) 1714, 3188
BspTNI GGTCTC 2 cut(s) 114, 1784
BsrBI CCGCTC 1 cut(s) 2726
BsrDI GCAATG 2 cut(s) 3028, 3108
BsrGI TGTACA 1 cut(s) 2470
BsrI ACTGG 9 cut(s) 1495, 1500, 1618, 1779, 2239, 2433, 2674, 3007, 3211
BssT1I CCWWGG 3 cut(s) 1767, 2662, 2959
Bst4CI ACNGT 9 cut(s) 125, 206, 1094, 1451, 2029, 2477, 2930, 2937, 3309
Bst6I CTCTTC 8 cut(s) 146, 162, 251, 314, 385, 425, 1401, 2952
BstAUI TGTACA 1 cut(s) 2470
BstC8I GCNNGC 6 cut(s) 1018, 1420, 2658, 2832, 3019, 3275
BstDSI CCRYGG 2 cut(s) 124, 2662
BstEII GGTNACC 1 cut(s) 3166
BstFNI CGCG 3 cut(s) 69, 217, 2074
BstHHI GCGC 2 cut(s) 217, 2074
BstMAI GTCTC 6 cut(s) 114, 189, 1025, 1584, 1784, 2303
BstNSI RCATGY 2 cut(s) 818, 1422
BstPI GGTNACC 1 cut(s) 3166
BstSFI CTRYAG 3 cut(s) 1098, 1572, 3054
BstSLI GKGCMC 1 cut(s) 3299
BstUI CGCG 3 cut(s) 69, 217, 2074
BstV2I GAAGAC 1 cut(s) 3357
BstX2I RGATCY 4 cut(s) 1386, 1740, 2272, 2557
BstXI CCANNNNNNTGG 2 cut(s) 1774, 2669
BstYI RGATCY 4 cut(s) 1386, 1740, 2272, 2557
Bsu36I CCTNAGG 1 cut(s) 886
BsuI GTATCC 1 cut(s) 2810
BsuRI GGCC 5 cut(s) 1696, 2014, 2315, 2493, 3297
BtgI CCRYGG 2 cut(s) 124, 2662
BtsIMutI CAGTG 2 cut(s) 211, 1099
BtuMI TCGCGA 1 cut(s) 69
Cac8I GCNNGC 6 cut(s) 1018, 1420, 2658, 2832, 3019, 3275
CaiI CAGNNNCTG 1 cut(s) 3263
CfoI GCGC 2 cut(s) 217, 2074
Cfr13I GGNCC 6 cut(s) 1231, 1694, 2313, 3260, 3295, 3296
CseI GACGC 1 cut(s) 1112
Csp6I GTAC 7 cut(s) 574, 906, 1772, 1845, 2471, 2487, 2880
CviQI GTAC 7 cut(s) 574, 906, 1772, 1845, 2471, 2487, 2880
DraI TTTAAA 1 cut(s) 2692
EaeI YGGCCR 1 cut(s) 2012
Eam1104I CTCTTC 8 cut(s) 146, 162, 251, 314, 385, 425, 1401, 2952
EarI CTCTTC 8 cut(s) 146, 162, 251, 314, 385, 425, 1401, 2952
Ecl136II GAGCTC 1 cut(s) 3389
Eco130I CCWWGG 3 cut(s) 1767, 2662, 2959
Eco24I GRGCYC 3 cut(s) 644, 3299, 3391
Eco31I GGTCTC 2 cut(s) 114, 1784
Eco32I GATATC 1 cut(s) 3404
Eco47I GGWCC 2 cut(s) 1231, 3260
Eco53kI GAGCTC 1 cut(s) 3389
Eco57I CTGAAG 2 cut(s) 186, 1095
Eco81I CCTNAGG 1 cut(s) 886
Eco88I CYCGRG 2 cut(s) 2651, 3036
Eco91I GGTNACC 1 cut(s) 3166
EcoICRI GAGCTC 1 cut(s) 3389
EcoO109I RGGNCCY 4 cut(s) 1231, 3260, 3295, 3296
EcoO65I GGTNACC 1 cut(s) 3166
EcoRI GAATTC 1 cut(s) 1057
EcoRV GATATC 1 cut(s) 3404
EcoT14I CCWWGG 3 cut(s) 1767, 2662, 2959
EcoT22I ATGCAT 1 cut(s) 3370
EcoT38I GRGCYC 3 cut(s) 644, 3299, 3391
ErhI CCWWGG 3 cut(s) 1767, 2662, 2959
FalI AAGNNNNNCTT 4 cut(s) 915, 947, 3266, 3298
FaqI GGGAC 8 cut(s) 374, 904, 1244, 2227, 2432, 2661, 2680, 3013
FauI CCCGC 3 cut(s) 1013, 1833, 3333
FauNDI CATATG 1 cut(s) 621
FbaI TGATCA 3 cut(s) 523, 1327, 2433
FriOI GRGCYC 3 cut(s) 644, 3299, 3391
FspBI CTAG 6 cut(s) 1017, 1992, 2544, 2877, 3018, 3156
GlaI GCGC 2 cut(s) 216, 2073
GsuI CTGGAG 4 cut(s) 1707, 2538, 3228, 3285
HaeIII GGCC 5 cut(s) 1696, 2014, 2315, 2493, 3297
HapII CCGG 3 cut(s) 1423, 2269, 2597
HgaI GACGC 1 cut(s) 1112
HhaI GCGC 2 cut(s) 217, 2074
Hin6I GCGC 2 cut(s) 215, 2072
HinP1I GCGC 2 cut(s) 215, 2072
HpaII CCGG 3 cut(s) 1423, 2269, 2597
HphI GGTGA 8 cut(s) 44, 433, 1166, 1303, 1390, 2213, 2443, 3211
Hpy166II GTNNAC 4 cut(s) 1157, 2340, 2473, 2933
Hpy8I GTNNAC 4 cut(s) 1157, 2340, 2473, 2933
Hpy99I CGWCG 1 cut(s) 138
HpyCH4III ACNGT 9 cut(s) 125, 206, 1094, 1451, 2029, 2477, 2930, 2937, 3309
HpyCH4IV ACGT 3 cut(s) 136, 2485, 2522
HpySE526I ACGT 3 cut(s) 136, 2485, 2522
HspAI GCGC 2 cut(s) 215, 2072
Kpn2I TCCGGA 1 cut(s) 2596
Ksp22I TGATCA 3 cut(s) 523, 1327, 2433
LmnI GCTCC 6 cut(s) 436, 1004, 2419, 2557, 3209, 3386
MaeI CTAG 6 cut(s) 1017, 1992, 2544, 2877, 3018, 3156
MaeII ACGT 3 cut(s) 136, 2485, 2522
MaeIII GTNAC 5 cut(s) 50, 1566, 1927, 2638, 3166
MbiI CCGCTC 1 cut(s) 2726
MflI RGATCY 4 cut(s) 1386, 1740, 2272, 2557
MhlI GDGCHC 4 cut(s) 133, 644, 3299, 3391
MlyI GAGTC 5 cut(s) 58, 841, 1408, 2345, 2643
MmeI TCCRAC 3 cut(s) 2064, 2461, 2483
Mph1103I ATGCAT 1 cut(s) 3370
MroI TCCGGA 1 cut(s) 2596
MroXI GAANNNNTTC 2 cut(s) 876, 1731
MslI CAYNNNNRTG 4 cut(s) 498, 558, 819, 2289
MspA1I CMGCKG 1 cut(s) 983
MspI CCGG 3 cut(s) 1423, 2269, 2597
Mva1269I GAATGC 2 cut(s) 3157, 3368
MvnI CGCG 3 cut(s) 69, 217, 2074
NciI CCSGG 1 cut(s) 2270
NcoI CCATGG 1 cut(s) 2662
NdeI CATATG 1 cut(s) 621
NheI GCTAGC 2 cut(s) 1016, 3017
NlaIV GGNNCC 5 cut(s) 1232, 1716, 2314, 3190, 3297
NmeAIII GCCGAG 2 cut(s) 248, 2519
NmuCI GTSAC 1 cut(s) 50
NruI TCGCGA 1 cut(s) 69
NsiI ATGCAT 1 cut(s) 3370
NspI RCATGY 2 cut(s) 818, 1422
PaeI GCATGC 1 cut(s) 1422
PaeR7I CTCGAG 1 cut(s) 2651
PasI CCCWGGG 1 cut(s) 2996
PcsI WCGNNNNNNNCGW 2 cut(s) 2017, 2491
PctI GAATGC 2 cut(s) 3157, 3368
PdmI GAANNNNTTC 2 cut(s) 876, 1731
PfoI TCCNGGA 1 cut(s) 2268
PleI GAGTC 5 cut(s) 57, 841, 1407, 2344, 2643
PpsI GAGTC 5 cut(s) 57, 841, 1407, 2344, 2643
PpuMI RGGWCCY 2 cut(s) 1231, 3260
PsiI TTATAA 1 cut(s) 1709
Psp124BI GAGCTC 1 cut(s) 3391
Psp1406I AACGTT 1 cut(s) 2522
Psp5II RGGWCCY 2 cut(s) 1231, 3260
PspEI GGTNACC 1 cut(s) 3166
PspN4I GGNNCC 5 cut(s) 1232, 1716, 2314, 3190, 3297
PspOMI GGGCCC 1 cut(s) 3295
PspPI GGNCC 6 cut(s) 1231, 1694, 2313, 3260, 3295, 3296
PspPPI RGGWCCY 2 cut(s) 1231, 3260
PspXI VCTCGAGB 1 cut(s) 2651
PstI CTGCAG 2 cut(s) 1102, 3058
PstNI CAGNNNCTG 1 cut(s) 3263
PsuI RGATCY 4 cut(s) 1386, 1740, 2272, 2557
PvuII CAGCTG 1 cut(s) 983
RruI TCGCGA 1 cut(s) 69
RsaI GTAC 7 cut(s) 575, 907, 1773, 1846, 2472, 2488, 2881
RsaNI GTAC 7 cut(s) 574, 906, 1772, 1845, 2471, 2487, 2880
RseI CAYNNNNRTG 4 cut(s) 498, 558, 819, 2289
SacI GAGCTC 1 cut(s) 3391
Sau96I GGNCC 6 cut(s) 1231, 1694, 2313, 3260, 3295, 3296
SchI GAGTC 5 cut(s) 58, 841, 1408, 2345, 2643
SduI GDGCHC 4 cut(s) 133, 644, 3299, 3391
SfcI CTRYAG 3 cut(s) 1098, 1572, 3054
Sfr274I CTCGAG 1 cut(s) 2651
SinI GGWCC 2 cut(s) 1231, 3260
SlaI CTCGAG 1 cut(s) 2651
SmiMI CAYNNNNRTG 4 cut(s) 498, 558, 819, 2289
SmlI CTYRAG 3 cut(s) 1235, 1390, 2651
SmoI CTYRAG 3 cut(s) 1235, 1390, 2651
SphI GCATGC 1 cut(s) 1422
SsiI CCGC 7 cut(s) 550, 1020, 1357, 1840, 2726, 2918, 3340
SspI AATATT 1 cut(s) 2008
SspMI CTAG 6 cut(s) 1017, 1992, 2544, 2877, 3018, 3156
SstI GAGCTC 1 cut(s) 3391
StyI CCWWGG 3 cut(s) 1767, 2662, 2959
TaaI ACNGT 9 cut(s) 125, 206, 1094, 1451, 2029, 2477, 2930, 2937, 3309
TaiI ACGT 3 cut(s) 139, 2488, 2525
TatI WGTACW 3 cut(s) 573, 2470, 2879
TauI GCSGC 2 cut(s) 553, 2729
TscAI CASTG 2 cut(s) 211, 1099
TseFI GTSAC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 50
TspRI CASTG 2 cut(s) 211, 1099
VpaK11BI GGWCC 2 cut(s) 1231, 3260
XapI RAATTY 4 cut(s) 1057, 1363, 1506, 2693
XceI RCATGY 2 cut(s) 818, 1422
XcmI CCANNNNNNNNNTGG 1 cut(s) 1507
XhoI CTCGAG 1 cut(s) 2651
XmnI GAANNNNTTC 2 cut(s) 876, 1731
XspI CTAG 6 cut(s) 1017, 1992, 2544, 2877, 3018, 3156
Zsp2I ATGCAT 1 cut(s) 3370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.