TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 13 - 181 | 3.5e-38 | TIR domain |
| NB-ARC | PF00931 | 184 - 350 | 1.5e-17 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 421 - 481 | 9.3e-11 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 625 - 717 | 3.3e-06 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 633 - 703 | 4.2e-09 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_13 | PF23286 | 703 - 789 | 5.6e-10 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 711 - 810 | 6.9e-12 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 941 |
| Acc16I | TGCGCA | 1 cut(s) | 1101 |
| AccB1I | GGYRCC | 1 cut(s) | 277 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 244 |
| AccI | GTMKAC | 2 cut(s) | 1572, 2464 |
| AccII | CGCG | 2 cut(s) | 795, 2685 |
| AccIII | TCCGGA | 1 cut(s) | 1961 |
| AciI | CCGC | 3 cut(s) | 627, 1853, 2664 |
| AclWI | GGATC | 5 cut(s) | 235, 293, 1448, 1461, 1537 |
| AcsI | RAATTY | 4 cut(s) | 185, 771, 2389, 2549 |
| AcuI | CTGAAG | 1 cut(s) | 341 |
| AdeI | CACNNNGTG | 1 cut(s) | 219 |
| AfaI | GTAC | 5 cut(s) | 744, 1313, 1701, 1861, 1919 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 244, 917, 1364, 1627 |
| AflIII | ACRYGT | 2 cut(s) | 74, 1228 |
| AjiI | CACGTC | 2 cut(s) | 1085, 1229 |
| AjnI | CCWGG | 1 cut(s) | 243 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 882, 914 |
| AleI | CACNNNNGTG | 1 cut(s) | 79 |
| Alw21I | GWGCWC | 1 cut(s) | 2357 |
| Alw26I | GTCTC | 3 cut(s) | 442, 1994, 2425 |
| AlwI | GGATC | 5 cut(s) | 235, 293, 1448, 1461, 1537 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 244 |
| Ama87I | CYCGRG | 1 cut(s) | 1835 |
| Aor13HI | TCCGGA | 1 cut(s) | 1961 |
| AoxI | GGCC | 3 cut(s) | 808, 2478, 2641 |
| ApeKI | GCWGC | 4 cut(s) | 1929, 2047, 2097, 2139 |
| ApoI | RAATTY | 4 cut(s) | 185, 771, 2389, 2549 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1218, 1250 |
| AseI | ATTAAT | 2 cut(s) | 2031, 2241 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1491 |
| AspLEI | GCGC | 3 cut(s) | 797, 1102, 2694 |
| AspS9I | GGNCC | 1 cut(s) | 235 |
| AsuC2I | CCSGG | 2 cut(s) | 1458, 2044 |
| AsuHPI | GGTGA | 2 cut(s) | 1871, 2584 |
| AvaI | CYCGRG | 1 cut(s) | 1835 |
| AvaII | GGWCC | 1 cut(s) | 235 |
| BaeGI | GKGCMC | 1 cut(s) | 282 |
| BamHI | GGATCC | 1 cut(s) | 1453 |
| BanI | GGYRCC | 1 cut(s) | 277 |
| BbsI | GAAGAC | 5 cut(s) | 75, 492, 1100, 2081, 2291 |
| Bbv12I | GWGCWC | 1 cut(s) | 2357 |
| BbvI | GCAGC | 4 cut(s) | 1916, 2034, 2109, 2126 |
| BccI | CCATC | 8 cut(s) | 102, 425, 524, 653, 782, 1244, 1640, 1891 |
| BceAI | ACGGC | 3 cut(s) | 1533, 1942, 2423 |
| BciT130I | CCWGG | 1 cut(s) | 245 |
| BcnI | CCSGG | 2 cut(s) | 1458, 2044 |
| BcoDI | GTCTC | 3 cut(s) | 442, 1994, 2425 |
| BfmI | CTRYAG | 2 cut(s) | 1089, 2281 |
| BglII | AGATCT | 1 cut(s) | 1388 |
| BisI | GCNGC | 4 cut(s) | 1930, 2048, 2098, 2140 |
| BlsI | GCNGC | 4 cut(s) | 1931, 2049, 2099, 2141 |
| Bme1390I | CCNGG | 3 cut(s) | 245, 1458, 2044 |
| Bme18I | GGWCC | 1 cut(s) | 235 |
| BmeT110I | CYCGRG | 1 cut(s) | 1835 |
| BmgBI | CACGTC | 2 cut(s) | 1085, 1229 |
| BmgT120I | GGNCC | 1 cut(s) | 235 |
| BmiI | GGNNCC | 2 cut(s) | 279, 1455 |
| BmrFI | CCNGG | 3 cut(s) | 245, 1458, 2044 |
| BmrI | ACTGGG | 2 cut(s) | 2262, 2358 |
| BmsI | GCATC | 1 cut(s) | 1662 |
| BmuI | ACTGGG | 2 cut(s) | 2262, 2358 |
| BpiI | GAAGAC | 5 cut(s) | 75, 492, 1100, 2081, 2291 |
| BpmI | CTGGAG | 2 cut(s) | 266, 1604 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2189 |
| BpuEI | CTTGAG | 3 cut(s) | 1063, 1925, 2279 |
| BpuMI | CCSGG | 2 cut(s) | 1458, 2044 |
| BsaAI | YACGTR | 3 cut(s) | 77, 1576, 1708 |
| BsaBI | GATNNNNATC | 3 cut(s) | 509, 1263, 1772 |
| BsaI | GGTCTC | 1 cut(s) | 442 |
| BsaJI | CCNNGG | 1 cut(s) | 2496 |
| BsaWI | WCCGGW | 1 cut(s) | 1961 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 244, 917, 1364, 1627 |
| Bse1I | ACTGG | 4 cut(s) | 237, 1030, 2257, 2353 |
| Bse8I | GATNNNNATC | 3 cut(s) | 509, 1263, 1772 |
| BseAI | TCCGGA | 1 cut(s) | 1961 |
| BseBI | CCWGG | 1 cut(s) | 245 |
| BseDI | CCNNGG | 1 cut(s) | 2496 |
| BseGI | GGATG | 5 cut(s) | 594, 1264, 1677, 1883, 2492 |
| BseJI | GATNNNNATC | 3 cut(s) | 509, 1263, 1772 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 244, 917, 1364, 1627 |
| BseMII | CTCAG | 6 cut(s) | 528, 1071, 1812, 1970, 2095, 2367 |
| BseNI | ACTGG | 4 cut(s) | 237, 1030, 2257, 2353 |
| BseRI | GAGGAG | 2 cut(s) | 1692, 2276 |
| BseSI | GKGCMC | 1 cut(s) | 282 |
| BseXI | GCAGC | 4 cut(s) | 1916, 2034, 2109, 2126 |
| BseYI | CCCAGC | 1 cut(s) | 432 |
| BsgI | GTGCAG | 1 cut(s) | 759 |
| Bsh1236I | CGCG | 2 cut(s) | 795, 2685 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2536 |
| BshFI | GGCC | 3 cut(s) | 810, 2480, 2643 |
| BshNI | GGYRCC | 1 cut(s) | 277 |
| BsiEI | CGRYCG | 1 cut(s) | 2536 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2357 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1835 |
| BsiSI | CCGG | 3 cut(s) | 1457, 1962, 2043 |
| BslFI | GGGAC | 1 cut(s) | 2224 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 244, 917, 1364, 1627 |
| BsmAI | GTCTC | 3 cut(s) | 442, 1994, 2425 |
| BsmFI | GGGAC | 1 cut(s) | 2224 |
| BsmI | GAATGC | 1 cut(s) | 2100 |
| BsnI | GGCC | 3 cut(s) | 810, 2480, 2643 |
| Bso31I | GGTCTC | 1 cut(s) | 442 |
| BsoBI | CYCGRG | 1 cut(s) | 1835 |
| Bsp1286I | GDGCHC | 2 cut(s) | 282, 2357 |
| Bsp13I | TCCGGA | 1 cut(s) | 1961 |
| Bsp1407I | TGTACA | 1 cut(s) | 1699 |
| Bsp143I | GATC | 7 cut(s) | 240, 298, 1388, 1453, 1542, 2035, 2533 |
| Bsp68I | TCGCGA | 1 cut(s) | 2685 |
| BspACI | CCGC | 3 cut(s) | 627, 1853, 2664 |
| BspANI | GGCC | 3 cut(s) | 810, 2480, 2643 |
| BspCNI | CTCAG | 6 cut(s) | 527, 1070, 1813, 1971, 2094, 2368 |
| BspEI | TCCGGA | 1 cut(s) | 1961 |
| BspFNI | CGCG | 2 cut(s) | 795, 2685 |
| BspHI | TCATGA | 1 cut(s) | 1336 |
| BspLI | GGNNCC | 2 cut(s) | 279, 1455 |
| BspMAI | CTGCAG | 1 cut(s) | 2285 |
| BspPI | GGATC | 5 cut(s) | 235, 293, 1448, 1461, 1537 |
| BspQI | GCTCTTC | 1 cut(s) | 141 |
| BspT107I | GGYRCC | 1 cut(s) | 277 |
| BspTNI | GGTCTC | 1 cut(s) | 442 |
| BsrGI | TGTACA | 1 cut(s) | 1699 |
| BsrI | ACTGG | 4 cut(s) | 237, 1030, 2257, 2353 |
| BssECI | CCNNGG | 1 cut(s) | 2496 |
| BssMI | GATC | 7 cut(s) | 240, 298, 1388, 1453, 1542, 2035, 2533 |
| BssNAI | GTATAC | 2 cut(s) | 1573, 2465 |
| BssT1I | CCWWGG | 1 cut(s) | 2496 |
| Bst1107I | GTATAC | 2 cut(s) | 1573, 2465 |
| Bst2UI | CCWGG | 1 cut(s) | 245 |
| Bst6I | CTCTTC | 3 cut(s) | 141, 214, 375 |
| BstAUI | TGTACA | 1 cut(s) | 1699 |
| BstBAI | YACGTR | 3 cut(s) | 77, 1576, 1708 |
| BstC8I | GCNNGC | 2 cut(s) | 1243, 2326 |
| BstF5I | GGATG | 5 cut(s) | 594, 1264, 1677, 1883, 2492 |
| BstFNI | CGCG | 2 cut(s) | 795, 2685 |
| BstHHI | GCGC | 3 cut(s) | 797, 1102, 2694 |
| BstKTI | GATC | 7 cut(s) | 243, 301, 1391, 1456, 1545, 2038, 2536 |
| BstMAI | GTCTC | 3 cut(s) | 442, 1994, 2425 |
| BstMBI | GATC | 7 cut(s) | 240, 298, 1388, 1453, 1542, 2035, 2533 |
| BstMCI | CGRYCG | 1 cut(s) | 2536 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 633, 1526, 1621, 2194, 2691 |
| BstNI | CCWGG | 1 cut(s) | 245 |
| BstNSI | RCATGY | 2 cut(s) | 1296, 2328 |
| BstSCI | CCNGG | 3 cut(s) | 243, 1456, 2042 |
| BstSFI | CTRYAG | 2 cut(s) | 1089, 2281 |
| BstSLI | GKGCMC | 1 cut(s) | 282 |
| BstSNI | TACGTA | 1 cut(s) | 1576 |
| BstUI | CGCG | 2 cut(s) | 795, 2685 |
| BstV1I | GCAGC | 4 cut(s) | 1916, 2034, 2109, 2126 |
| BstV2I | GAAGAC | 5 cut(s) | 75, 492, 1100, 2081, 2291 |
| BstX2I | RGATCY | 4 cut(s) | 240, 298, 1388, 1453 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2656 |
| BstYI | RGATCY | 4 cut(s) | 240, 298, 1388, 1453 |
| BstZ17I | GTATAC | 2 cut(s) | 1573, 2465 |
| BsuRI | GGCC | 3 cut(s) | 810, 2480, 2643 |
| BtgZI | GCGATG | 1 cut(s) | 631 |
| BtrI | CACGTC | 2 cut(s) | 1085, 1229 |
| BtsCI | GGATG | 5 cut(s) | 594, 1264, 1677, 1883, 2492 |
| BtsIMutI | CAGTG | 2 cut(s) | 1065, 1818 |
| BtuMI | TCGCGA | 1 cut(s) | 2685 |
| Cac8I | GCNNGC | 2 cut(s) | 1243, 2326 |
| CaiI | CAGNNNCTG | 1 cut(s) | 244 |
| CciI | TCATGA | 1 cut(s) | 1336 |
| CfoI | GCGC | 3 cut(s) | 797, 1102, 2694 |
| Cfr13I | GGNCC | 1 cut(s) | 235 |
| CseI | GACGC | 1 cut(s) | 801 |
| Csp6I | GTAC | 5 cut(s) | 743, 1312, 1700, 1860, 1918 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1765, 1800 |
| CviQI | GTAC | 5 cut(s) | 743, 1312, 1700, 1860, 1918 |
| DpnI | GATC | 7 cut(s) | 242, 300, 1390, 1455, 1544, 2037, 2535 |
| DpnII | GATC | 7 cut(s) | 240, 298, 1388, 1453, 1542, 2035, 2533 |
| DraIII | CACNNNGTG | 1 cut(s) | 219 |
| Eam1104I | CTCTTC | 3 cut(s) | 141, 214, 375 |
| EarI | CTCTTC | 3 cut(s) | 141, 214, 375 |
| Eco105I | TACGTA | 1 cut(s) | 1576 |
| Eco130I | CCWWGG | 1 cut(s) | 2496 |
| Eco147I | AGGCCT | 1 cut(s) | 810 |
| Eco31I | GGTCTC | 1 cut(s) | 442 |
| Eco47I | GGWCC | 1 cut(s) | 235 |
| Eco57I | CTGAAG | 1 cut(s) | 341 |
| Eco88I | CYCGRG | 1 cut(s) | 1835 |
| EcoRII | CCWGG | 1 cut(s) | 243 |
| EcoT14I | CCWWGG | 1 cut(s) | 2496 |
| EcoT22I | ATGCAT | 1 cut(s) | 1401 |
| ErhI | CCWWGG | 1 cut(s) | 2496 |
| FaqI | GGGAC | 1 cut(s) | 2224 |
| FblI | GTMKAC | 2 cut(s) | 1572, 2464 |
| Fnu4HI | GCNGC | 4 cut(s) | 1930, 2048, 2098, 2140 |
| FokI | GGATG | 5 cut(s) | 601, 1271, 1684, 1870, 2479 |
| Fsp4HI | GCNGC | 4 cut(s) | 1930, 2048, 2098, 2140 |
| FspAI | RTGCGCAY | 1 cut(s) | 1101 |
| FspI | TGCGCA | 1 cut(s) | 1101 |
| GlaI | GCGC | 3 cut(s) | 796, 1101, 2693 |
| GluI | GCNGC | 4 cut(s) | 1930, 2048, 2098, 2140 |
| GsaI | CCCAGC | 1 cut(s) | 436 |
| GsuI | CTGGAG | 2 cut(s) | 266, 1604 |
| HaeIII | GGCC | 3 cut(s) | 810, 2480, 2643 |
| HapII | CCGG | 3 cut(s) | 1457, 1962, 2043 |
| HgaI | GACGC | 1 cut(s) | 801 |
| HhaI | GCGC | 3 cut(s) | 797, 1102, 2694 |
| Hin6I | GCGC | 3 cut(s) | 795, 1100, 2692 |
| HinP1I | GCGC | 3 cut(s) | 795, 1100, 2692 |
| HincII | GTYRAC | 2 cut(s) | 408, 642 |
| HindII | GTYRAC | 2 cut(s) | 408, 642 |
| HindIII | AAGCTT | 2 cut(s) | 464, 1587 |
| HpaI | GTTAAC | 1 cut(s) | 408 |
| HpaII | CCGG | 3 cut(s) | 1457, 1962, 2043 |
| HphI | GGTGA | 2 cut(s) | 1871, 2584 |
| Hpy166II | GTNNAC | 8 cut(s) | 408, 642, 871, 1435, 1573, 1700, 1879, 2465 |
| Hpy8I | GTNNAC | 8 cut(s) | 408, 642, 871, 1435, 1573, 1700, 1879, 2465 |
| Hpy99I | CGWCG | 2 cut(s) | 47, 167 |
| HpyCH4IV | ACGT | 8 cut(s) | 45, 76, 358, 1084, 1205, 1228, 1575, 1707 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 633, 1526, 1621, 2194, 2691 |
| HpySE526I | ACGT | 8 cut(s) | 45, 76, 358, 1084, 1205, 1228, 1575, 1707 |
| HspAI | GCGC | 3 cut(s) | 795, 1100, 2692 |
| Kpn2I | TCCGGA | 1 cut(s) | 1961 |
| KspAI | GTTAAC | 1 cut(s) | 408 |
| Kzo9I | GATC | 7 cut(s) | 240, 298, 1388, 1453, 1542, 2035, 2533 |
| LguI | GCTCTTC | 1 cut(s) | 141 |
| LmnI | GCTCC | 4 cut(s) | 63, 175, 1133, 1975 |
| Lsp1109I | GCAGC | 4 cut(s) | 1916, 2034, 2109, 2126 |
| LweI | GCATC | 1 cut(s) | 1662 |
| MaeII | ACGT | 8 cut(s) | 45, 76, 358, 1084, 1205, 1228, 1575, 1707 |
| MaeIII | GTNAC | 2 cut(s) | 1064, 1324 |
| MalI | GATC | 7 cut(s) | 242, 300, 1390, 1455, 1544, 2037, 2535 |
| MboI | GATC | 7 cut(s) | 240, 298, 1388, 1453, 1542, 2035, 2533 |
| MflI | RGATCY | 4 cut(s) | 240, 298, 1388, 1453 |
| MhlI | GDGCHC | 2 cut(s) | 282, 2357 |
| MlyI | GAGTC | 2 cut(s) | 542, 2095 |
| MmeI | TCCRAC | 5 cut(s) | 14, 520, 589, 784, 1158 |
| Mph1103I | ATGCAT | 1 cut(s) | 1401 |
| MroI | TCCGGA | 1 cut(s) | 1961 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1491 |
| MslI | CAYNNNNRTG | 3 cut(s) | 79, 1644, 2105 |
| MspI | CCGG | 3 cut(s) | 1457, 1962, 2043 |
| MspR9I | CCNGG | 3 cut(s) | 245, 1458, 2044 |
| Mva1269I | GAATGC | 1 cut(s) | 2100 |
| MvaI | CCWGG | 1 cut(s) | 245 |
| MvnI | CGCG | 2 cut(s) | 795, 2685 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 633, 1526, 1621, 2194, 2691 |
| NciI | CCSGG | 2 cut(s) | 1458, 2044 |
| NdeII | GATC | 7 cut(s) | 240, 298, 1388, 1453, 1542, 2035, 2533 |
| NlaIV | GGNNCC | 2 cut(s) | 279, 1455 |
| NmeAIII | GCCGAG | 1 cut(s) | 2506 |
| NruI | TCGCGA | 1 cut(s) | 2685 |
| NsbI | TGCGCA | 1 cut(s) | 1101 |
| NsiI | ATGCAT | 1 cut(s) | 1401 |
| NspI | RCATGY | 2 cut(s) | 1296, 2328 |
| OliI | CACNNNNGTG | 1 cut(s) | 79 |
| PaeI | GCATGC | 1 cut(s) | 2328 |
| PaeR7I | CTCGAG | 1 cut(s) | 1835 |
| PagI | TCATGA | 1 cut(s) | 1336 |
| PceI | AGGCCT | 1 cut(s) | 810 |
| PciSI | GCTCTTC | 1 cut(s) | 141 |
| PctI | GAATGC | 1 cut(s) | 2100 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1491 |
| PfeI | GAWTC | 8 cut(s) | 140, 362, 569, 612, 933, 1442, 1846, 2630 |
| PflFI | GACNNNGTC | 1 cut(s) | 1430 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 244 |
| PfoI | TCCNGGA | 2 cut(s) | 243, 1456 |
| PkrI | GCNGC | 4 cut(s) | 1931, 2049, 2099, 2141 |
| Ple19I | CGATCG | 1 cut(s) | 2536 |
| PleI | GAGTC | 2 cut(s) | 542, 2094 |
| PpsI | GAGTC | 2 cut(s) | 542, 2094 |
| Ppu21I | YACGTR | 3 cut(s) | 77, 1576, 1708 |
| PshBI | ATTAAT | 2 cut(s) | 2031, 2241 |
| PsiI | TTATAA | 1 cut(s) | 941 |
| Psp6I | CCWGG | 1 cut(s) | 243 |
| PspFI | CCCAGC | 1 cut(s) | 432 |
| PspGI | CCWGG | 1 cut(s) | 243 |
| PspN4I | GGNNCC | 2 cut(s) | 279, 1455 |
| PspPI | GGNCC | 1 cut(s) | 235 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1683, 1715 |
| PstI | CTGCAG | 1 cut(s) | 2285 |
| PstNI | CAGNNNCTG | 1 cut(s) | 244 |
| PsuI | RGATCY | 4 cut(s) | 240, 298, 1388, 1453 |
| PsyI | GACNNNGTC | 1 cut(s) | 1430 |
| PvuI | CGATCG | 1 cut(s) | 2536 |
| RruI | TCGCGA | 1 cut(s) | 2685 |
| RsaI | GTAC | 5 cut(s) | 744, 1313, 1701, 1861, 1919 |
| RsaNI | GTAC | 5 cut(s) | 743, 1312, 1700, 1860, 1918 |
| RseI | CAYNNNNRTG | 3 cut(s) | 79, 1644, 2105 |
| SapI | GCTCTTC | 1 cut(s) | 141 |
| SatI | GCNGC | 4 cut(s) | 1930, 2048, 2098, 2140 |
| Sau3AI | GATC | 7 cut(s) | 240, 298, 1388, 1453, 1542, 2035, 2533 |
| Sau96I | GGNCC | 1 cut(s) | 235 |
| SchI | GAGTC | 2 cut(s) | 542, 2095 |
| ScrFI | CCNGG | 3 cut(s) | 245, 1458, 2044 |
| SduI | GDGCHC | 2 cut(s) | 282, 2357 |
| SfaNI | GCATC | 1 cut(s) | 1662 |
| SfcI | CTRYAG | 2 cut(s) | 1089, 2281 |
| Sfr274I | CTCGAG | 1 cut(s) | 1835 |
| SinI | GGWCC | 1 cut(s) | 235 |
| SlaI | CTCGAG | 1 cut(s) | 1835 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 79, 1644, 2105 |
| SmlI | CTYRAG | 4 cut(s) | 1078, 1835, 1940, 2258 |
| SmoI | CTYRAG | 4 cut(s) | 1078, 1835, 1940, 2258 |
| SnaBI | TACGTA | 1 cut(s) | 1576 |
| SphI | GCATGC | 1 cut(s) | 2328 |
| SseBI | AGGCCT | 1 cut(s) | 810 |
| SsiI | CCGC | 3 cut(s) | 627, 1853, 2664 |
| SspI | AATATT | 1 cut(s) | 817 |
| StuI | AGGCCT | 1 cut(s) | 810 |
| StyD4I | CCNGG | 3 cut(s) | 243, 1456, 2042 |
| StyI | CCWWGG | 1 cut(s) | 2496 |
| TaiI | ACGT | 8 cut(s) | 48, 79, 361, 1087, 1208, 1231, 1578, 1710 |
| TaqI | TCGA | 5 cut(s) | 126, 183, 471, 1836, 2200 |
| TatI | WGTACW | 3 cut(s) | 742, 1311, 1699 |
| TfiI | GAWTC | 8 cut(s) | 140, 362, 569, 612, 933, 1442, 1846, 2630 |
| TscAI | CASTG | 2 cut(s) | 1065, 1825 |
| TseI | GCWGC | 4 cut(s) | 1929, 2047, 2097, 2139 |
| TspGWI | ACGGA | 3 cut(s) | 1538, 2168, 2514 |
| TspRI | CASTG | 2 cut(s) | 1065, 1825 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1430 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 244 |
| VpaK11BI | GGWCC | 1 cut(s) | 235 |
| VspI | ATTAAT | 2 cut(s) | 2031, 2241 |
| XapI | RAATTY | 4 cut(s) | 185, 771, 2389, 2549 |
| XbaI | TCTAGA | 3 cut(s) | 767, 877, 1282 |
| XceI | RCATGY | 2 cut(s) | 1296, 2328 |
| XhoI | CTCGAG | 1 cut(s) | 1835 |
| XmiI | GTMKAC | 2 cut(s) | 1572, 2464 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1491 |
| Zsp2I | ATGCAT | 1 cut(s) | 1401 |