Rorug01G0201700

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000067
Physical Location & Seq
Forward (+)
28097191 .. 28103214
6024 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0201700.1

Sequence Viewer

Length: 1272 bp
ATGGGCAAAGACGACGAGGAGATGCGGGGCGAGATTGAGGAGAGGCTAGTCAACGAGGAGTACAAGATATGGAAGAAGAACACTCCCTTTCTCTACGATCTGGTCATAACTCACGCCCTGGAGTGGCCGTCGCTCACCGTCGAGTGGCTGCCGGACCGGGAGGAGCCGCCGGGGAAGGACTACTCGGTGCAGAAGATGATATTGGGGACGCACACCTCGGAAAATGAGCCCAATTATCTTATGCTCGCGCAGGTCCAGCTGCCGTTGGAGGACGCGGAGAACGATGCTCGTAATTATGATGATGATCGTGCCGAGGCTGGAGGTTTCGGCTGCGCTAATGGCAAGGTGCAAATAATCCAGCAAATAAACCATGATGGAGAGGTTAATCGGGCTCGTTATATGCCTCAGAATCCATTTATTATTGCCACAAAAACTGTCAGTGCTGAAGTTTTTGTGTTTGATTATAGCAAACACCCATCTAAGCCTCCTTTAGATGGTGCATGCAGTCCTGATTTGAGGCTCAGGGGTCATAGCACTGAAGGATATGGTTTATCATGGAGTAAGTTCAAGCAGGGTCATTTACTCAGTGGTTCTGATGATGCGCAAATATGTTTGTGGGATATCAATGCAAATTCTAAGAACAAAACCCTGGAGGCTACTCAGATATTTAAGGTCCACGAAGGTGTTGTAGAAGATGTAGCATGGCATTTGAGGCATGAATATTTATTCGGTTCTGTTGGTGATGATCAATACCTTCTGATATGGGATCTCCGGACTCCATCAGTTACCAAGCCTGTCCAATCTGTAGTTGCTCATCAAAGTGAGGTCAACTGTTTGGCTTTCAATCCCTTTAATGAATGGGTGGTTGCAACTGGGTCCACTGACAAAACTGTCAAGCTGTTTGATCTACGCAAAATCAGTACCGCTCTCCACACCTTTGATTGCCATAAGGAGGAGGTTTTCCAAGTCGGTTGGAATCCGAAGAATGAGACTATCTTAGCTTCTTGTTGTCTTGGCAGGAGACTGATGGTGTGGGATCTTAGCAGAATTGATGAGGAGCAAACACCAGAAGATGCGGAAGATGGACCCCCAGAGTTGCTTTTTATTCATGGTGGTCACACCAGTAAAATATCTGATTTTTCTTGGAATCCATGTGAAGATTGGGTTATATCTAGTGTTGCTGAAGATAACATACTGCAGATCTGGCAGATGGCGGAGAATATATACCATGATGAAGATGATTTACCTGAAGAACCGGCAAAGCAGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR

Protein Analysis

423

Amino Acids

48.21

Weight (kDa)

4.69

Isoelectric Point (pI)

48.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAF1C_H4-bd PF12265 19 - 88 1.7e-31 Histone-binding protein RBBP4 or subunit C of CAF1 complex
Beta-prop_THOC3 PF25174 115 - 219 3.5e-06 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 123 - 288 1.8e-12 WDR3 first beta-propeller domain
Beta-prop_CAF1B_HIR1 PF24105 173 - 263 1e-08 CAF1B/HIR1 beta-propeller domain
WD40_CDC20-Fz PF24807 175 - 402 1.5e-21 CDC20/Fizzy WD40 domain
Beta-prop_THOC3 PF25174 178 - 267 8.3e-12 THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 178 - 331 6.7e-08 WDR36/Utp21 second beta-propeller domain
WD40_Gbeta PF25391 181 - 306 2.2e-09 G protein beta WD-40 repeat protein
Beta-prop_EML_2 PF23414 191 - 361 4.5e-12 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_2nd PF25172 194 - 302 5e-06 WDR3 second beta-propeller domain
WDR55 PF24796 214 - 351 3.2e-10 WDR55
Beta-prop_WDR5 PF25175 216 - 350 4.9e-20 WDR5 beta-propeller domain
Beta-prop_EIPR1 PF23609 227 - 301 4.5e-11 EIPR1 beta-propeller
Beta-prop_WDR36-Utp21_1st PF25171 247 - 403 4.1e-08 WDR36/Utp21 first beta-propeller
Beta-prop_EML PF23409 252 - 348 3.9e-06 Echinoderm microtubule-associated protein first beta-propeller
WD40 PF00400 264 - 302 6.7e-09 WD domain, G-beta repeat
Beta-prop_TEP1_2nd PF25047 266 - 403 2.3e-06 TEP-1 second beta-propeller
Beta-prop_WDR3_1st PF25173 266 - 406 1.2e-12 WDR3 first beta-propeller domain
Beta-prop_Aladin PF25460 268 - 406 7.7e-07 Aladin seven-bladed propeller
WD40_WDHD1_1st PF24817 269 - 352 7.1e-08 WDHD1 first WD40 domain
WD40_Prp19 PF24814 272 - 405 5.8e-12 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 272 - 352 4.3e-13 THOC3 beta-propeller domain
Beta-prop_THOC3 PF25174 316 - 406 3e-07 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000067)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g01690 FvH4_6g01690 FvH4_7g11151 FvH4_7g11160 FvH4_7g11570 FvH4_7g17700 FvH4_7g26071 FvH4_7g28510 FvH4_7g28520 FvH4_7g28530 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550
malus_domestica MD00G1020300.v1.1 MD00G1020400.v1.1 MD00G1020500.v1.1 MD00G1020700.v1.1 MD00G1021100.v1.1 MD00G1131100.v1.1 MD01G1188900.v1.1 MD01G1189000.v1.1 MD01G1189200.v1.1 MD01G1190100.v1.1 MD01G1190300.v1.1 MD01G1190500.v1.1 MD01G1190700.v1.1 MD01G1191400.v1.1 MD02G1260000.v1.1 MD02G1260200.v1.1 MD02G1260400.v1.1 MD03G1202400.v1.1 MD04G1022500.v1.1 MD04G1022700.v1.1 MD04G1200400.v1.1 MD07G1015300.v1.1 MD07G1015400.v1.1 MD07G1141800.v1.1 MD07G1242100.v1.1 MD07G1242500.v1.1 MD07G1243000.v1.1 MD07G1243500.v1.1 MD07G1244000.v1.1 MD07G1244600.v1.1 MD07G1245100.v1.1 MD07G1245600.v1.1 MD07G1246000.v1.1 MD07G1246200.v1.1 MD07G1260000.v1.1 MD07G1260700.v1.1 MD07G1261100.v1.1 MD08G1229600.v1.1 MD08G1229700.v1.1 MD08G1230200.v1.1 MD09G1186700.v1.1 MD09G1186800.v1.1 MD17G1208600.v1.1
pyrus_communis pycom01g20080 pycom01g20090 pycom01g20120 pycom01g20130 pycom01g20160 pycom01g20200 pycom01g20210 pycom01g20250 pycom02g22140 pycom02g22170 pycom02g22200 pycom02g22220 pycom02g22230 pycom03g15410 pycom03g15420 pycom04g01960 pycom04g01970 pycom07g21840 pycom07g21930 pycom07g21960 pycom07g22000 pycom07g23350 pycom07g23370 pycom07g23440 pycom07g23450 pycom07g23460 pycom07g23500 pycom07g23530 pycom07g23590 pycom07g23660 pycom07g23670 pycom07g23690 pycom07g23710 pycom07g23760 pycom07g23770 pycom07g23780 pycom07g23800 pycom07g23820 pycom08g19980 pycom08g19990 pycom08g20010 pycom08g20020 pycom17g04750 pycom17g21140 pycom17g21200 pycom17g21250 pycom17g21270 pycom17g21290 pycom17g21340 pycom17g21350
rosa_chinensis RchiOBHm_Chr1g0335971 RchiOBHm_Chr1g0349181 RchiOBHm_Chr1g0349211 RchiOBHm_Chr1g0349221 RchiOBHm_Chr1g0350001 RchiOBHm_Chr1g0372491 RchiOBHm_Chr1g0372501 RchiOBHm_Chr1g0372511 RchiOBHm_Chr1g0372541 RchiOBHm_Chr1g0375911 RchiOBHm_Chr1g0375921 RchiOBHm_Chr1g0375931 RchiOBHm_Chr1g0375941 RchiOBHm_Chr1g0375951 RchiOBHm_Chr3g0454321 RchiOBHm_Chr6g0266131 RchiOBHm_Chr6g0270371 RchiOBHm_Chr6g0270381 RchiOBHm_Chr6g0270391 RchiOBHm_Chr7g0232121 RchiOBHm_Chr7g0232831
rosa_laevigata RLG00000008620 RLG00000009600 RLG00000010114 RLG00000020933 RLG00000022777 RLG00000022778 RLG00000025461 RLG00000025462 RLG00000026641 RLG00000026642 RLG00000026643 RLG00000026894 RLG00000028442 RLG00000028506 RLG00000028510 RLG00000028563 RLG00000028564 RLG00000028570 RLG00000028574 RLG00000028577 RLG00000028579 RLG00000028580 RLG00000028582 RLG00000028584 RLG00000028588 RLG00000028591 RLG00000028592 RLG00000028596
rosa_multiflora Rmu_co8179714.1_g000001 Rmu_co8285207.1_g000001 Rmu_co8469031.1_g000001 Rmu_co8499245.1_g000002 Rmu_sc0000616.1_g000011 Rmu_sc0000827.1_g000022 Rmu_sc0000827.1_g000025 Rmu_sc0000827.1_g000034 Rmu_sc0000827.1_g000036 Rmu_sc0001340.1_g000001 Rmu_sc0001909.1_g000018 Rmu_sc0002863.1_g000018 Rmu_sc0002863.1_g000031 Rmu_sc0002914.1_g000028 Rmu_sc0002914.1_g000029 Rmu_sc0002914.1_g000032 Rmu_sc0003385.1_g000001 Rmu_sc0003385.1_g000008 Rmu_sc0003385.1_g000009 Rmu_sc0003385.1_g000013 Rmu_sc0003385.1_g000015 Rmu_sc0003385.1_g000025 Rmu_sc0003441.1_g000069 Rmu_sc0003674.1_g000007 Rmu_sc0003674.1_g000011 Rmu_sc0004618.1_g000001 Rmu_sc0005410.1_g000018 Rmu_sc0006415.1_g000005 Rmu_sc0006415.1_g000006 Rmu_sc0006415.1_g000014 Rmu_sc0006415.1_g000018 Rmu_sc0009606.1_g000011 Rmu_sc0011111.1_g000006 Rmu_sc0011709.1_g000003 Rmu_sc0011709.1_g000006 Rmu_sc0014584.1_g000002 Rmu_sc0015952.1_g000001 Rmu_sc0019347.1_g000001 Rmu_sc0019347.1_g000002 Rmu_sc0019347.1_g000003 Rmu_sc0023808.1_g000001 Rmu_sc0032581.1_g000001 Rmu_sc0034725.1_g000002 Rmu_sc0035038.1_g000001 Rmu_ssc0000018.1_g000005 Rmu_ssc0000018.1_g000006 Rmu_ssc0000116.1_g000002 Rmu_ssc0000150.1_g000009 Rmu_ssc0000150.1_g000011 Rmu_ssc0000472.1_g000013
rosa_roxburghii Rroxscaffold_165G00437140 Rroxscaffold_174G00435220 Rroxscaffold_3G00228770 Rroxscaffold_3G00228780 Rroxscaffold_4G00282480 Rroxscaffold_4G00282490 Rroxscaffold_4G00282510 Rroxscaffold_4G00282520 Rroxscaffold_4G00282540 Rroxscaffold_4G00284870 Rroxscaffold_4G00295380 Rroxscaffold_4G00305140 Rroxscaffold_4G00305150 Rroxscaffold_4G00305210 Rroxscaffold_4G00305760 Rroxscaffold_4G00305810 Rroxscaffold_4G00305840 Rroxscaffold_4G00305900 Rroxscaffold_4G00305920 Rroxscaffold_4G00305960 Rroxscaffold_4G00305980 Rroxscaffold_4G00305990 Rroxscaffold_4G00306020 Rroxscaffold_4G00325020 Rroxscaffold_5G00352760 Rroxscaffold_6G00425210 Rroxscaffold_7G00201950 Rroxscaffold_7G00214940
rosa_rugosa Rorug01G0048900 Rorug01G0049000 Rorug01G0201400 Rorug01G0201700 Rorug01G0202000 Rorug01G0207700 Rorug01G0207800 Rorug01G0207900 Rorug01G0286300 Rorug01G0286400 Rorug01G0286500 Rorug01G0372500 Rorug01G0372600 Rorug01G0392300 Rorug01G0392400 Rorug01G0392500 Rorug01G0392600 Rorug01G0392700 Rorug01G0392800 Rorug01G0392800 Rorug01G0392900 Rorug01G0393000 Rorug02G0654200 Rorug02G0654200 Rorug04G0027700 Rorug05G0351300 Rorug05G0351400 Rorug05G0351600 Rorug05G0406600 Rorug07G0269500 Rorug07G0276200 Rorug07G0276200
rosa_samantha Rh1AG224200 Rh1AG229900 Rh1AG297600 Rh1AG297700 Rh1AG381000 Rh1AG404200 Rh1AG404300 Rh1AG404400 Rh1BG184300 Rh1BG367600 Rh1BG367900 Rh1BG368000 Rh1CG203700 Rh1CG208900 Rh1CG279000 Rh1CG279100 Rh1CG357900 Rh1CG380500 Rh1CG380700 Rh1CG380800 Rh1CG380900 Rh1DG214000 Rh3AG058200 Rh3BG059900 Rh6BG145500 Rh6BG292400 Rh6DG129800 Rh7AG423900 Rh7AG431300 Rh7BG249300 Rh7BG404200 Rh7CG049400 Rh7CG444300 Rh7CG450000 Rh7DG420600
rosa_wichuraiana Rw0G000410 Rw0G007570 Rw0G011870 Rw1G018580 Rw1G018590 Rw1G018610 Rw1G018620 Rw1G018640 Rw1G019140 Rw1G019150 Rw1G019260 Rw1G019900 Rw1G026290 Rw1G026300 Rw1G026870 Rw1G026890 Rw1G033510 Rw1G035810 Rw1G035830 Rw1G035840 Rw1G035850 Rw1G035860 Rw3G004460 Rw5G038750 Rw7G035060 Rw7G035610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 890
Acc16I TGCGCA 1 cut(s) 603
Acc36I ACCTGC 1 cut(s) 241
AccBSI CCGCTC 1 cut(s) 926
AccII CGCG 2 cut(s) 248, 275
AccIII TCCGGA 1 cut(s) 771
AciI CCGC 6 cut(s) 25, 167, 275, 924, 1076, 1214
AclWI GGATC 2 cut(s) 774, 1044
AcoI YGGCCR 1 cut(s) 125
AcsI RAATTY 1 cut(s) 631
AcuI CTGAAG 4 cut(s) 465, 558, 1203, 1269
AfaI GTAC 2 cut(s) 62, 922
AfiI CCNNNNNNNGG 4 cut(s) 123, 144, 494, 952
AgsI TTSAA 2 cut(s) 568, 844
AjnI CCWGG 2 cut(s) 117, 648
AjuI GAANNNNNNNTTGG 2 cut(s) 185, 217
AleI CACNNNNGTG 1 cut(s) 681
AluBI AGCT 3 cut(s) 259, 898, 1001
AluI AGCT 3 cut(s) 259, 898, 1001
Alw26I GTCTC 2 cut(s) 983, 1015
AlwI GGATC 2 cut(s) 774, 1044
Aor13HI TCCGGA 1 cut(s) 771
AoxI GGCC 1 cut(s) 125
ApeKI GCWGC 4 cut(s) 148, 259, 330, 1264
ApoI RAATTY 1 cut(s) 631
AspLEI GCGC 3 cut(s) 250, 335, 604
AspS9I GGNCC 5 cut(s) 154, 253, 673, 876, 1085
AsuC2I CCSGG 2 cut(s) 158, 171
AsuHPI GGTGA 2 cut(s) 127, 752
AvaII GGWCC 5 cut(s) 154, 253, 673, 876, 1085
BanII GRGCYC 2 cut(s) 231, 394
BarI GAAGNNNNNNTAC 4 cut(s) 1176, 1208, 1227, 1259
BbvI GCAGC 3 cut(s) 135, 246, 317
BccI CCATC 7 cut(s) 368, 484, 488, 787, 1021, 1076, 1204
BceAI ACGGC 2 cut(s) 112, 247
BciT130I CCWGG 2 cut(s) 119, 650
BclI TGATCA 1 cut(s) 745
BcnI CCSGG 2 cut(s) 158, 171
BcoDI GTCTC 2 cut(s) 983, 1015
BfaI CTAG 2 cut(s) 47, 1173
BfmI CTRYAG 2 cut(s) 804, 1196
BfuAI ACCTGC 1 cut(s) 241
BglII AGATCT 1 cut(s) 1200
BisI GCNGC 5 cut(s) 149, 167, 260, 331, 1265
BlsI GCNGC 5 cut(s) 150, 168, 261, 332, 1266
Bme1390I CCNGG 4 cut(s) 119, 158, 171, 650
Bme18I GGWCC 5 cut(s) 154, 253, 673, 876, 1085
BmgT120I GGNCC 5 cut(s) 154, 253, 673, 876, 1085
BmiI GGNNCC 3 cut(s) 165, 877, 1087
BmrFI CCNGG 4 cut(s) 119, 158, 171, 650
BmrI ACTGGG 1 cut(s) 882
BmsI GCATC 4 cut(s) 12, 274, 589, 1063
BmuI ACTGGG 1 cut(s) 882
BpmI CTGGAG 3 cut(s) 140, 339, 671
Bpu10I CCTNAGC 1 cut(s) 521
BpuMI CCSGG 2 cut(s) 158, 171
BsaBI GATNNNNATC 1 cut(s) 303
BsaJI CCNNGG 5 cut(s) 117, 170, 216, 312, 648
BsaWI WCCGGW 1 cut(s) 771
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bsc4I CCNNNNNNNGG 4 cut(s) 123, 144, 494, 952
Bse118I RCCGGY 1 cut(s) 1255
Bse1I ACTGG 2 cut(s) 877, 1122
Bse8I GATNNNNATC 1 cut(s) 303
BseAI TCCGGA 1 cut(s) 771
BseBI CCWGG 2 cut(s) 119, 650
BseDI CCNNGG 5 cut(s) 117, 170, 216, 312, 648
BseJI GATNNNNATC 1 cut(s) 303
BseLI CCNNNNNNNGG 4 cut(s) 123, 144, 494, 952
BseMII CTCAG 4 cut(s) 419, 535, 598, 674
BseNI ACTGG 2 cut(s) 877, 1122
BseRI GAGGAG 6 cut(s) 32, 53, 71, 176, 968, 1070
BseXI GCAGC 3 cut(s) 135, 246, 317
BsgI GTGCAG 1 cut(s) 209
Bsh1236I CGCG 2 cut(s) 248, 275
BshFI GGCC 1 cut(s) 127
BsiSI CCGG 5 cut(s) 152, 157, 170, 772, 1256
BslFI GGGAC 1 cut(s) 220
BslI CCNNNNNNNGG 4 cut(s) 123, 144, 494, 952
BsmAI GTCTC 2 cut(s) 983, 1015
BsmFI GGGAC 1 cut(s) 220
BsnI GGCC 1 cut(s) 127
Bsp1286I GDGCHC 2 cut(s) 231, 394
Bsp13I TCCGGA 1 cut(s) 771
Bsp143I GATC 7 cut(s) 97, 304, 745, 766, 904, 1036, 1200
BspACI CCGC 6 cut(s) 25, 167, 275, 924, 1076, 1214
BspANI GGCC 1 cut(s) 127
BspCNI CTCAG 4 cut(s) 418, 534, 597, 673
BspEI TCCGGA 1 cut(s) 771
BspFNI CGCG 2 cut(s) 248, 275
BspLI GGNNCC 3 cut(s) 165, 877, 1087
BspMAI CTGCAG 1 cut(s) 1200
BspMI ACCTGC 1 cut(s) 241
BspPI GGATC 2 cut(s) 774, 1044
BsrBI CCGCTC 1 cut(s) 926
BsrFI RCCGGY 1 cut(s) 1255
BsrI ACTGG 2 cut(s) 877, 1122
BssAI RCCGGY 1 cut(s) 1255
BssECI CCNNGG 5 cut(s) 117, 170, 216, 312, 648
BssMI GATC 7 cut(s) 97, 304, 745, 766, 904, 1036, 1200
Bst2UI CCWGG 2 cut(s) 119, 650
Bst4CI ACNGT 4 cut(s) 139, 436, 833, 892
BstC8I GCNNGC 2 cut(s) 246, 502
BstDEI CTNAG 9 cut(s) 405, 480, 521, 584, 636, 660, 997, 1040, 1269
BstFNI CGCG 2 cut(s) 248, 275
BstHHI GCGC 3 cut(s) 250, 335, 604
BstKTI GATC 7 cut(s) 100, 307, 748, 769, 907, 1039, 1203
BstMAI GTCTC 2 cut(s) 983, 1015
BstMBI GATC 7 cut(s) 97, 304, 745, 766, 904, 1036, 1200
BstMWI GCNNNNNNNGC 4 cut(s) 256, 339, 712, 1204
BstNI CCWGG 2 cut(s) 119, 650
BstNSI RCATGY 1 cut(s) 504
BstSCI CCNGG 4 cut(s) 117, 156, 169, 648
BstSFI CTRYAG 2 cut(s) 804, 1196
BstUI CGCG 2 cut(s) 248, 275
BstV1I GCAGC 3 cut(s) 135, 246, 317
BstX2I RGATCY 3 cut(s) 766, 1036, 1200
BstYI RGATCY 3 cut(s) 766, 1036, 1200
BsuRI GGCC 1 cut(s) 127
BtsIMutI CAGTG 4 cut(s) 445, 534, 592, 879
BveI ACCTGC 1 cut(s) 241
Cac8I GCNNGC 2 cut(s) 246, 502
CfoI GCGC 3 cut(s) 250, 335, 604
Cfr10I RCCGGY 1 cut(s) 1255
Cfr13I GGNCC 5 cut(s) 154, 253, 673, 876, 1085
CpoI CGGWCCG 1 cut(s) 154
CseI GACGC 2 cut(s) 217, 281
Csp6I GTAC 2 cut(s) 61, 921
CspI CGGWCCG 1 cut(s) 154
CviAII CATG 8 cut(s) 371, 501, 555, 702, 716, 1109, 1152, 1229
CviQI GTAC 2 cut(s) 61, 921
DdeI CTNAG 9 cut(s) 405, 480, 521, 584, 636, 660, 997, 1040, 1269
DpnI GATC 7 cut(s) 99, 306, 747, 768, 906, 1038, 1202
DpnII GATC 7 cut(s) 97, 304, 745, 766, 904, 1036, 1200
DrdI GACNNNNNNGTC 1 cut(s) 890
DseDI GACNNNNNNGTC 1 cut(s) 890
EaeI YGGCCR 1 cut(s) 125
EciI GGCGGA 1 cut(s) 1229
Eco24I GRGCYC 2 cut(s) 231, 394
Eco32I GATATC 1 cut(s) 622
Eco47I GGWCC 5 cut(s) 154, 253, 673, 876, 1085
Eco57I CTGAAG 4 cut(s) 465, 558, 1203, 1269
EcoRII CCWGG 2 cut(s) 117, 648
EcoRV GATATC 1 cut(s) 622
EcoT38I GRGCYC 2 cut(s) 231, 394
FaeI CATG 8 cut(s) 374, 504, 558, 705, 719, 1112, 1155, 1232
FaqI GGGAC 1 cut(s) 220
FatI CATG 8 cut(s) 370, 500, 554, 701, 715, 1108, 1151, 1228
FauI CCCGC 1 cut(s) 18
FbaI TGATCA 1 cut(s) 745
Fnu4HI GCNGC 5 cut(s) 149, 167, 260, 331, 1265
FriOI GRGCYC 2 cut(s) 231, 394
Fsp4HI GCNGC 5 cut(s) 149, 167, 260, 331, 1265
FspBI CTAG 2 cut(s) 47, 1173
FspI TGCGCA 1 cut(s) 603
GlaI GCGC 3 cut(s) 249, 334, 603
GluI GCNGC 5 cut(s) 149, 167, 260, 331, 1265
GsuI CTGGAG 3 cut(s) 140, 339, 671
HaeIII GGCC 1 cut(s) 127
HapII CCGG 5 cut(s) 152, 157, 170, 772, 1256
HgaI GACGC 2 cut(s) 217, 281
HhaI GCGC 3 cut(s) 250, 335, 604
Hin1II CATG 8 cut(s) 374, 504, 558, 705, 719, 1112, 1155, 1232
Hin6I GCGC 3 cut(s) 248, 333, 602
HinP1I GCGC 3 cut(s) 248, 333, 602
HincII GTYRAC 2 cut(s) 52, 829
HindII GTYRAC 2 cut(s) 52, 829
HinfI GANTC 4 cut(s) 409, 775, 976, 1147
HpaII CCGG 5 cut(s) 152, 157, 170, 772, 1256
HphI GGTGA 2 cut(s) 127, 752
Hpy166II GTNNAC 4 cut(s) 52, 676, 829, 879
Hpy188I TCNGA 7 cut(s) 220, 408, 595, 663, 759, 981, 1135
Hpy188III TCNNGA 2 cut(s) 509, 772
Hpy8I GTNNAC 4 cut(s) 52, 676, 829, 879
Hpy99I CGWCG 3 cut(s) 17, 133, 143
HpyAV CCTTC 4 cut(s) 169, 533, 674, 764
HpyCH4III ACNGT 4 cut(s) 139, 436, 833, 892
HpyCH4V TGCA 7 cut(s) 190, 349, 500, 504, 629, 869, 1198
HpyF10VI GCNNNNNNNGC 4 cut(s) 256, 339, 712, 1204
HpyF3I CTNAG 9 cut(s) 405, 480, 521, 584, 636, 660, 997, 1040, 1269
Hsp92II CATG 8 cut(s) 374, 504, 558, 705, 719, 1112, 1155, 1232
HspAI GCGC 3 cut(s) 248, 333, 602
Kpn2I TCCGGA 1 cut(s) 771
Ksp22I TGATCA 1 cut(s) 745
Kzo9I GATC 7 cut(s) 97, 304, 745, 766, 904, 1036, 1200
LmnI GCTCC 2 cut(s) 163, 1057
Lsp1109I GCAGC 3 cut(s) 135, 246, 317
LweI GCATC 4 cut(s) 12, 274, 589, 1063
MaeI CTAG 2 cut(s) 47, 1173
MaeIII GTNAC 2 cut(s) 784, 1115
MalI GATC 7 cut(s) 99, 306, 747, 768, 906, 1038, 1202
MbiI CCGCTC 1 cut(s) 926
MboI GATC 7 cut(s) 97, 304, 745, 766, 904, 1036, 1200
MflI RGATCY 3 cut(s) 766, 1036, 1200
MhlI GDGCHC 2 cut(s) 231, 394
MluCI AATT 4 cut(s) 232, 292, 631, 1047
MlyI GAGTC 1 cut(s) 769
MmeI TCCRAC 2 cut(s) 246, 953
MroI TCCGGA 1 cut(s) 771
MseI TTAA 3 cut(s) 384, 669, 852
MslI CAYNNNNRTG 2 cut(s) 681, 819
MspA1I CMGCKG 1 cut(s) 259
MspI CCGG 5 cut(s) 152, 157, 170, 772, 1256
MspR9I CCNGG 4 cut(s) 119, 158, 171, 650
MvaI CCWGG 2 cut(s) 119, 650
MvnI CGCG 2 cut(s) 248, 275
MwoI GCNNNNNNNGC 4 cut(s) 256, 339, 712, 1204
NciI CCSGG 2 cut(s) 158, 171
NdeII GATC 7 cut(s) 97, 304, 745, 766, 904, 1036, 1200
NlaIII CATG 8 cut(s) 374, 504, 558, 705, 719, 1112, 1155, 1232
NlaIV GGNNCC 3 cut(s) 165, 877, 1087
NmeAIII GCCGAG 1 cut(s) 337
NmuCI GTSAC 1 cut(s) 1115
NsbI TGCGCA 1 cut(s) 603
NspI RCATGY 1 cut(s) 504
OliI CACNNNNGTG 1 cut(s) 681
PaeI GCATGC 1 cut(s) 504
PcsI WCGNNNNNNNCGW 1 cut(s) 279
PfeI GAWTC 3 cut(s) 409, 976, 1147
PkrI GCNGC 5 cut(s) 150, 168, 261, 332, 1266
PleI GAGTC 1 cut(s) 769
PpsI GAGTC 1 cut(s) 769
Psp6I CCWGG 2 cut(s) 117, 648
PspGI CCWGG 2 cut(s) 117, 648
PspN4I GGNNCC 3 cut(s) 165, 877, 1087
PspPI GGNCC 5 cut(s) 154, 253, 673, 876, 1085
PstI CTGCAG 1 cut(s) 1200
PsuI RGATCY 3 cut(s) 766, 1036, 1200
PvuII CAGCTG 1 cut(s) 259
RsaI GTAC 2 cut(s) 62, 922
RsaNI GTAC 2 cut(s) 61, 921
RseI CAYNNNNRTG 2 cut(s) 681, 819
Rsr2I CGGWCCG 1 cut(s) 154
RsrII CGGWCCG 1 cut(s) 154
SaqAI TTAA 3 cut(s) 384, 669, 852
SatI GCNGC 5 cut(s) 149, 167, 260, 331, 1265
Sau3AI GATC 7 cut(s) 97, 304, 745, 766, 904, 1036, 1200
Sau96I GGNCC 5 cut(s) 154, 253, 673, 876, 1085
SchI GAGTC 1 cut(s) 769
ScrFI CCNGG 4 cut(s) 119, 158, 171, 650
SduI GDGCHC 2 cut(s) 231, 394
SfaNI GCATC 4 cut(s) 12, 274, 589, 1063
SfcI CTRYAG 2 cut(s) 804, 1196
SinI GGWCC 5 cut(s) 154, 253, 673, 876, 1085
SmiMI CAYNNNNRTG 2 cut(s) 681, 819
SphI GCATGC 1 cut(s) 504
Sse9I AATT 4 cut(s) 232, 292, 631, 1047
SsiI CCGC 6 cut(s) 25, 167, 275, 924, 1076, 1214
SspI AATATT 1 cut(s) 722
SspMI CTAG 2 cut(s) 47, 1173
StyD4I CCNGG 4 cut(s) 117, 156, 169, 648
TaaI ACNGT 4 cut(s) 139, 436, 833, 892
TaqI TCGA 1 cut(s) 141
TasI AATT 4 cut(s) 232, 292, 631, 1047
TatI WGTACW 1 cut(s) 60
TauI GCSGC 1 cut(s) 169
TfiI GAWTC 3 cut(s) 409, 976, 1147
Tru1I TTAA 3 cut(s) 384, 669, 852
Tru9I TTAA 3 cut(s) 384, 669, 852
TscAI CASTG 4 cut(s) 445, 541, 592, 886
TseFI GTSAC 1 cut(s) 1115
TseI GCWGC 4 cut(s) 148, 259, 330, 1264
Tsp45I GTSAC 1 cut(s) 1115
TspDTI ATGAA 4 cut(s) 732, 870, 1097, 1248
TspRI CASTG 4 cut(s) 445, 541, 592, 886
VpaK11BI GGWCC 5 cut(s) 154, 253, 673, 876, 1085
XapI RAATTY 1 cut(s) 631
XceI RCATGY 1 cut(s) 504
XcmI CCANNNNNNNNNTGG 1 cut(s) 1158
XspI CTAG 2 cut(s) 47, 1173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.