TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| C-JID | PF20160 | 164 - 310 | 5.4e-20 | C-JID domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 205 |
| AccB1I | GGYRCC | 1 cut(s) | 7 |
| AccI | GTMKAC | 1 cut(s) | 286 |
| AccIII | TCCGGA | 1 cut(s) | 170 |
| AciI | CCGC | 2 cut(s) | 619, 906 |
| AclWI | GGATC | 1 cut(s) | 902 |
| AcoI | YGGCCR | 1 cut(s) | 23 |
| AcsI | RAATTY | 1 cut(s) | 772 |
| AcyI | GRCGYC | 1 cut(s) | 8 |
| AfaI | GTAC | 2 cut(s) | 350, 664 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 828 |
| AgsI | TTSAA | 5 cut(s) | 333, 388, 520, 743, 870 |
| AjnI | CCWGG | 2 cut(s) | 213, 493 |
| AluBI | AGCT | 1 cut(s) | 274 |
| AluI | AGCT | 1 cut(s) | 274 |
| Alw21I | GWGCWC | 2 cut(s) | 1064, 1106 |
| Alw26I | GTCTC | 4 cut(s) | 247, 317, 1158, 1201 |
| Alw44I | GTGCAC | 1 cut(s) | 1102 |
| AlwI | GGATC | 1 cut(s) | 902 |
| Aor13HI | TCCGGA | 1 cut(s) | 170 |
| AoxI | GGCC | 3 cut(s) | 23, 819, 1070 |
| ApaI | GGGCCC | 1 cut(s) | 1074 |
| ApaLI | GTGCAC | 1 cut(s) | 1102 |
| ApeKI | GCWGC | 4 cut(s) | 200, 626, 1080, 1083 |
| ApoI | RAATTY | 1 cut(s) | 772 |
| AspLEI | GCGC | 2 cut(s) | 10, 605 |
| AspS9I | GGNCC | 4 cut(s) | 470, 943, 1070, 1071 |
| AsuHPI | GGTGA | 1 cut(s) | 406 |
| AvaII | GGWCC | 2 cut(s) | 470, 943 |
| BaeGI | GKGCMC | 2 cut(s) | 1074, 1106 |
| BalI | TGGCCA | 1 cut(s) | 25 |
| BanI | GGYRCC | 1 cut(s) | 7 |
| BanII | GRGCYC | 1 cut(s) | 1074 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 523, 555 |
| BauI | CACGAG | 1 cut(s) | 19 |
| BbsI | GAAGAC | 1 cut(s) | 531 |
| Bbv12I | GWGCWC | 2 cut(s) | 1064, 1106 |
| BbvCI | CCTCAGC | 1 cut(s) | 354 |
| BbvI | GCAGC | 4 cut(s) | 212, 613, 1067, 1070 |
| BccI | CCATC | 6 cut(s) | 125, 531, 614, 674, 716, 1021 |
| BceAI | ACGGC | 2 cut(s) | 21, 245 |
| BciT130I | CCWGG | 2 cut(s) | 215, 495 |
| BcoDI | GTCTC | 4 cut(s) | 247, 317, 1158, 1201 |
| BfaI | CTAG | 3 cut(s) | 587, 719, 1231 |
| BfmI | CTRYAG | 1 cut(s) | 198 |
| BfoI | RGCGCY | 1 cut(s) | 11 |
| BfuAI | ACCTGC | 1 cut(s) | 205 |
| BisI | GCNGC | 4 cut(s) | 201, 627, 1081, 1084 |
| BlsI | GCNGC | 4 cut(s) | 202, 628, 1082, 1085 |
| Bme1390I | CCNGG | 2 cut(s) | 215, 495 |
| Bme18I | GGWCC | 2 cut(s) | 470, 943 |
| BmgT120I | GGNCC | 4 cut(s) | 470, 943, 1070, 1071 |
| BmiI | GGNNCC | 3 cut(s) | 9, 35, 1072 |
| BmrFI | CCNGG | 2 cut(s) | 215, 495 |
| BmsI | GCATC | 1 cut(s) | 289 |
| BpiI | GAAGAC | 1 cut(s) | 531 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1046, 1078 |
| BpmI | CTGGAG | 2 cut(s) | 83, 1182 |
| Bpu10I | CCTNAGC | 2 cut(s) | 354, 1063 |
| Bsa29I | ATCGAT | 1 cut(s) | 297 |
| BsaHI | GRCGYC | 1 cut(s) | 8 |
| BsaJI | CCNNGG | 3 cut(s) | 214, 816, 936 |
| BsaWI | WCCGGW | 1 cut(s) | 170 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1140, 1170 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 828 |
| Bse1I | ACTGG | 1 cut(s) | 733 |
| Bse3DI | GCAATG | 3 cut(s) | 111, 135, 210 |
| BseAI | TCCGGA | 1 cut(s) | 170 |
| BseBI | CCWGG | 2 cut(s) | 215, 495 |
| BseCI | ATCGAT | 1 cut(s) | 297 |
| BseDI | CCNNGG | 3 cut(s) | 214, 816, 936 |
| BseGI | GGATG | 2 cut(s) | 855, 1159 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 828 |
| BseMI | GCAATG | 3 cut(s) | 111, 135, 210 |
| BseMII | CTCAG | 4 cut(s) | 230, 345, 1077, 1212 |
| BseNI | ACTGG | 1 cut(s) | 733 |
| BseRI | GAGGAG | 2 cut(s) | 1070, 1205 |
| BseSI | GKGCMC | 2 cut(s) | 1074, 1106 |
| BseXI | GCAGC | 4 cut(s) | 212, 613, 1067, 1070 |
| BseYI | CCCAGC | 1 cut(s) | 760 |
| BsgI | GTGCAG | 1 cut(s) | 1061 |
| BshFI | GGCC | 3 cut(s) | 25, 821, 1072 |
| BshNI | GGYRCC | 1 cut(s) | 7 |
| BshVI | ATCGAT | 1 cut(s) | 297 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1064, 1106 |
| BsiSI | CCGG | 1 cut(s) | 171 |
| BsiWI | CGTACG | 1 cut(s) | 348 |
| BslFI | GGGAC | 1 cut(s) | 1224 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 828 |
| BsmAI | GTCTC | 4 cut(s) | 247, 317, 1158, 1201 |
| BsmFI | GGGAC | 1 cut(s) | 1224 |
| BsnI | GGCC | 3 cut(s) | 25, 821, 1072 |
| Bsp120I | GGGCCC | 1 cut(s) | 1070 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1064, 1074, 1106 |
| Bsp13I | TCCGGA | 1 cut(s) | 170 |
| Bsp143I | GATC | 2 cut(s) | 748, 894 |
| BspACI | CCGC | 2 cut(s) | 619, 906 |
| BspANI | GGCC | 3 cut(s) | 25, 821, 1072 |
| BspCNI | CTCAG | 4 cut(s) | 231, 346, 1076, 1211 |
| BspDI | ATCGAT | 1 cut(s) | 297 |
| BspEI | TCCGGA | 1 cut(s) | 170 |
| BspLI | GGNNCC | 3 cut(s) | 9, 35, 1072 |
| BspMAI | CTGCAG | 1 cut(s) | 202 |
| BspMI | ACCTGC | 1 cut(s) | 205 |
| BspPI | GGATC | 1 cut(s) | 902 |
| BspT107I | GGYRCC | 1 cut(s) | 7 |
| BsrDI | GCAATG | 3 cut(s) | 111, 135, 210 |
| BsrI | ACTGG | 1 cut(s) | 733 |
| BssECI | CCNNGG | 3 cut(s) | 214, 816, 936 |
| BssMI | GATC | 2 cut(s) | 748, 894 |
| BssNAI | GTATAC | 1 cut(s) | 287 |
| BssNI | GRCGYC | 1 cut(s) | 8 |
| BssSI | CACGAG | 1 cut(s) | 19 |
| Bst1107I | GTATAC | 1 cut(s) | 287 |
| Bst2BI | CACGAG | 1 cut(s) | 19 |
| Bst2UI | CCWGG | 2 cut(s) | 215, 495 |
| Bst4CI | ACNGT | 4 cut(s) | 328, 482, 530, 550 |
| Bst6I | CTCTTC | 2 cut(s) | 495, 1041 |
| BstACI | GRCGYC | 1 cut(s) | 8 |
| BstC8I | GCNNGC | 4 cut(s) | 573, 577, 734, 841 |
| BstDEI | CTNAG | 5 cut(s) | 239, 354, 667, 1063, 1198 |
| BstEII | GGTNACC | 1 cut(s) | 394 |
| BstF5I | GGATG | 2 cut(s) | 855, 1159 |
| BstH2I | RGCGCY | 1 cut(s) | 11 |
| BstHHI | GCGC | 2 cut(s) | 10, 605 |
| BstKTI | GATC | 2 cut(s) | 751, 897 |
| BstMAI | GTCTC | 4 cut(s) | 247, 317, 1158, 1201 |
| BstMBI | GATC | 2 cut(s) | 748, 894 |
| BstNI | CCWGG | 2 cut(s) | 215, 495 |
| BstNSI | RCATGY | 1 cut(s) | 736 |
| BstPI | GGTNACC | 1 cut(s) | 394 |
| BstSCI | CCNGG | 2 cut(s) | 213, 493 |
| BstSFI | CTRYAG | 1 cut(s) | 198 |
| BstSLI | GKGCMC | 2 cut(s) | 1074, 1106 |
| BstV1I | GCAGC | 4 cut(s) | 212, 613, 1067, 1070 |
| BstV2I | GAAGAC | 1 cut(s) | 531 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 567 |
| BstZ17I | GTATAC | 1 cut(s) | 287 |
| Bsu15I | ATCGAT | 1 cut(s) | 297 |
| BsuRI | GGCC | 3 cut(s) | 25, 821, 1072 |
| BsuTUI | ATCGAT | 1 cut(s) | 297 |
| BtsCI | GGATG | 2 cut(s) | 855, 1159 |
| BveI | ACCTGC | 1 cut(s) | 205 |
| Cac8I | GCNNGC | 4 cut(s) | 573, 577, 734, 841 |
| CfoI | GCGC | 2 cut(s) | 10, 605 |
| Cfr13I | GGNCC | 4 cut(s) | 470, 943, 1070, 1071 |
| ClaI | ATCGAT | 1 cut(s) | 297 |
| Csp6I | GTAC | 2 cut(s) | 349, 663 |
| CviAII | CATG | 2 cut(s) | 30, 733 |
| CviJI | RGCY | 7 cut(s) | 25, 232, 274, 343, 571, 821, 1072 |
| CviKI_1 | RGCY | 7 cut(s) | 25, 232, 274, 343, 571, 821, 1072 |
| CviQI | GTAC | 2 cut(s) | 349, 663 |
| DdeI | CTNAG | 5 cut(s) | 239, 354, 667, 1063, 1198 |
| DinI | GGCGCC | 1 cut(s) | 9 |
| DpnI | GATC | 2 cut(s) | 750, 896 |
| DpnII | GATC | 2 cut(s) | 748, 894 |
| EaeI | YGGCCR | 1 cut(s) | 23 |
| Eam1104I | CTCTTC | 2 cut(s) | 495, 1041 |
| EarI | CTCTTC | 2 cut(s) | 495, 1041 |
| Eco24I | GRGCYC | 1 cut(s) | 1074 |
| Eco47I | GGWCC | 2 cut(s) | 470, 943 |
| Eco91I | GGTNACC | 1 cut(s) | 394 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1070 |
| EcoO65I | GGTNACC | 1 cut(s) | 394 |
| EcoRII | CCWGG | 2 cut(s) | 213, 493 |
| EcoT38I | GRGCYC | 1 cut(s) | 1074 |
| EgeI | GGCGCC | 1 cut(s) | 9 |
| EheI | GGCGCC | 1 cut(s) | 9 |
| FaeI | CATG | 2 cut(s) | 33, 736 |
| FaqI | GGGAC | 1 cut(s) | 1224 |
| FatI | CATG | 2 cut(s) | 29, 732 |
| FauI | CCCGC | 2 cut(s) | 612, 899 |
| FauNDI | CATATG | 3 cut(s) | 106, 753, 1076 |
| FblI | GTMKAC | 1 cut(s) | 286 |
| Fnu4HI | GCNGC | 4 cut(s) | 201, 627, 1081, 1084 |
| FokI | GGATG | 2 cut(s) | 842, 1166 |
| FriOI | GRGCYC | 1 cut(s) | 1074 |
| Fsp4HI | GCNGC | 4 cut(s) | 201, 627, 1081, 1084 |
| FspBI | CTAG | 3 cut(s) | 587, 719, 1231 |
| GlaI | GCGC | 2 cut(s) | 9, 604 |
| GluI | GCNGC | 4 cut(s) | 201, 627, 1081, 1084 |
| GsaI | CCCAGC | 1 cut(s) | 764 |
| GsuI | CTGGAG | 2 cut(s) | 83, 1182 |
| HaeII | RGCGCY | 1 cut(s) | 11 |
| HaeIII | GGCC | 3 cut(s) | 25, 821, 1072 |
| HapII | CCGG | 1 cut(s) | 171 |
| HhaI | GCGC | 2 cut(s) | 10, 605 |
| Hin1I | GRCGYC | 1 cut(s) | 8 |
| Hin1II | CATG | 2 cut(s) | 33, 736 |
| Hin6I | GCGC | 2 cut(s) | 8, 603 |
| HinP1I | GCGC | 2 cut(s) | 8, 603 |
| HinfI | GANTC | 7 cut(s) | 67, 208, 743, 852, 866, 1178, 1212 |
| HpaII | CCGG | 1 cut(s) | 171 |
| HphI | GGTGA | 1 cut(s) | 406 |
| Hpy166II | GTNNAC | 5 cut(s) | 194, 287, 594, 943, 1104 |
| Hpy188I | TCNGA | 7 cut(s) | 48, 130, 240, 371, 748, 779, 1183 |
| Hpy188III | TCNNGA | 7 cut(s) | 62, 71, 171, 509, 686, 719, 1065 |
| Hpy8I | GTNNAC | 5 cut(s) | 194, 287, 594, 943, 1104 |
| HpyAV | CCTTC | 1 cut(s) | 1199 |
| HpyCH4III | ACNGT | 4 cut(s) | 328, 482, 530, 550 |
| HpyCH4V | TGCA | 9 cut(s) | 87, 200, 249, 312, 553, 629, 888, 1042, 1104 |
| HpyF3I | CTNAG | 5 cut(s) | 239, 354, 667, 1063, 1198 |
| Hsp92I | GRCGYC | 1 cut(s) | 8 |
| Hsp92II | CATG | 2 cut(s) | 33, 736 |
| HspAI | GCGC | 2 cut(s) | 8, 603 |
| KasI | GGCGCC | 1 cut(s) | 7 |
| Kpn2I | TCCGGA | 1 cut(s) | 170 |
| Kzo9I | GATC | 2 cut(s) | 748, 894 |
| Lsp1109I | GCAGC | 4 cut(s) | 212, 613, 1067, 1070 |
| LweI | GCATC | 1 cut(s) | 289 |
| MaeI | CTAG | 3 cut(s) | 587, 719, 1231 |
| MaeIII | GTNAC | 4 cut(s) | 80, 394, 544, 611 |
| MalI | GATC | 2 cut(s) | 750, 896 |
| MboI | GATC | 2 cut(s) | 748, 894 |
| MboII | GAAGA | 5 cut(s) | 482, 531, 893, 1036, 1058 |
| MfeI | CAATTG | 1 cut(s) | 565 |
| MhlI | GDGCHC | 3 cut(s) | 1064, 1074, 1106 |
| MlsI | TGGCCA | 1 cut(s) | 25 |
| MluCI | AATT | 8 cut(s) | 98, 158, 379, 554, 565, 691, 772, 955 |
| MluNI | TGGCCA | 1 cut(s) | 25 |
| Mly113I | GGCGCC | 1 cut(s) | 8 |
| MlyI | GAGTC | 4 cut(s) | 76, 861, 1187, 1206 |
| MmeI | TCCRAC | 1 cut(s) | 165 |
| Mox20I | TGGCCA | 1 cut(s) | 25 |
| MroI | TCCGGA | 1 cut(s) | 170 |
| MscI | TGGCCA | 1 cut(s) | 25 |
| MseI | TTAA | 4 cut(s) | 77, 161, 224, 378 |
| Msp20I | TGGCCA | 1 cut(s) | 25 |
| MspI | CCGG | 1 cut(s) | 171 |
| MspR9I | CCNGG | 2 cut(s) | 215, 495 |
| MunI | CAATTG | 1 cut(s) | 565 |
| MvaI | CCWGG | 2 cut(s) | 215, 495 |
| NarI | GGCGCC | 1 cut(s) | 8 |
| NdeI | CATATG | 3 cut(s) | 106, 753, 1076 |
| NdeII | GATC | 2 cut(s) | 748, 894 |
| NlaIII | CATG | 2 cut(s) | 33, 736 |
| NlaIV | GGNNCC | 3 cut(s) | 9, 35, 1072 |
| NmuCI | GTSAC | 2 cut(s) | 80, 394 |
| NspI | RCATGY | 1 cut(s) | 736 |
| PaeI | GCATGC | 1 cut(s) | 736 |
| PfeI | GAWTC | 3 cut(s) | 208, 743, 866 |
| Pfl23II | CGTACG | 1 cut(s) | 348 |
| PfoI | TCCNGGA | 1 cut(s) | 493 |
| PkrI | GCNGC | 4 cut(s) | 202, 628, 1082, 1085 |
| PleI | GAGTC | 4 cut(s) | 75, 860, 1186, 1206 |
| PluTI | GGCGCC | 1 cut(s) | 11 |
| PpsI | GAGTC | 4 cut(s) | 75, 860, 1186, 1206 |
| Psp6I | CCWGG | 2 cut(s) | 213, 493 |
| PspEI | GGTNACC | 1 cut(s) | 394 |
| PspFI | CCCAGC | 1 cut(s) | 760 |
| PspGI | CCWGG | 2 cut(s) | 213, 493 |
| PspLI | CGTACG | 1 cut(s) | 348 |
| PspN4I | GGNNCC | 3 cut(s) | 9, 35, 1072 |
| PspOMI | GGGCCC | 1 cut(s) | 1070 |
| PspPI | GGNCC | 4 cut(s) | 470, 943, 1070, 1071 |
| PstI | CTGCAG | 1 cut(s) | 202 |
| RsaI | GTAC | 2 cut(s) | 350, 664 |
| RsaNI | GTAC | 2 cut(s) | 349, 663 |
| SaqAI | TTAA | 4 cut(s) | 77, 161, 224, 378 |
| SatI | GCNGC | 4 cut(s) | 201, 627, 1081, 1084 |
| Sau3AI | GATC | 2 cut(s) | 748, 894 |
| Sau96I | GGNCC | 4 cut(s) | 470, 943, 1070, 1071 |
| SchI | GAGTC | 4 cut(s) | 76, 861, 1187, 1206 |
| ScrFI | CCNGG | 2 cut(s) | 215, 495 |
| SduI | GDGCHC | 3 cut(s) | 1064, 1074, 1106 |
| SetI | ASST | 9 cut(s) | 199, 247, 276, 450, 475, 668, 848, 948, 1041 |
| SfaNI | GCATC | 1 cut(s) | 289 |
| SfcI | CTRYAG | 1 cut(s) | 198 |
| SfoI | GGCGCC | 1 cut(s) | 9 |
| SinI | GGWCC | 2 cut(s) | 470, 943 |
| SphI | GCATGC | 1 cut(s) | 736 |
| Sse9I | AATT | 8 cut(s) | 98, 158, 379, 554, 565, 691, 772, 955 |
| SsiI | CCGC | 2 cut(s) | 619, 906 |
| SspDI | GGCGCC | 1 cut(s) | 7 |
| SspMI | CTAG | 3 cut(s) | 587, 719, 1231 |
| StyD4I | CCNGG | 2 cut(s) | 213, 493 |
| TaaI | ACNGT | 4 cut(s) | 328, 482, 530, 550 |
| TaqI | TCGA | 3 cut(s) | 281, 297, 711 |
| TasI | AATT | 8 cut(s) | 98, 158, 379, 554, 565, 691, 772, 955 |
| TfiI | GAWTC | 3 cut(s) | 208, 743, 866 |
| Tru1I | TTAA | 4 cut(s) | 77, 161, 224, 378 |
| Tru9I | TTAA | 4 cut(s) | 77, 161, 224, 378 |
| TseFI | GTSAC | 2 cut(s) | 80, 394 |
| TseI | GCWGC | 4 cut(s) | 200, 626, 1080, 1083 |
| Tsp45I | GTSAC | 2 cut(s) | 80, 394 |
| TspDTI | ATGAA | 3 cut(s) | 171, 267, 816 |
| TspGWI | ACGGA | 2 cut(s) | 336, 532 |
| VneI | GTGCAC | 1 cut(s) | 1102 |
| VpaK11BI | GGWCC | 2 cut(s) | 470, 943 |
| XapI | RAATTY | 1 cut(s) | 772 |
| XbaI | TCTAGA | 1 cut(s) | 718 |
| XceI | RCATGY | 1 cut(s) | 736 |
| XmiI | GTMKAC | 1 cut(s) | 286 |
| XspI | CTAG | 3 cut(s) | 587, 719, 1231 |