Rroxscaffold_4G00305900

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
26658640 .. 26667028
8389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00305900.1

Sequence Viewer

Length: 2241 bp
ATGGCCGGTGCTTCTTCATCGTCTGGAGGCAGTCACAAATACGACGTTTTCATCAATTTCAGAGGCGAAGACACACGTAGGTGTTTCGTCTGCCATCTCTACGAAGCTCTGAAACAGAAAGCACTGGACACCTTCATTGATTCCGAAGAGCTTAGAAAAGGCGACGACCTTTCGGAGCTATTCAAAGCCATTCAAGGCTCGACGCTTTCGATTGTAGTTTTCTCTAAAGACTACGCATCTTCTAAATGGTGCTTAAAAGAACTGGTCCAGATCTTGGAGTGTATGGATAGGCAGAGCCAGATTGTGGTGCCCATTTTCTATGAAGTAGATCCCTCCCATATTCGCAACCTTGAGGAAAGTTTTGCAGAAGCTTTTGCAAAACATGAAAGTAATTCCAAAATCGACAAAGAAGAGTTGGAGAGCTGGAAGTCCAGTTTAACCAGAGCCACCAGTTTATCTGGCTGGGATTCCAAATCCAAAGATTATCGCTTCTGGTCAATTATTAAATTTTCACGATTGGTTGTGCAGGCTACGAAAGTTGAAGGCATAATTCTAGACTTGTCAAAGTTCAAAGAGGTATACGTAAATGATGAAGTTTTTGTTAGCATGAGGAGACTAAGGCTACTCCAGCTTTATGAATATTATTATAAATATGAAGATGAATATGACTATGTTTATGGAAGAGAATTTACGCGACCTGCAGATTATGAACCTTGTGTACAGAAAGTGAGTGAGAACTTAAAGTTTCTTTCTCAAGAGTTGAGATTTCTTGTGTGGCATGGATGCCCACTAAAGTCTTTCCCAATTAATTTTCTACCAAAGAATCTTATTTATGTTGACATGTGCTATAGTCGTATTGAACAACTTTGGGAAGGAACCAGGTTGCCTGAGTACTTAGGGAATTTGAAATCCTTGTGGCAATTTGAAGTTGGGAGAAGTGGTATAAAACAACTTACATTCTCTATCTTGCGTTTAGGGGATTCATTATCATGTAATGGATGTAAAGAGATGACGGCGCCCTTTTCCTCGTGGCCAACATGGAACCCCCAAAATCAGAGGAACTCTTTTCTGGAGAGTCTTGATTTAAGTGACTGCAATCTCTTGGAATTATCATACGGCATTGCTCATTTATTATCACATGGCATTGCTCATTTATCATTGTATGAATTAAACTTATCCGGAAACAACAAGTTGGAAAGTTTACCTGCAGCAATGATTCGCCTGGGTCATTTAACACGGCTCTATCTGAGAGGTTGCAAGAGACTGAAATCAATACCAGAGCTTTCATCGAGTATACAAGAAATCGATGCCCAAGATTGCACATCTTTGGAGACAGTTTCAACACCACAGCCTCCGTACGCTGAGGACATTCGCTTCCGATTTGTTAATTGCTTCAAGTTGGTGACCAATACCAATCTATTTATAGATATTGTGGAAACTGCTACTGATATTCAGGCTATTTATGATCGTTATATTGGACCTCCTTACCATGTATCTCTTCCTGGAAGTGATATTCCAGAATGGTTCAACCATCAGAGTAGAGGGTCTTTCGTAACTGTGCAATTACCACCCAACTGGCTCGCAAACAAGTTTCTAGGGTTCGCTATATGCGCCATCGGTAACTTGCGGGGTGCTGCAAATACAAAAACTCAATCTGCTGTATGTTGTTGTACCTTAGAAGCAAATGATGGTCAGGACAATTTCTATTTTTCTTTGTTCGATATTCTAGATGGAACTGGCATGCCTCTTGAATCAGATCATATGTTGCTGGGATATACAAATTTACGAAGTTTAGGAGAGAGGCATAATGAACGCAAATACACCGAGGCCAGATTTAGGATAGTGGCAAGCACCTATGGAGTCATCCCAAATGATTCAATGACATTAGAAGATTGCACTTGGATCACAAGTTGCGGGGTTCGGTTATTCCACATAAATCCACCCTCGGTGGATCTTATTTGTAATTTGGAAAATAGAGAAACAGAGATAAGGAGTAAGAGAAAGAGAGAAACACTAGAGAGAGGGAAAGAGAAGATGGGGGTGGAGGTGCAGGAAGAGGGGGAGGAGTGCTCAGGAGGGCCCATATGCTGCTGCTTCTCGTTGAGTGGGTGTACAATATCGTTGAGAAAGCGACAAAAAGAAAAAGAAAGAGAGGGAGAGGGTGTTGCTGGAGACACAGGATTAGAGTCAGAGGACGCGGATGTCTCAGGGGAAGGGGGACTCCTCACATTGTCTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

746

Amino Acids

84.93

Weight (kDa)

5.36

Isoelectric Point (pI)

43.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 13 - 169 3.1e-45 TIR domain
TIR_2 PF13676 16 - 111 1.2e-14 TIR domain
C-JID PF20160 500 - 646 3e-20 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000067)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g01690 FvH4_6g01690 FvH4_7g11151 FvH4_7g11160 FvH4_7g11570 FvH4_7g17700 FvH4_7g26071 FvH4_7g28510 FvH4_7g28520 FvH4_7g28530 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550
malus_domestica MD00G1020300.v1.1 MD00G1020400.v1.1 MD00G1020500.v1.1 MD00G1020700.v1.1 MD00G1021100.v1.1 MD00G1131100.v1.1 MD01G1188900.v1.1 MD01G1189000.v1.1 MD01G1189200.v1.1 MD01G1190100.v1.1 MD01G1190300.v1.1 MD01G1190500.v1.1 MD01G1190700.v1.1 MD01G1191400.v1.1 MD02G1260000.v1.1 MD02G1260200.v1.1 MD02G1260400.v1.1 MD03G1202400.v1.1 MD04G1022500.v1.1 MD04G1022700.v1.1 MD04G1200400.v1.1 MD07G1015300.v1.1 MD07G1015400.v1.1 MD07G1141800.v1.1 MD07G1242100.v1.1 MD07G1242500.v1.1 MD07G1243000.v1.1 MD07G1243500.v1.1 MD07G1244000.v1.1 MD07G1244600.v1.1 MD07G1245100.v1.1 MD07G1245600.v1.1 MD07G1246000.v1.1 MD07G1246200.v1.1 MD07G1260000.v1.1 MD07G1260700.v1.1 MD07G1261100.v1.1 MD08G1229600.v1.1 MD08G1229700.v1.1 MD08G1230200.v1.1 MD09G1186700.v1.1 MD09G1186800.v1.1 MD17G1208600.v1.1
pyrus_communis pycom01g20080 pycom01g20090 pycom01g20120 pycom01g20130 pycom01g20160 pycom01g20200 pycom01g20210 pycom01g20250 pycom02g22140 pycom02g22170 pycom02g22200 pycom02g22220 pycom02g22230 pycom03g15410 pycom03g15420 pycom04g01960 pycom04g01970 pycom07g21840 pycom07g21930 pycom07g21960 pycom07g22000 pycom07g23350 pycom07g23370 pycom07g23440 pycom07g23450 pycom07g23460 pycom07g23500 pycom07g23530 pycom07g23590 pycom07g23660 pycom07g23670 pycom07g23690 pycom07g23710 pycom07g23760 pycom07g23770 pycom07g23780 pycom07g23800 pycom07g23820 pycom08g19980 pycom08g19990 pycom08g20010 pycom08g20020 pycom17g04750 pycom17g21140 pycom17g21200 pycom17g21250 pycom17g21270 pycom17g21290 pycom17g21340 pycom17g21350
rosa_chinensis RchiOBHm_Chr1g0335971 RchiOBHm_Chr1g0349181 RchiOBHm_Chr1g0349211 RchiOBHm_Chr1g0349221 RchiOBHm_Chr1g0350001 RchiOBHm_Chr1g0372491 RchiOBHm_Chr1g0372501 RchiOBHm_Chr1g0372511 RchiOBHm_Chr1g0372541 RchiOBHm_Chr1g0375911 RchiOBHm_Chr1g0375921 RchiOBHm_Chr1g0375931 RchiOBHm_Chr1g0375941 RchiOBHm_Chr1g0375951 RchiOBHm_Chr3g0454321 RchiOBHm_Chr6g0266131 RchiOBHm_Chr6g0270371 RchiOBHm_Chr6g0270381 RchiOBHm_Chr6g0270391 RchiOBHm_Chr7g0232121 RchiOBHm_Chr7g0232831
rosa_laevigata RLG00000008620 RLG00000009600 RLG00000010114 RLG00000020933 RLG00000022777 RLG00000022778 RLG00000025461 RLG00000025462 RLG00000026641 RLG00000026642 RLG00000026643 RLG00000026894 RLG00000028442 RLG00000028506 RLG00000028510 RLG00000028563 RLG00000028564 RLG00000028570 RLG00000028574 RLG00000028577 RLG00000028579 RLG00000028580 RLG00000028582 RLG00000028584 RLG00000028588 RLG00000028591 RLG00000028592 RLG00000028596
rosa_multiflora Rmu_co8179714.1_g000001 Rmu_co8285207.1_g000001 Rmu_co8469031.1_g000001 Rmu_co8499245.1_g000002 Rmu_sc0000616.1_g000011 Rmu_sc0000827.1_g000022 Rmu_sc0000827.1_g000025 Rmu_sc0000827.1_g000034 Rmu_sc0000827.1_g000036 Rmu_sc0001340.1_g000001 Rmu_sc0001909.1_g000018 Rmu_sc0002863.1_g000018 Rmu_sc0002863.1_g000031 Rmu_sc0002914.1_g000028 Rmu_sc0002914.1_g000029 Rmu_sc0002914.1_g000032 Rmu_sc0003385.1_g000001 Rmu_sc0003385.1_g000008 Rmu_sc0003385.1_g000009 Rmu_sc0003385.1_g000013 Rmu_sc0003385.1_g000015 Rmu_sc0003385.1_g000025 Rmu_sc0003441.1_g000069 Rmu_sc0003674.1_g000007 Rmu_sc0003674.1_g000011 Rmu_sc0004618.1_g000001 Rmu_sc0005410.1_g000018 Rmu_sc0006415.1_g000005 Rmu_sc0006415.1_g000006 Rmu_sc0006415.1_g000014 Rmu_sc0006415.1_g000018 Rmu_sc0009606.1_g000011 Rmu_sc0011111.1_g000006 Rmu_sc0011709.1_g000003 Rmu_sc0011709.1_g000006 Rmu_sc0014584.1_g000002 Rmu_sc0015952.1_g000001 Rmu_sc0019347.1_g000001 Rmu_sc0019347.1_g000002 Rmu_sc0019347.1_g000003 Rmu_sc0023808.1_g000001 Rmu_sc0032581.1_g000001 Rmu_sc0034725.1_g000002 Rmu_sc0035038.1_g000001 Rmu_ssc0000018.1_g000005 Rmu_ssc0000018.1_g000006 Rmu_ssc0000116.1_g000002 Rmu_ssc0000150.1_g000009 Rmu_ssc0000150.1_g000011 Rmu_ssc0000472.1_g000013
rosa_roxburghii Rroxscaffold_165G00437140 Rroxscaffold_174G00435220 Rroxscaffold_3G00228770 Rroxscaffold_3G00228780 Rroxscaffold_4G00282480 Rroxscaffold_4G00282490 Rroxscaffold_4G00282510 Rroxscaffold_4G00282520 Rroxscaffold_4G00282540 Rroxscaffold_4G00284870 Rroxscaffold_4G00295380 Rroxscaffold_4G00305140 Rroxscaffold_4G00305150 Rroxscaffold_4G00305210 Rroxscaffold_4G00305760 Rroxscaffold_4G00305810 Rroxscaffold_4G00305840 Rroxscaffold_4G00305900 Rroxscaffold_4G00305920 Rroxscaffold_4G00305960 Rroxscaffold_4G00305980 Rroxscaffold_4G00305990 Rroxscaffold_4G00306020 Rroxscaffold_4G00325020 Rroxscaffold_5G00352760 Rroxscaffold_6G00425210 Rroxscaffold_7G00201950 Rroxscaffold_7G00214940
rosa_rugosa Rorug01G0048900 Rorug01G0049000 Rorug01G0201400 Rorug01G0201700 Rorug01G0202000 Rorug01G0207700 Rorug01G0207800 Rorug01G0207900 Rorug01G0286300 Rorug01G0286400 Rorug01G0286500 Rorug01G0372500 Rorug01G0372600 Rorug01G0392300 Rorug01G0392400 Rorug01G0392500 Rorug01G0392600 Rorug01G0392700 Rorug01G0392800 Rorug01G0392800 Rorug01G0392900 Rorug01G0393000 Rorug02G0654200 Rorug02G0654200 Rorug04G0027700 Rorug05G0351300 Rorug05G0351400 Rorug05G0351600 Rorug05G0406600 Rorug07G0269500 Rorug07G0276200 Rorug07G0276200
rosa_samantha Rh1AG224200 Rh1AG229900 Rh1AG297600 Rh1AG297700 Rh1AG381000 Rh1AG404200 Rh1AG404300 Rh1AG404400 Rh1BG184300 Rh1BG367600 Rh1BG367900 Rh1BG368000 Rh1CG203700 Rh1CG208900 Rh1CG279000 Rh1CG279100 Rh1CG357900 Rh1CG380500 Rh1CG380700 Rh1CG380800 Rh1CG380900 Rh1DG214000 Rh3AG058200 Rh3BG059900 Rh6BG145500 Rh6BG292400 Rh6DG129800 Rh7AG423900 Rh7AG431300 Rh7BG249300 Rh7BG404200 Rh7CG049400 Rh7CG444300 Rh7CG450000 Rh7DG420600
rosa_wichuraiana Rw0G000410 Rw0G007570 Rw0G011870 Rw1G018580 Rw1G018590 Rw1G018610 Rw1G018620 Rw1G018640 Rw1G019140 Rw1G019150 Rw1G019260 Rw1G019900 Rw1G026290 Rw1G026300 Rw1G026870 Rw1G026890 Rw1G033510 Rw1G035810 Rw1G035830 Rw1G035840 Rw1G035850 Rw1G035860 Rw3G004460 Rw5G038750 Rw7G035060 Rw7G035610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 648
AasI GACNNNNNNGTC 1 cut(s) 2201
Acc36I ACCTGC 2 cut(s) 706, 1213
AccB1I GGYRCC 2 cut(s) 307, 1015
AccB7I CCANNNNNTGG 2 cut(s) 274, 304
AccI GTMKAC 2 cut(s) 579, 1294
AccII CGCG 2 cut(s) 694, 2198
AccIII TCCGGA 1 cut(s) 1178
AciI CCGC 3 cut(s) 1627, 1914, 2198
AclWI GGATC 3 cut(s) 323, 1910, 1959
AcoI YGGCCR 2 cut(s) 3, 1031
AcsI RAATTY 4 cut(s) 506, 686, 901, 1780
AcyI GRCGYC 1 cut(s) 1016
AfaI GTAC 5 cut(s) 720, 893, 1358, 1672, 2113
AfiI CCNNNNNNNGG 3 cut(s) 274, 304, 1836
AflIII ACRYGT 2 cut(s) 74, 840
AjnI CCWGG 3 cut(s) 878, 1221, 1501
AleI CACNNNNGTG 1 cut(s) 79
AluBI AGCT 7 cut(s) 107, 151, 178, 371, 423, 631, 1282
AluI AGCT 7 cut(s) 107, 151, 178, 371, 423, 631, 1282
Alw21I GWGCWC 1 cut(s) 2072
Alw26I GTCTC 5 cut(s) 607, 1255, 1325, 2166, 2209
AlwI GGATC 3 cut(s) 323, 1910, 1959
Aor13HI TCCGGA 1 cut(s) 1178
AoxI GGCC 4 cut(s) 3, 1031, 1827, 2078
ApaI GGGCCC 1 cut(s) 2082
ApeKI GCWGC 4 cut(s) 1208, 1634, 2088, 2091
ApoI RAATTY 4 cut(s) 506, 686, 901, 1780
AseI ATTAAT 1 cut(s) 807
AspLEI GCGC 2 cut(s) 1018, 1613
AspS9I GGNCC 4 cut(s) 265, 1478, 2078, 2079
AsuHPI GGTGA 1 cut(s) 1414
AvaII GGWCC 2 cut(s) 265, 1478
BaeGI GKGCMC 2 cut(s) 312, 2082
BalI TGGCCA 1 cut(s) 1033
BanI GGYRCC 2 cut(s) 307, 1015
BanII GRGCYC 1 cut(s) 2082
BarI GAAGNNNNNNTAC 2 cut(s) 673, 705
BauI CACGAG 1 cut(s) 1027
BbsI GAAGAC 1 cut(s) 75
Bbv12I GWGCWC 1 cut(s) 2072
BbvCI CCTCAGC 1 cut(s) 1362
BbvI GCAGC 4 cut(s) 1220, 1621, 2075, 2078
BccI CCATC 6 cut(s) 102, 1539, 1622, 1682, 1724, 2029
BceAI ACGGC 3 cut(s) 1029, 1132, 1253
BciT130I CCWGG 3 cut(s) 880, 1223, 1503
BcoDI GTCTC 5 cut(s) 607, 1255, 1325, 2166, 2209
BfaI CTAG 5 cut(s) 554, 1595, 1727, 2015, 2239
BfmI CTRYAG 3 cut(s) 699, 847, 1206
BfoI RGCGCY 1 cut(s) 1019
BfuAI ACCTGC 2 cut(s) 706, 1213
BglII AGATCT 1 cut(s) 270
BisI GCNGC 4 cut(s) 1209, 1635, 2089, 2092
BlsI GCNGC 4 cut(s) 1210, 1636, 2090, 2093
BmcAI AGTACT 1 cut(s) 893
Bme1390I CCNGG 3 cut(s) 880, 1223, 1503
Bme18I GGWCC 2 cut(s) 265, 1478
BmgT120I GGNCC 4 cut(s) 265, 1478, 2078, 2079
BmiI GGNNCC 5 cut(s) 309, 877, 1017, 1043, 2080
BmrFI CCNGG 3 cut(s) 880, 1223, 1503
BmsI GCATC 3 cut(s) 245, 773, 1297
BpiI GAAGAC 1 cut(s) 75
BplI GAGNNNNNCTC 2 cut(s) 2054, 2086
BpmI CTGGAG 4 cut(s) 45, 611, 1091, 2190
Bpu10I CCTNAGC 2 cut(s) 1362, 2071
BpuEI CTTGAG 2 cut(s) 371, 738
Bsa29I ATCGAT 1 cut(s) 1305
BsaAI YACGTR 2 cut(s) 77, 583
BsaHI GRCGYC 1 cut(s) 1016
BsaJI CCNNGG 3 cut(s) 1222, 1824, 1944
BsaWI WCCGGW 1 cut(s) 1178
BsaXI ACNNNNNCTCC 4 cut(s) 925, 955, 2148, 2178
Bsc4I CCNNNNNNNGG 3 cut(s) 274, 304, 1836
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 6 cut(s) 129, 267, 432, 450, 1580, 1741
Bse3DI GCAATG 3 cut(s) 1119, 1143, 1218
BseAI TCCGGA 1 cut(s) 1178
BseBI CCWGG 3 cut(s) 880, 1223, 1503
BseCI ATCGAT 1 cut(s) 1305
BseDI CCNNGG 3 cut(s) 1222, 1824, 1944
BseGI GGATG 4 cut(s) 788, 1004, 1863, 2206
BseLI CCNNNNNNNGG 3 cut(s) 274, 304, 1836
BseMI GCAATG 3 cut(s) 1119, 1143, 1218
BseMII CTCAG 5 cut(s) 879, 1238, 1353, 2085, 2220
BseNI ACTGG 6 cut(s) 129, 267, 432, 450, 1580, 1741
BseRI GAGGAG 3 cut(s) 625, 2078, 2213
BseSI GKGCMC 2 cut(s) 312, 2082
BseXI GCAGC 4 cut(s) 1220, 1621, 2075, 2078
BseYI CCCAGC 2 cut(s) 462, 1768
BsgI GTGCAG 2 cut(s) 545, 2069
Bsh1236I CGCG 2 cut(s) 694, 2198
BshFI GGCC 4 cut(s) 5, 1033, 1829, 2080
BshNI GGYRCC 2 cut(s) 307, 1015
BshVI ATCGAT 1 cut(s) 1305
BsiHKAI GWGCWC 1 cut(s) 2072
BsiSI CCGG 2 cut(s) 6, 1179
BsiWI CGTACG 1 cut(s) 1356
BslFI GGGAC 1 cut(s) 2232
BslI CCNNNNNNNGG 3 cut(s) 274, 304, 1836
BsmAI GTCTC 5 cut(s) 607, 1255, 1325, 2166, 2209
BsmFI GGGAC 1 cut(s) 2232
BsnI GGCC 4 cut(s) 5, 1033, 1829, 2080
Bsp120I GGGCCC 1 cut(s) 2078
Bsp1286I GDGCHC 3 cut(s) 312, 2072, 2082
Bsp13I TCCGGA 1 cut(s) 1178
Bsp1407I TGTACA 2 cut(s) 718, 2111
Bsp143I GATC 6 cut(s) 270, 328, 1465, 1756, 1902, 1951
BspACI CCGC 3 cut(s) 1627, 1914, 2198
BspANI GGCC 4 cut(s) 5, 1033, 1829, 2080
BspCNI CTCAG 5 cut(s) 880, 1239, 1354, 2084, 2219
BspDI ATCGAT 1 cut(s) 1305
BspEI TCCGGA 1 cut(s) 1178
BspFNI CGCG 2 cut(s) 694, 2198
BspLI GGNNCC 5 cut(s) 309, 877, 1017, 1043, 2080
BspMAI CTGCAG 2 cut(s) 703, 1210
BspMI ACCTGC 2 cut(s) 706, 1213
BspPI GGATC 3 cut(s) 323, 1910, 1959
BspQI GCTCTTC 1 cut(s) 141
BspT107I GGYRCC 2 cut(s) 307, 1015
BsrDI GCAATG 3 cut(s) 1119, 1143, 1218
BsrFI RCCGGY 1 cut(s) 5
BsrGI TGTACA 2 cut(s) 718, 2111
BsrI ACTGG 6 cut(s) 129, 267, 432, 450, 1580, 1741
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 3 cut(s) 1222, 1824, 1944
BssMI GATC 6 cut(s) 270, 328, 1465, 1756, 1902, 1951
BssNAI GTATAC 2 cut(s) 580, 1295
BssNI GRCGYC 1 cut(s) 1016
BssSI CACGAG 1 cut(s) 1027
Bst1107I GTATAC 2 cut(s) 580, 1295
Bst2BI CACGAG 1 cut(s) 1027
Bst2UI CCWGG 3 cut(s) 880, 1223, 1503
Bst4CI ACNGT 2 cut(s) 1336, 1558
Bst6I CTCTTC 5 cut(s) 141, 405, 676, 1503, 2049
BstACI GRCGYC 1 cut(s) 1016
BstAUI TGTACA 2 cut(s) 718, 2111
BstBAI YACGTR 2 cut(s) 77, 583
BstC8I GCNNGC 4 cut(s) 528, 1581, 1742, 1849
BstDEI CTNAG 9 cut(s) 152, 617, 888, 895, 1247, 1362, 1675, 2071, 2206
BstEII GGTNACC 1 cut(s) 1402
BstF5I GGATG 4 cut(s) 788, 1004, 1863, 2206
BstFNI CGCG 2 cut(s) 694, 2198
BstH2I RGCGCY 1 cut(s) 1019
BstHHI GCGC 2 cut(s) 1018, 1613
BstKTI GATC 6 cut(s) 273, 331, 1468, 1759, 1905, 1954
BstMAI GTCTC 5 cut(s) 607, 1255, 1325, 2166, 2209
BstMBI GATC 6 cut(s) 270, 328, 1465, 1756, 1902, 1951
BstMWI GCNNNNNNNGC 2 cut(s) 628, 1610
BstNI CCWGG 3 cut(s) 880, 1223, 1503
BstNSI RCATGY 2 cut(s) 844, 1744
BstPI GGTNACC 1 cut(s) 1402
BstSCI CCNGG 3 cut(s) 878, 1221, 1501
BstSFI CTRYAG 3 cut(s) 699, 847, 1206
BstSLI GKGCMC 2 cut(s) 312, 2082
BstSNI TACGTA 1 cut(s) 583
BstUI CGCG 2 cut(s) 694, 2198
BstV1I GCAGC 4 cut(s) 1220, 1621, 2075, 2078
BstV2I GAAGAC 1 cut(s) 75
BstX2I RGATCY 3 cut(s) 270, 328, 1951
BstXI CCANNNNNNTGG 1 cut(s) 1575
BstYI RGATCY 3 cut(s) 270, 328, 1951
BstZ17I GTATAC 2 cut(s) 580, 1295
Bsu15I ATCGAT 1 cut(s) 1305
BsuRI GGCC 4 cut(s) 5, 1033, 1829, 2080
BsuTUI ATCGAT 1 cut(s) 1305
BtsCI GGATG 4 cut(s) 788, 1004, 1863, 2206
BtsIMutI CAGTG 1 cut(s) 122
BveI ACCTGC 2 cut(s) 706, 1213
Cac8I GCNNGC 4 cut(s) 528, 1581, 1742, 1849
CfoI GCGC 2 cut(s) 1018, 1613
Cfr10I RCCGGY 1 cut(s) 5
Cfr13I GGNCC 4 cut(s) 265, 1478, 2078, 2079
ClaI ATCGAT 1 cut(s) 1305
CseI GACGC 2 cut(s) 211, 2204
CsiI ACCWGGT 1 cut(s) 878
Csp6I GTAC 5 cut(s) 719, 892, 1357, 1671, 2112
CviAII CATG 9 cut(s) 383, 607, 779, 841, 990, 1038, 1139, 1490, 1741
CviQI GTAC 5 cut(s) 719, 892, 1357, 1671, 2112
DdeI CTNAG 9 cut(s) 152, 617, 888, 895, 1247, 1362, 1675, 2071, 2206
DinI GGCGCC 1 cut(s) 1017
DpnI GATC 6 cut(s) 272, 330, 1467, 1758, 1904, 1953
DpnII GATC 6 cut(s) 270, 328, 1465, 1756, 1902, 1951
DrdI GACNNNNNNGTC 1 cut(s) 2201
DseDI GACNNNNNNGTC 1 cut(s) 2201
EaeI YGGCCR 2 cut(s) 3, 1031
Eam1104I CTCTTC 5 cut(s) 141, 405, 676, 1503, 2049
EarI CTCTTC 5 cut(s) 141, 405, 676, 1503, 2049
Eco105I TACGTA 1 cut(s) 583
Eco24I GRGCYC 1 cut(s) 2082
Eco47I GGWCC 2 cut(s) 265, 1478
Eco91I GGTNACC 1 cut(s) 1402
EcoO109I RGGNCCY 1 cut(s) 2078
EcoO65I GGTNACC 1 cut(s) 1402
EcoRII CCWGG 3 cut(s) 878, 1221, 1501
EcoT38I GRGCYC 1 cut(s) 2082
EgeI GGCGCC 1 cut(s) 1017
EheI GGCGCC 1 cut(s) 1017
FaeI CATG 9 cut(s) 386, 610, 782, 844, 993, 1041, 1142, 1493, 1744
FaqI GGGAC 1 cut(s) 2232
FatI CATG 9 cut(s) 382, 606, 778, 840, 989, 1037, 1138, 1489, 1740
FauI CCCGC 2 cut(s) 1620, 1907
FauNDI CATATG 2 cut(s) 1761, 2084
FblI GTMKAC 2 cut(s) 579, 1294
Fnu4HI GCNGC 4 cut(s) 1209, 1635, 2089, 2092
FokI GGATG 4 cut(s) 795, 1011, 1850, 2213
FriOI GRGCYC 1 cut(s) 2082
Fsp4HI GCNGC 4 cut(s) 1209, 1635, 2089, 2092
FspBI CTAG 5 cut(s) 554, 1595, 1727, 2015, 2239
GlaI GCGC 2 cut(s) 1017, 1612
GluI GCNGC 4 cut(s) 1209, 1635, 2089, 2092
GsaI CCCAGC 2 cut(s) 466, 1772
GsuI CTGGAG 4 cut(s) 45, 611, 1091, 2190
HaeII RGCGCY 1 cut(s) 1019
HaeIII GGCC 4 cut(s) 5, 1033, 1829, 2080
HapII CCGG 2 cut(s) 6, 1179
HgaI GACGC 2 cut(s) 211, 2204
HhaI GCGC 2 cut(s) 1018, 1613
Hin1I GRCGYC 1 cut(s) 1016
Hin1II CATG 9 cut(s) 386, 610, 782, 844, 993, 1041, 1142, 1493, 1744
Hin6I GCGC 2 cut(s) 1016, 1611
HinP1I GCGC 2 cut(s) 1016, 1611
HincII GTYRAC 1 cut(s) 838
HindII GTYRAC 1 cut(s) 838
HindIII AAGCTT 1 cut(s) 369
HpaII CCGG 2 cut(s) 6, 1179
HphI GGTGA 1 cut(s) 1414
Hpy166II GTNNAC 6 cut(s) 580, 719, 838, 1202, 1295, 2112
Hpy8I GTNNAC 6 cut(s) 580, 719, 838, 1202, 1295, 2112
Hpy99I CGWCG 3 cut(s) 47, 167, 205
HpyAV CCTTC 4 cut(s) 142, 536, 866, 2207
HpyCH4III ACNGT 2 cut(s) 1336, 1558
HpyCH4IV ACGT 3 cut(s) 45, 76, 582
HpyF10VI GCNNNNNNNGC 2 cut(s) 628, 1610
HpyF3I CTNAG 9 cut(s) 152, 617, 888, 895, 1247, 1362, 1675, 2071, 2206
HpySE526I ACGT 3 cut(s) 45, 76, 582
Hsp92I GRCGYC 1 cut(s) 1016
Hsp92II CATG 9 cut(s) 386, 610, 782, 844, 993, 1041, 1142, 1493, 1744
HspAI GCGC 2 cut(s) 1016, 1611
KasI GGCGCC 1 cut(s) 1015
Kpn2I TCCGGA 1 cut(s) 1178
Kzo9I GATC 6 cut(s) 270, 328, 1465, 1756, 1902, 1951
LguI GCTCTTC 1 cut(s) 141
LmnI GCTCC 1 cut(s) 175
Lsp1109I GCAGC 4 cut(s) 1220, 1621, 2075, 2078
LweI GCATC 3 cut(s) 245, 773, 1297
MabI ACCWGGT 1 cut(s) 878
MaeI CTAG 5 cut(s) 554, 1595, 1727, 2015, 2239
MaeII ACGT 3 cut(s) 45, 76, 582
MaeIII GTNAC 5 cut(s) 32, 1088, 1402, 1552, 1619
MalI GATC 6 cut(s) 272, 330, 1467, 1758, 1904, 1953
MboI GATC 6 cut(s) 270, 328, 1465, 1756, 1902, 1951
MflI RGATCY 3 cut(s) 270, 328, 1951
MhlI GDGCHC 3 cut(s) 312, 2072, 2082
MlsI TGGCCA 1 cut(s) 1033
MluNI TGGCCA 1 cut(s) 1033
Mly113I GGCGCC 1 cut(s) 1016
MlyI GAGTC 4 cut(s) 1084, 1869, 2195, 2214
MmeI TCCRAC 2 cut(s) 396, 1173
Mox20I TGGCCA 1 cut(s) 1033
MroI TCCGGA 1 cut(s) 1178
MscI TGGCCA 1 cut(s) 1033
MseI TTAA 9 cut(s) 254, 437, 504, 740, 807, 1085, 1169, 1232, 1386
MslI CAYNNNNRTG 2 cut(s) 79, 988
Msp20I TGGCCA 1 cut(s) 1033
MspI CCGG 2 cut(s) 6, 1179
MspR9I CCNGG 3 cut(s) 880, 1223, 1503
MvaI CCWGG 3 cut(s) 880, 1223, 1503
MvnI CGCG 2 cut(s) 694, 2198
MwoI GCNNNNNNNGC 2 cut(s) 628, 1610
NarI GGCGCC 1 cut(s) 1016
NdeI CATATG 2 cut(s) 1761, 2084
NdeII GATC 6 cut(s) 270, 328, 1465, 1756, 1902, 1951
NlaIII CATG 9 cut(s) 386, 610, 782, 844, 993, 1041, 1142, 1493, 1744
NlaIV GGNNCC 5 cut(s) 309, 877, 1017, 1043, 2080
NmuCI GTSAC 3 cut(s) 32, 1088, 1402
NspI RCATGY 2 cut(s) 844, 1744
OliI CACNNNNGTG 1 cut(s) 79
PaeI GCATGC 1 cut(s) 1744
PciI ACATGT 1 cut(s) 840
PciSI GCTCTTC 1 cut(s) 141
PcsI WCGNNNNNNNCGW 1 cut(s) 206
PfeI GAWTC 7 cut(s) 140, 467, 823, 980, 1216, 1751, 1874
Pfl23II CGTACG 1 cut(s) 1356
PflMI CCANNNNNTGG 2 cut(s) 274, 304
PfoI TCCNGGA 1 cut(s) 1501
PkrI GCNGC 4 cut(s) 1210, 1636, 2090, 2093
PleI GAGTC 4 cut(s) 1083, 1868, 2194, 2214
PluTI GGCGCC 1 cut(s) 1019
PpsI GAGTC 4 cut(s) 1083, 1868, 2194, 2214
Ppu21I YACGTR 2 cut(s) 77, 583
PscI ACATGT 1 cut(s) 840
PshBI ATTAAT 1 cut(s) 807
PsiI TTATAA 1 cut(s) 648
Psp6I CCWGG 3 cut(s) 878, 1221, 1501
PspEI GGTNACC 1 cut(s) 1402
PspFI CCCAGC 2 cut(s) 462, 1768
PspGI CCWGG 3 cut(s) 878, 1221, 1501
PspLI CGTACG 1 cut(s) 1356
PspN4I GGNNCC 5 cut(s) 309, 877, 1017, 1043, 2080
PspOMI GGGCCC 1 cut(s) 2078
PspPI GGNCC 4 cut(s) 265, 1478, 2078, 2079
PsrI GAACNNNNNNTAC 2 cut(s) 702, 734
PstI CTGCAG 2 cut(s) 703, 1210
PsuI RGATCY 3 cut(s) 270, 328, 1951
RsaI GTAC 5 cut(s) 720, 893, 1358, 1672, 2113
RsaNI GTAC 5 cut(s) 719, 892, 1357, 1671, 2112
RseI CAYNNNNRTG 2 cut(s) 79, 988
SapI GCTCTTC 1 cut(s) 141
SaqAI TTAA 9 cut(s) 254, 437, 504, 740, 807, 1085, 1169, 1232, 1386
SatI GCNGC 4 cut(s) 1209, 1635, 2089, 2092
Sau3AI GATC 6 cut(s) 270, 328, 1465, 1756, 1902, 1951
Sau96I GGNCC 4 cut(s) 265, 1478, 2078, 2079
ScaI AGTACT 1 cut(s) 893
SchI GAGTC 4 cut(s) 1084, 1869, 2195, 2214
ScrFI CCNGG 3 cut(s) 880, 1223, 1503
SduI GDGCHC 3 cut(s) 312, 2072, 2082
SexAI ACCWGGT 1 cut(s) 878
SfaNI GCATC 3 cut(s) 245, 773, 1297
SfcI CTRYAG 3 cut(s) 699, 847, 1206
SfoI GGCGCC 1 cut(s) 1017
SinI GGWCC 2 cut(s) 265, 1478
SmiMI CAYNNNNRTG 2 cut(s) 79, 988
SmlI CTYRAG 2 cut(s) 350, 753
SmoI CTYRAG 2 cut(s) 350, 753
SnaBI TACGTA 1 cut(s) 583
SphI GCATGC 1 cut(s) 1744
SsiI CCGC 3 cut(s) 1627, 1914, 2198
SspDI GGCGCC 1 cut(s) 1015
SspI AATATT 1 cut(s) 641
SspMI CTAG 5 cut(s) 554, 1595, 1727, 2015, 2239
StyD4I CCNGG 3 cut(s) 878, 1221, 1501
TaaI ACNGT 2 cut(s) 1336, 1558
TaiI ACGT 3 cut(s) 48, 79, 585
TaqI TCGA 6 cut(s) 200, 209, 402, 1289, 1305, 1719
TatI WGTACW 3 cut(s) 718, 891, 2111
TfiI GAWTC 7 cut(s) 140, 467, 823, 980, 1216, 1751, 1874
Tru1I TTAA 9 cut(s) 254, 437, 504, 740, 807, 1085, 1169, 1232, 1386
Tru9I TTAA 9 cut(s) 254, 437, 504, 740, 807, 1085, 1169, 1232, 1386
TscAI CASTG 1 cut(s) 129
TseFI GTSAC 3 cut(s) 32, 1088, 1402
TseI GCWGC 4 cut(s) 1208, 1634, 2088, 2091
Tsp45I GTSAC 3 cut(s) 32, 1088, 1402
TspGWI ACGGA 1 cut(s) 1344
TspRI CASTG 1 cut(s) 129
Van91I CCANNNNNTGG 2 cut(s) 274, 304
VpaK11BI GGWCC 2 cut(s) 265, 1478
VspI ATTAAT 1 cut(s) 807
XapI RAATTY 4 cut(s) 506, 686, 901, 1780
XbaI TCTAGA 2 cut(s) 553, 1726
XceI RCATGY 2 cut(s) 844, 1744
XmiI GTMKAC 2 cut(s) 579, 1294
XspI CTAG 5 cut(s) 554, 1595, 1727, 2015, 2239
ZrmI AGTACT 1 cut(s) 893
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.